Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 6.2e-194 680.6 349 100.0
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 5.2e-140 501.5 269 92.6
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 1.3e-138 496.9 272 90.8
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 9.4e-134 480.7 268 89.2
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 3.6e-133 478.8 269 88.5
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 4.7e-133 478.4 269 87.4
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 2.6e-131 472.6 269 87.0
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 2.0e-128 463.0 269 84.8
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 5.9e-128 461.5 269 85.1
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 1.3e-127 460.3 269 85.1
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 1.7e-122 443.4 293 74.4
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 4.9e-122 441.8 269 79.2
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 4.5e-120 435.3 254 84.6
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 1.7e-119 433.3 269 77.7
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 3.8e-119 432.2 349 64.5
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 5.0e-119 431.8 269 76.6
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 1.1e-118 430.6 293 71.3
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 1.5e-118 430.3 269 76.6
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 2.5e-118 429.5 269 76.6
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 4.3e-118 428.7 269 77.3
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 4.3e-118 428.7 269 75.8
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 4.3e-118 428.7 292 72.3
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 5.6e-118 428.3 292 71.9
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.6e-117 426.8 269 75.1
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 2.1e-117 426.4 269 76.2
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 6.1e-117 424.9 269 75.5
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 5.2e-116 421.8 268 75.0
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 6.8e-116 421.4 278 73.7
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 6.8e-116 421.4 268 75.0
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 8.9e-116 421.0 268 75.4
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 2.0e-115 419.9 269 74.3
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 2.0e-115 419.9 292 71.9
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 3.4e-115 419.1 269 74.3
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 5.7e-115 418.3 292 71.6
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 5.7e-115 418.3 292 71.6
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 9.8e-115 417.5 269 72.5
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 8.3e-114 414.5 278 71.6
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 1.4e-113 413.7 269 74.0
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 1.4e-113 413.7 269 72.1
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 3.2e-113 412.5 269 72.9
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 3.2e-113 412.5 268 73.1
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 9.2e-113 411.0 269 74.0
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 1.2e-112 410.6 314 65.6
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 1.6e-112 410.2 277 71.5
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 2.7e-112 409.5 328 64.6
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 1.0e-111 407.5 292 67.5
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 2.3e-111 406.4 277 69.0
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 2.3e-111 406.4 293 66.9
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 5.0e-111 405.2 269 72.5
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 1.1e-110 404.1 269 71.4
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 1.5e-110 403.7 277 69.7
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 1.9e-110 403.3 269 72.1
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 7.3e-110 401.4 268 71.6
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 1.2e-109 400.6 268 71.3
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 1.2e-109 400.6 269 71.4
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 2.1e-109 399.8 269 71.7
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 2.8e-109 399.4 268 69.4
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 2.8e-109 399.4 268 71.6
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 3.6e-109 399.1 268 71.3
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 3.6e-109 399.1 268 70.5
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 4.7e-109 398.7 268 71.3
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 4.7e-109 398.7 268 71.3
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 6.2e-109 398.3 269 69.9
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 1.0e-108 397.5 268 70.9
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 1.0e-108 397.5 269 70.6
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 1.4e-108 397.1 268 70.1
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 1.4e-108 397.1 269 69.5
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 1.8e-108 396.7 269 69.1
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 2.3e-108 396.4 269 69.9
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 2.3e-108 396.4 269 69.9
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 3.1e-108 396.0 269 69.5
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 4.0e-108 395.6 268 69.8
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 4.0e-108 395.6 269 68.4
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 8.9e-108 394.4 268 69.8
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 8.9e-108 394.4 277 69.3
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 1.2e-107 394.0 269 69.5
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 1.2e-107 394.0 269 69.5
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 1.2e-107 394.0 269 69.5
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 1.2e-107 394.0 277 67.9
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 1.5e-107 393.7 292 66.1
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 1.5e-107 393.7 268 69.4
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 2.0e-107 393.3 269 69.1
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 2.0e-107 393.3 269 69.5
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 2.0e-107 393.3 269 69.5
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 2.0e-107 393.3 278 68.0
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 2.9e-106 389.4 319 61.4
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 8.3e-106 387.9 264 69.7
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 1.9e-105 386.7 269 69.9
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 4.1e-105 385.6 268 67.5
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 1.6e-104 383.6 263 71.1
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 2.7e-104 382.9 277 66.8
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 1.0e-103 380.9 269 67.7
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 6.6e-103 378.3 269 69.1
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 1.1e-102 377.5 263 70.0
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 3.3e-102 375.9 269 67.3
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 1.2e-101 374.0 292 61.3
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 2.1e-101 373.2 237 75.5
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 5.4e-97 358.6 356 53.7
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 2.1e-96 356.7 243 70.4
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 7.3e-94 348.2 269 63.9
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 2.1e-93 346.7 278 60.1
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 6.2e-93 345.1 277 64.3
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 5.2e-92 342.0 292 58.2
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 5.8e-91 338.6 201 82.6
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 4.9e-90 335.5 223 72.6
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 3.2e-89 332.8 292 57.5
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 3.5e-88 329.3 271 59.4
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 6.0e-88 328.6 226 72.1
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 6.6e-87 325.1 470 42.1
CANSAT21G0168 Cannabis sativa HOM05D005356 ORTHO05D006596 8.1e-85 318.2 217 69.1
HPP92_022764 Vanilla planifolia HOM05D005356 ORTHO05D006596 3.1e-84 316.2 220 64.5
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 5.4e-81 305.4 264 62.5
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 7.1e-81 305.1 200 74.5
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.1e-78 297.7 269 54.3
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 2.1e-77 293.5 269 54.3
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 3.8e-74 282.7 269 50.6
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 4.6e-72 275.8 292 48.6
CANSAT21G1370 Cannabis sativa HOM05D005356 ORTHO05D006596 7.9e-72 275.0 172 73.8
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 2.3e-71 273.5 242 53.7
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 5.6e-70 268.9 293 50.2
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 2.2e-66 256.9 161 77.0
Pp3c23_14070 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.3e-63 247.7 245 51.0
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 1.4e-60 237.7 222 53.2
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 1.6e-53 214.2 148 70.9
Actinidia04557 Actinidia chinensis HOM05D005356 ORTHO05D006596 2.2e-53 213.8 224 52.7
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 1.9e-49 200.7 127 78.7
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 3.6e-48 196.4 161 63.4
Thhalv10016106m.g Eutrema salsugineum HOM05D005356 ORTHO05D006596 7.4e-46 188.7 117 70.1
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 3.7e-45 186.4 136 71.3
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 1.8e-44 184.1 136 68.4
Glyma.09G223400 Glycine max HOM05D005356 ORTHO05D006596 9.4e-41 171.8 90 87.8
Pp3c24_840 Physcomitrium patens HOM05D005356 ORTHO05D006596 4.4e-38 162.9 151 51.7
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 7.2e-33 145.6 277 34.7
CSS0037967 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 1.5e-30 137.9 84 75.0
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 8.0e-24 115.5 239 31.4
CBR_g17686 Chara braunii HOM05D005356 ORTHO05D006596 1.4e-23 114.8 98 51.0
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 7.5e-22 109.0 267 30.0
Ca_25291_v3 Cicer arietinum L. HOM05D002341 ORTHO05D034046 1.8e-20 104.4 64 79.7
AT5G17523 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 1.3e-18 98.2 76 68.4
Zm00001eb003380 Zea mays HOM05D001522 ORTHO05D001547 6.5e-18 95.9 83 62.7
Pp3c21_10850 Physcomitrium patens HOM05D005356 ORTHO05D310352 2.2e-13 80.9 184 29.3
Ca_07731_v3 Cicer arietinum L. HOM05D000942 ORTHO05D000918 3.7e-13 80.1 66 66.7
Ca_13114_v3 Cicer arietinum L. HOM05D000924 ORTHO05D001209 1.6e-08 64.7 74 59.5
Ca_03946_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 1.4e-07 61.6 74 55.4
Ca_14484_v3 Cicer arietinum L. HOM05D005823 ORTHO05D007536 5.7e-06 56.2 65 50.8


User provided reference genes

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