Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_19681_v3 Cicer arietinum L. HOM05D006780 ORTHO05D008455 7.6e-130 467.2 246 100.0
Psat7g145160 Pisum sativum HOM05D006780 ORTHO05D008455 2.2e-113 412.5 249 81.9
TPR.G31925 Trifolium pratense HOM05D006780 ORTHO05D008455 8.2e-108 394.0 249 85.1
Medtr4g033475 Medicago truncatula HOM05D006780 ORTHO05D008455 6.5e-105 384.4 244 78.7
Lj3g0022672 Lotus japonicus HOM05D006780 ORTHO05D008455 3.1e-91 339.0 202 79.7
VMungo1127G1066 Vigna mungo HOM05D006780 ORTHO05D008455 3.0e-86 322.4 201 76.1
Phvul.011G002600 Phaseolus vulgaris HOM05D006780 ORTHO05D008455 1.7e-81 306.6 207 72.9
Manes.09G119100 Manihot esculenta HOM05D006780 ORTHO05D008455 2.2e-81 306.2 229 65.9
Sabra04G0017100 Salix brachista HOM05D006780 ORTHO05D008455 5.0e-81 305.1 205 69.3
COL.COLO4_34143 Corchorus olitorius HOM05D006780 ORTHO05D008455 2.5e-80 302.8 239 62.3
Potri.004G030100 Populus trichocarpa HOM05D006780 ORTHO05D008455 2.5e-80 302.8 207 68.6
arahy.Tifrunner.gnm1.ann1.T2A0GP Arachis hypogaea HOM05D006780 ORTHO05D008455 9.4e-80 300.8 244 63.1
Glyma.12G002200 Glycine max HOM05D006780 ORTHO05D008455 9.4e-80 300.8 200 72.5
arahy.Tifrunner.gnm1.ann1.T66758 Arachis hypogaea HOM05D006780 ORTHO05D008455 4.7e-79 298.5 244 62.7
Gohir.A05G389500 Gossypium hirsutum HOM05D006780 ORTHO05D008455 4.7e-79 298.5 194 71.6
Cfa013613 Carpinus fangiana HOM05D006780 ORTHO05D008455 8.0e-79 297.7 195 71.8
Glyma.09G234600 Glycine max HOM05D006780 ORTHO05D008455 1.4e-78 297.0 200 71.5
Thecc.05G208000 Theobroma cacao HOM05D006780 ORTHO05D008455 1.4e-78 297.0 195 70.8
Gorai.012G029700 Gossypium raimondii HOM05D006780 ORTHO05D008455 3.0e-78 295.8 194 71.1
QL09p026712 Quercus lobata HOM05D006780 ORTHO05D008455 1.2e-77 293.9 237 61.6
Gorai.004G260300 Gossypium raimondii HOM05D006780 ORTHO05D008455 1.5e-77 293.5 194 70.6
Atru.chr12.2100 Acer truncatum HOM05D006780 ORTHO05D008455 2.0e-77 293.1 194 70.1
ClCG01G004850 Citrullus lanatus HOM05D006780 ORTHO05D008455 2.0e-77 293.1 195 69.2
Gohir.D04G027000 Gossypium hirsutum HOM05D006780 ORTHO05D008455 2.0e-77 293.1 194 70.1
Eucgr.K00108 Eucalyptus grandis HOM05D006780 ORTHO05D008455 3.4e-77 292.4 200 68.5
Nitab4.5_0007683g0020 Nicotiana tabacum HOM05D006780 ORTHO05D008455 3.4e-77 292.4 195 71.8
Sed0025589 Sechium edule HOM05D006780 ORTHO05D008455 3.4e-77 292.4 195 69.2
Gohir.1Z049572 Gossypium hirsutum HOM05D006780 ORTHO05D008455 7.5e-77 291.2 194 70.1
Nitab4.5_0000011g0110 Nicotiana tabacum HOM05D006780 ORTHO05D008455 7.5e-77 291.2 195 71.8
MELO3C005448.2 Cucumis melo HOM05D006780 ORTHO05D008455 2.2e-76 289.7 195 67.7
CiPaw.08G043400 Carya illinoinensis HOM05D006780 ORTHO05D008455 4.8e-76 288.5 196 69.4
ECA233G5194 Erigeron canadensis HOM05D006780 ORTHO05D008455 8.3e-76 287.7 195 70.8
Gohir.A08G223700 Gossypium hirsutum HOM05D006780 ORTHO05D008455 1.1e-75 287.3 194 69.6
CiPaw.07G182200 Carya illinoinensis HOM05D006780 ORTHO05D008455 1.4e-75 287.0 194 69.6
Hma1.2p1_0115F.1_g055870 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 1.8e-75 286.6 196 69.9
Prupe.2G322900 Prunus persica HOM05D006780 ORTHO05D008455 1.8e-75 286.6 202 66.3
Nn6g33682 Nelumbo nucifera HOM05D006780 ORTHO05D008455 1.2e-74 283.9 195 68.2
CANSAT21G1469 Cannabis sativa HOM05D006780 ORTHO05D008455 2.0e-74 283.1 225 64.4
HanXRQChr08g0225871 Helianthus annuus HOM05D006780 ORTHO05D008455 2.7e-74 282.7 196 69.4
CSS0033689 Camellia sinensis var. sinensis HOM05D006780 ORTHO05D008455 3.5e-74 282.3 198 68.2
CsaV3_5G005070 Cucumis sativus L. HOM05D006780 ORTHO05D008455 4.5e-74 282.0 195 66.2
Lj3A891T47 Lonicera japonica HOM05D006780 ORTHO05D008455 5.9e-74 281.6 198 68.2
MD01G1232400 Malus domestica HOM05D006780 ORTHO05D008455 5.9e-74 281.6 205 64.9
TWI60G0503 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 5.9e-74 281.6 196 69.4
Solyc07g005550.4 Solanum lycopersicum HOM05D006780 ORTHO05D008455 1.7e-73 280.0 195 68.7
Sopen07g001650 Solanum pennellii HOM05D006780 ORTHO05D008455 1.7e-73 280.0 195 68.7
RcHm_v2.0_Chr1g0383391 Rosa chinensis HOM05D006780 ORTHO05D008455 2.9e-73 279.3 197 68.5
PGR142G1227 Punica granatum HOM05D006780 ORTHO05D008455 3.8e-73 278.9 197 65.5
TWI34G0276 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 5.0e-73 278.5 212 65.1
Lsat_1_v5_gn_8_3841 Lactuca sativa HOM05D006780 ORTHO05D008455 8.5e-73 277.7 198 68.7
SalBow2G3389 Salvia bowleyana HOM05D006780 ORTHO05D008455 1.1e-72 277.3 198 67.7
Cc02_g00520 Coffea canephora HOM05D006780 ORTHO05D008455 2.5e-72 276.2 196 66.8
MSTRG.17 Avicennia marina HOM05D006780 ORTHO05D008455 3.2e-72 275.8 196 66.3
Migut.F00963 Erythranthe guttata HOM05D006780 ORTHO05D008455 9.4e-72 274.2 198 67.2
Actinidia34294 Actinidia chinensis HOM05D006780 ORTHO05D008455 1.2e-71 273.9 197 66.5
Actinidia08727 Actinidia chinensis HOM05D006780 ORTHO05D008455 2.1e-71 273.1 205 64.4
Dinv29183 Davidia involucrata HOM05D006780 ORTHO05D008455 2.1e-71 273.1 198 66.2
Ciclev10012613m.g Citrus clementina HOM05D006780 ORTHO05D008455 6.1e-71 271.6 212 61.3
Hund14300 Selenicereus undatus HOM05D006780 ORTHO05D008455 8.0e-71 271.2 195 63.6
TAR636G2448 Trochodendron aralioides HOM05D006780 ORTHO05D008455 8.0e-71 271.2 195 66.7
CAN.G160.70 Capsicum annuum HOM05D006780 ORTHO05D008455 1.8e-70 270.0 196 66.3
MD07G1304300 Malus domestica HOM05D006780 ORTHO05D008455 1.8e-70 270.0 204 64.2
THA.LOC104805709 Tarenaya hassleriana HOM05D006780 ORTHO05D008455 1.5e-69 266.9 201 64.2
TAR629G2389 Trochodendron aralioides HOM05D006780 ORTHO05D008455 1.5e-69 266.9 197 64.0
GSVIVG01024468001 Vitis vinifera HOM05D006780 ORTHO05D008455 1.5e-69 266.9 195 65.6
FvH4_7g33420 Fragaria vesca HOM05D006780 ORTHO05D008455 2.0e-69 266.5 197 66.0
FAN01G1241 Fragaria x ananassa HOM05D006780 ORTHO05D008455 2.6e-69 266.2 197 66.0
FAN10G0287 Fragaria x ananassa HOM05D006780 ORTHO05D008455 2.6e-69 266.2 197 66.0
FAN10G2247 Fragaria x ananassa HOM05D006780 ORTHO05D008455 2.6e-69 266.2 197 66.0
FAN03G1919 Fragaria x ananassa HOM05D006780 ORTHO05D008455 7.5e-69 264.6 197 65.5
vmacro06481 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 1.7e-68 263.5 220 60.9
SGA_v2.0_scaffold165G38216 Striga asiatica HOM05D006780 ORTHO05D008455 3.7e-68 262.3 199 64.8
vmacro10178 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 4.1e-67 258.8 237 55.3
Aa31LG2G2290 Aethionema arabicum HOM05D006780 ORTHO05D008455 5.4e-67 258.5 202 62.4
Ah.12g058490 Amaranthus hybridus HOM05D006780 ORTHO05D008455 1.2e-66 257.3 198 60.6
Peaxi162Scf00542g00012 Petunia axillaris HOM05D006780 ORTHO05D008455 1.2e-66 257.3 202 64.4
Sc07g0007970 Simmondsia chinensis HOM05D006780 ORTHO05D008455 2.7e-66 256.1 175 67.4
Thhalv10022468m.g Eutrema salsugineum HOM05D006780 ORTHO05D008455 5.9e-66 255.0 206 61.7
unitig_52.g16857 Utricularia gibba HOM05D006780 ORTHO05D008455 5.9e-66 255.0 195 62.6
AUR62010478 Chenopodium quinoa HOM05D006780 ORTHO05D008455 7.7e-66 254.6 195 61.5
Rhsim09G0211500 Rhododendron simsii HOM05D006780 ORTHO05D008455 1.0e-65 254.2 250 52.8
AT2G44870 Arabidopsis thaliana HOM05D006780 ORTHO05D008455 1.3e-65 253.8 206 61.2
AUR62030415 Chenopodium quinoa HOM05D006780 ORTHO05D008455 1.7e-65 253.4 195 61.0
Hma1.2p1_0115F.1_g055860 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 2.3e-65 253.1 196 65.3
BcaC03g14678 Brassica carinata HOM05D006780 ORTHO05D008455 2.9e-65 252.7 205 61.0
A02p13050 Brassica napus HOM05D006780 ORTHO05D008455 2.9e-65 252.7 205 61.0
BolC2t08258H Brassica oleracea HOM05D006780 ORTHO05D008455 2.9e-65 252.7 205 61.0
BraA02t06361Z Brassica rapa HOM05D006780 ORTHO05D008455 8.6e-65 251.1 205 60.5
AL2G19830 Arabidopsis lyrata HOM05D006780 ORTHO05D008455 1.6e-63 246.9 202 60.4
Rhsim03G0219000 Rhododendron simsii HOM05D006780 ORTHO05D008455 1.6e-63 246.9 228 55.7
C02p21190 Brassica napus HOM05D006780 ORTHO05D008455 2.1e-63 246.5 205 60.5
Aqoxy3G02533 Aquilegia oxysepala HOM05D006780 ORTHO05D008455 3.6e-63 245.7 248 50.8
Dinv17273 Davidia involucrata HOM05D006780 ORTHO05D008455 1.0e-62 244.2 159 71.7
Sp5g19750 Schrenkiella parvula HOM05D006780 ORTHO05D008455 4.0e-62 242.3 205 59.0
PGSC0003DMG400011181 Solanum tuberosum HOM05D006780 ORTHO05D008455 6.8e-62 241.5 271 48.7
BcaB05g24083 Brassica carinata HOM05D006780 ORTHO05D008455 1.2e-61 240.7 206 58.7
DCAR_008997 Daucus carota HOM05D006780 ORTHO05D008455 5.7e-61 238.4 212 56.1
CDE02G2736 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 9.8e-61 237.7 194 57.2
Carub.0002s1056 Capsella rubella HOM05D006780 ORTHO05D008455 2.2e-60 236.5 203 58.1
PSO063G3320 Papaver somniferum HOM05D006780 ORTHO05D008455 1.7e-57 226.9 198 56.6
PSO782G3414 Papaver somniferum HOM05D006780 ORTHO05D008455 3.0e-57 226.1 198 57.1
CDE11G0765 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 3.9e-57 225.7 194 55.2
EL10Ac5g12581 Beta vulgaris HOM05D006780 ORTHO05D008455 1.5e-56 223.8 256 46.1
CDE02G3388 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 2.5e-56 223.0 194 53.1
Zm00001eb024190 Zea mays HOM05D006780 ORTHO05D008455 4.7e-55 218.8 223 48.0
CARHR056600 Cardamine hirsuta HOM05D006780 ORTHO05D008455 1.8e-54 216.9 206 54.4
ATR0829G223 Amborella trichopoda HOM05D006780 ORTHO05D008455 8.9e-54 214.5 194 51.5
Duzib128G1164 Durio zibethinus HOM05D006780 ORTHO05D008455 1.4e-51 207.2 227 48.5
Duzib177G1050 Durio zibethinus HOM05D006780 ORTHO05D008455 8.6e-49 198.0 195 50.8
CDE11G0053 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 1.2e-45 187.6 194 46.4
Pp3c8_4270 Physcomitrium patens HOM05D006780 ORTHO05D008455 1.8e-38 163.7 200 39.0
HPP92_025668 Vanilla planifolia HOM05D006780 ORTHO05D008455 2.3e-38 163.3 195 45.1
SMO301G0031 Selaginella moellendorffii HOM05D006780 ORTHO05D008455 4.9e-36 155.6 191 39.3
Mapoly0133s0055 Marchantia polymorpha HOM05D006780 ORTHO05D008455 7.3e-32 141.7 153 43.1
Cpa.g.sc39.45 Carica papaya HOM05D006780 ORTHO05D008455 4.2e-27 125.9 94 59.6
CBR_g642 Chara braunii HOM05D006780 ORTHO05D008455 1.8e-22 110.5 204 32.4
CSS0031860 Camellia sinensis var. sinensis HOM05D001955 ORTHO05D001917 3.8e-12 76.3 66 57.6
Os10g0569000 Oryza sativa ssp. japonica HOM05D006780 ORTHO05D008455 2.4e-11 73.6 78 43.6


User provided reference genes

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