Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 0.0e+00 1854.3 914 100.0
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 0.0e+00 1586.6 918 85.9
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 0.0e+00 1578.1 937 84.7
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 0.0e+00 1489.2 923 80.2
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 0.0e+00 1486.1 916 80.7
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1468.4 926 78.7
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 0.0e+00 1455.3 926 78.5
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 0.0e+00 1414.1 893 79.2
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1400.2 925 75.6
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1357.8 1014 68.7
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 0.0e+00 1269.2 931 69.4
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 0.0e+00 1263.8 930 69.7
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1255.4 920 70.2
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 0.0e+00 1255.0 921 69.5
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 0.0e+00 1252.7 927 68.7
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 0.0e+00 1250.3 929 69.6
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1249.6 945 68.4
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 0.0e+00 1240.3 944 67.4
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 0.0e+00 1238.8 986 65.9
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1238.8 938 67.7
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1237.6 938 67.5
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1229.9 943 67.4
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1224.9 922 68.7
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1223.8 921 68.9
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1223.4 927 67.9
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1203.7 924 68.3
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1203.3 943 67.1
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1203.3 924 66.7
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1197.2 912 68.3
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1196.4 944 66.3
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1195.6 928 66.7
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1194.5 928 66.5
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1191.0 943 66.0
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1188.3 940 65.7
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 0.0e+00 1187.9 942 65.3
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 0.0e+00 1185.6 959 65.2
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1180.2 930 66.1
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1175.2 942 66.0
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 0.0e+00 1171.8 921 65.4
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 0.0e+00 1171.0 930 65.7
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1161.4 964 63.6
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1159.1 917 65.0
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 0.0e+00 1157.1 927 64.1
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1155.2 934 64.1
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 0.0e+00 1155.2 912 64.7
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 0.0e+00 1151.7 914 63.0
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 0.0e+00 1151.3 914 64.2
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 0.0e+00 1147.9 914 63.3
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 0.0e+00 1146.7 916 63.4
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1140.6 985 61.0
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 0.0e+00 1140.6 922 64.6
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1137.9 985 60.7
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1136.3 985 60.7
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1127.5 882 65.2
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 0.0e+00 1127.5 998 60.7
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 0.0e+00 1122.8 941 61.8
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 0.0e+00 1122.5 931 62.4
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1121.3 853 68.7
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1120.9 938 62.6
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1120.5 932 63.7
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1119.8 951 61.5
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1115.9 936 62.3
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 0.0e+00 1113.2 1028 60.0
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 0.0e+00 1112.8 934 61.7
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1112.1 932 61.8
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 0.0e+00 1111.3 938 62.0
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1110.9 931 64.1
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 0.0e+00 1110.1 926 62.1
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1109.7 957 60.6
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1109.4 943 61.4
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 0.0e+00 1109.4 929 61.7
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1106.7 947 60.9
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1105.1 980 59.4
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1104.0 933 63.9
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1104.0 928 62.4
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 0.0e+00 1104.0 928 62.4
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1102.0 954 59.6
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1100.9 933 61.3
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 0.0e+00 1100.9 933 61.3
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 0.0e+00 1098.2 961 60.4
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 0.0e+00 1095.1 923 62.0
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1094.7 918 61.3
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 0.0e+00 1089.7 944 60.0
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 0.0e+00 1087.4 909 61.7
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 0.0e+00 1086.2 946 61.5
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1085.9 967 59.6
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1083.6 929 60.4
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 0.0e+00 1080.5 839 66.5
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1078.2 816 68.4
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 0.0e+00 1078.2 893 61.9
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 0.0e+00 1076.6 933 60.5
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 6.3e-312 1073.9 917 63.4
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 8.1e-310 1067.0 889 63.3
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 5.2e-309 1064.3 1096 54.7
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 6.8e-309 1063.9 928 60.5
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 2.9e-307 1058.5 1043 55.0
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 4.9e-307 1057.7 933 61.5
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 2.4e-306 1055.4 888 62.8
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 7.1e-306 1053.9 925 59.1
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 1.5e-303 1046.2 930 59.9
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 6.2e-302 1040.8 853 63.5
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 1.6e-297 1026.2 911 58.6
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 1.7e-296 1022.7 1036 54.7
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 1.7e-296 1022.7 938 57.9
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 4.3e-295 1018.1 923 60.1
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 3.6e-294 1015.0 856 62.6
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 1.5e-292 1009.6 926 57.9
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 9.3e-290 1000.3 919 57.3
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 7.1e-282 974.2 969 55.4
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 9.3e-282 973.8 975 55.5
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 3.5e-281 971.8 1169 49.1
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 3.4e-276 955.3 796 61.9
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 4.6e-265 918.3 753 64.5
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 3.0e-256 889.0 945 52.9
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 5.7e-255 884.8 922 52.1
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 1.1e-253 880.6 769 59.0
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 4.5e-252 875.2 689 67.1
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 2.5e-250 869.4 983 49.3
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 1.1e-247 860.5 822 54.3
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 4.4e-247 858.6 875 52.6
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 8.2e-238 827.8 1066 45.0
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 4.2e-218 762.3 717 57.5
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 2.0e-199 700.3 621 60.5
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 2.3e-195 686.8 670 57.2
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 4.3e-186 656.0 405 79.8
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 6.4e-182 642.1 750 49.1
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.3e-153 548.1 413 69.0
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 2.4e-152 543.9 367 75.2
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 1.2e-151 541.6 384 72.4
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 1.5e-146 524.6 465 62.6
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 7.4e-138 495.7 612 48.7
vmacro17836 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.8e-131 474.6 709 42.5
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 5.3e-128 463.0 561 48.5
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 7.5e-122 442.6 466 51.3
HPP92_008553 Vanilla planifolia HOM05D004101 ORTHO05D005221 2.8e-121 440.7 284 74.6
Oeu006618.1 Olea europaea HOM05D004101 ORTHO05D005221 5.5e-117 426.4 278 76.6
Lsat_1_v5_gn_5_98501 Lactuca sativa HOM05D004101 ORTHO05D007752 5.4e-112 409.8 280 70.0
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 7.7e-103 379.4 328 58.5
Migut.N00699 Erythranthe guttata HOM05D004101 ORTHO05D005221 6.1e-100 369.8 321 57.3
Cpa.g.sc24.85 Carica papaya HOM05D004101 ORTHO05D005221 8.3e-89 332.8 212 77.8
CDE02G4445 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 8.1e-52 209.9 210 51.4
BcaB04g18154 Brassica carinata HOM05D004101 ORTHO05D005221 1.8e-51 208.8 167 65.9
QL93p1879_0034 Quercus lobata HOM05D004101 ORTHO05D005221 1.4e-48 199.1 128 72.7
vmacro14430 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.0e-46 193.0 139 64.7
A09p34730 Brassica napus HOM05D004101 ORTHO05D005221 1.2e-42 179.5 144 66.0
Aqoxy2G00645 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 6.7e-38 163.7 171 50.3
SEGI_28351 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 6.9e-35 153.7 105 72.4
vmacro14429 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 7.2e-32 143.7 276 41.3
PSO017G1167 Papaver somniferum HOM05D004101 ORTHO05D005221 7.9e-31 140.2 111 59.5
SEGI_18218 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 2.5e-29 135.2 76 84.2
SEGI_38945 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 1.4e-24 119.4 86 62.8
Medtr5g080490 Medicago truncatula HOM05D004101 ORTHO05D005221 5.9e-18 97.4 71 73.2
Cpa.g.sc24.79 Carica papaya HOM05D004101 ORTHO05D005221 7.7e-18 97.1 66 68.2
SMO200G0098 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 5.7e-13 80.9 89 51.7
BolC1t03898H Brassica oleracea HOM05D010251 ORTHO05D005221 1.7e-12 79.3 160 34.4
COL.COLO4_06915 Corchorus olitorius HOM05D004101 ORTHO05D005221 1.4e-11 76.3 42 85.7
Pp3c3_10160 Physcomitrium patens HOM05D004101 ORTHO05D005221 4.1e-11 74.7 129 32.6
CDE08G1083 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 2.6e-10 72.0 69 50.7
Lsat_1_v5_gn_5_153621 Lactuca sativa HOM05D004101 ORTHO05D005221 1.0e-09 70.1 64 54.7
Os07g0406600 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 5.0e-09 67.8 45 66.7
SHI03798 Sapria himalayana HOM05D004101 ORTHO05D005221 5.0e-09 67.8 98 43.9
VMungo0251G0072 Vigna mungo HOM05D004101 ORTHO05D005221 2.5e-08 65.5 35 80.0
SMO200G0135 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 3.2e-08 65.1 62 53.2
Medtr1g105770 Medicago truncatula HOM05D004101 ORTHO05D005221 4.2e-08 64.7 89 47.2
BolC2t10203H Brassica oleracea HOM05D004101 ORTHO05D027158 3.6e-07 61.6 53 54.7
BolC2t10210H Brassica oleracea HOM05D004101 ORTHO05D027158 3.6e-07 61.6 53 54.7
SMO209G0008 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 2.3e-06 58.9 52 57.7
A01p24750 Brassica napus HOM05D004101 ORTHO05D027158 5.2e-06 57.8 53 52.8
VMungo0251G2090 Vigna mungo HOM05D003461 ORTHO05D006812 6.7e-06 57.4 32 75.0


User provided reference genes

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