Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_19611_v3 Cicer arietinum L. HOM05D005581 ORTHO05D006792 2.6e-121 438.7 218 100.0
TPR.G39154 Trifolium pratense HOM05D005581 ORTHO05D006792 3.5e-94 348.6 204 85.8
Medtr7g030020 Medicago truncatula HOM05D005581 ORTHO05D006792 5.8e-89 331.3 204 81.9
Medtr7g038730 Medicago truncatula HOM05D005581 ORTHO05D006792 5.8e-89 331.3 204 81.9
Glyma.13G116200 Glycine max HOM05D005581 ORTHO05D006792 9.5e-84 313.9 192 79.2
Psat3g165640 Pisum sativum HOM05D005581 ORTHO05D006792 8.1e-83 310.8 207 75.4
arahy.Tifrunner.gnm1.ann1.2M0NJC Arachis hypogaea HOM05D005581 ORTHO05D006792 2.3e-82 309.3 194 78.4
Lalb_Chr05g0228941 Lupinus albus HOM05D005581 ORTHO05D006792 3.1e-82 308.9 208 73.6
arahy.Tifrunner.gnm1.ann1.E9CGF1 Arachis hypogaea HOM05D005581 ORTHO05D006792 5.2e-82 308.1 194 78.4
arahy.Tifrunner.gnm1.ann1.B679M5 Arachis hypogaea HOM05D005581 ORTHO05D006792 6.8e-82 307.8 209 72.7
Lj2g0014392 Lotus japonicus HOM05D005581 ORTHO05D006792 8.9e-82 307.4 192 78.1
VMungo1215G0614 Vigna mungo HOM05D005581 ORTHO05D006792 1.5e-81 306.6 178 80.9
arahy.Tifrunner.gnm1.ann1.UYM2HQ Arachis hypogaea HOM05D005581 ORTHO05D006792 3.4e-81 305.4 209 72.2
Lj2g0006948 Lotus japonicus HOM05D005581 ORTHO05D006792 9.9e-81 303.9 180 80.0
Phvul.003G125600 Phaseolus vulgaris HOM05D005581 ORTHO05D006792 2.9e-80 302.4 199 74.9
GSVIVG01032543001 Vitis vinifera HOM05D005581 ORTHO05D006792 5.4e-79 298.1 189 75.7
Cfa007475 Carpinus fangiana HOM05D005581 ORTHO05D006792 4.6e-78 295.0 174 77.0
Prupe.3G278300 Prunus persica HOM05D005581 ORTHO05D006792 3.9e-77 292.0 175 77.7
Lalb_Chr21g0319231 Lupinus albus HOM05D005581 ORTHO05D006792 5.1e-77 291.6 215 67.4
QL02p078462 Quercus lobata HOM05D005581 ORTHO05D006792 5.1e-77 291.6 200 71.5
Eucgr.J02171 Eucalyptus grandis HOM05D005581 ORTHO05D006792 1.5e-76 290.0 193 73.1
Hund12510 Selenicereus undatus HOM05D005581 ORTHO05D006792 1.5e-76 290.0 193 73.1
Nn3g17019 Nelumbo nucifera HOM05D005581 ORTHO05D006792 3.3e-76 288.9 191 71.7
Potri.001G470300 Populus trichocarpa HOM05D005581 ORTHO05D006792 3.3e-76 288.9 193 72.0
RcHm_v2.0_Chr2g0170291 Rosa chinensis HOM05D005581 ORTHO05D006792 4.3e-76 288.5 178 75.3
Ciclev10012718m.g Citrus clementina HOM05D005581 ORTHO05D006792 5.6e-76 288.1 196 71.4
TAR629G0716 Trochodendron aralioides HOM05D005581 ORTHO05D006792 5.6e-76 288.1 194 70.1
CiPaw.04G022300 Carya illinoinensis HOM05D005581 ORTHO05D006792 1.2e-75 287.0 194 71.6
PGR083G1021 Punica granatum HOM05D005581 ORTHO05D006792 1.2e-75 287.0 194 71.6
Manes.15G178800 Manihot esculenta HOM05D005581 ORTHO05D006792 2.8e-75 285.8 190 73.2
Cpa.g.sc14.80 Carica papaya HOM05D005581 ORTHO05D006792 3.6e-75 285.4 194 71.6
Sabra16G0319200 Salix brachista HOM05D005581 ORTHO05D006792 1.8e-74 283.1 193 70.5
FAN05G2284 Fragaria x ananassa HOM05D005581 ORTHO05D006792 1.2e-73 280.4 178 74.2
MBI15_g35865_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 1.2e-73 280.4 192 69.8
Actinidia36059 Actinidia chinensis HOM05D005581 ORTHO05D006792 1.5e-73 280.0 189 70.9
CSS0034562 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 2.0e-73 279.6 176 74.4
CSS0041908 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 2.0e-73 279.6 176 74.4
Ciclev10016724m.g Citrus clementina HOM05D005581 ORTHO05D006792 2.0e-73 279.6 196 69.4
Hma1.2p1_1975F.1_g309690 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 2.6e-73 279.3 178 72.5
FvH4_6g50030 Fragaria vesca HOM05D005581 ORTHO05D006792 3.4e-73 278.9 178 73.6
FAN09G0871 Fragaria x ananassa HOM05D005581 ORTHO05D006792 3.4e-73 278.9 178 73.6
FAN14G0942 Fragaria x ananassa HOM05D005581 ORTHO05D006792 3.4e-73 278.9 178 73.6
Thecc.04G002800 Theobroma cacao HOM05D005581 ORTHO05D006792 4.4e-73 278.5 195 68.7
MD17G1040700 Malus domestica HOM05D005581 ORTHO05D006792 9.9e-73 277.3 186 72.0
PSO832G0275 Papaver somniferum HOM05D005581 ORTHO05D006792 9.9e-73 277.3 168 73.8
PSO591G0467 Papaver somniferum HOM05D005581 ORTHO05D006792 1.7e-72 276.6 197 68.5
MELO3C033644.2 Cucumis melo HOM05D005581 ORTHO05D006792 2.9e-72 275.8 178 70.8
CsaV3_5G037490 Cucumis sativus L. HOM05D005581 ORTHO05D006792 3.8e-72 275.4 178 70.2
Sed0016453 Sechium edule HOM05D005581 ORTHO05D006792 4.9e-72 275.0 199 65.3
EL10Ac7g18001 Beta vulgaris HOM05D005581 ORTHO05D006792 6.4e-72 274.6 219 62.1
Dinv33676 Davidia involucrata HOM05D005581 ORTHO05D006792 8.4e-72 274.2 197 66.5
Sc06g0002610 Simmondsia chinensis HOM05D005581 ORTHO05D006792 1.4e-71 273.5 200 66.5
Duzib187G0556 Durio zibethinus HOM05D005581 ORTHO05D006792 4.2e-71 271.9 197 67.5
COL.COLO4_06153 Corchorus olitorius HOM05D000793 ORTHO05D000783 1.2e-70 270.4 194 66.0
TWI12G0742 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 1.2e-70 270.4 193 70.5
SHI25585 Sapria himalayana HOM05D005581 ORTHO05D006792 2.1e-70 269.6 192 67.7
Nitab4.5_0004905g0030 Nicotiana tabacum HOM05D000793 ORTHO05D006792 3.5e-70 268.9 200 65.5
PSO063G2781 Papaver somniferum HOM05D005581 ORTHO05D006792 3.5e-70 268.9 200 64.5
RhsimUnG0168100 Rhododendron simsii HOM05D005581 ORTHO05D006792 3.5e-70 268.9 176 71.0
ATR0624G029 Amborella trichopoda HOM05D005581 ORTHO05D006792 4.6e-70 268.5 191 68.1
MSTRG.23979 Avicennia marina HOM05D005581 ORTHO05D006792 7.8e-70 267.7 195 67.7
Nitab4.5_0007185g0080 Nicotiana tabacum HOM05D005581 ORTHO05D006792 1.0e-69 267.3 200 65.5
Actinidia06044 Actinidia chinensis HOM05D005581 ORTHO05D006792 1.3e-69 266.9 207 64.7
Duzib147G0516 Durio zibethinus HOM05D005581 ORTHO05D006792 1.3e-69 266.9 197 66.0
Sopen02g032000 Solanum pennellii HOM05D005581 ORTHO05D006792 1.3e-69 266.9 198 65.2
DCAR_003657 Daucus carota HOM05D005581 ORTHO05D006792 1.7e-69 266.5 195 66.7
Solyc02g087250.4 Solanum lycopersicum HOM05D000793 ORTHO05D000783 1.7e-69 266.5 198 65.2
CAN.G206.63 Capsicum annuum HOM05D005581 ORTHO05D006792 3.0e-69 265.8 200 65.0
Atru.BG.224.p Acer truncatum HOM05D005581 ORTHO05D006792 3.9e-69 265.4 165 74.5
Gohir.A05G361700 Gossypium hirsutum HOM05D005581 ORTHO05D006792 3.9e-69 265.4 177 67.8
PGSC0003DMG400001392 Solanum tuberosum HOM05D005581 ORTHO05D006792 3.9e-69 265.4 200 64.0
Zm00001eb279970 Zea mays HOM05D005581 ORTHO05D006792 3.9e-69 265.4 167 69.5
Peaxi162Scf00129g00828 Petunia axillaris HOM05D000793 ORTHO05D000783 5.1e-69 265.0 199 65.3
CDE06G0044 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 6.6e-69 264.6 194 63.9
Oeu062376.1 Olea europaea HOM05D005581 ORTHO05D006792 1.1e-68 263.8 201 66.7
HPP92_026859 Vanilla planifolia HOM05D005581 ORTHO05D006792 1.1e-68 263.8 197 63.5
Os06g0238300 Oryza sativa ssp. japonica HOM05D005581 ORTHO05D006792 1.9e-68 263.1 174 67.2
Gohir.D07G224600 Gossypium hirsutum HOM05D005581 ORTHO05D006792 3.3e-68 262.3 173 67.6
Gorai.001G259000 Gossypium raimondii HOM05D005581 ORTHO05D006792 3.3e-68 262.3 173 67.6
Gohir.D04G052800 Gossypium hirsutum HOM05D005581 ORTHO05D006792 7.3e-68 261.2 177 67.2
Gohir.A07G217500 Gossypium hirsutum HOM05D005581 ORTHO05D006792 9.6e-68 260.8 173 67.1
Hma1.2p1_0375F.1_g139010 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 9.6e-68 260.8 197 64.0
Aqoxy3G03110 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 1.3e-67 260.4 194 65.5
ClCG00G001710 Citrullus lanatus HOM05D005581 ORTHO05D006792 2.1e-67 259.6 213 62.0
ClCG09G018630 Citrullus lanatus HOM05D005581 ORTHO05D006792 2.1e-67 259.6 213 62.0
Gorai.012G059200 Gossypium raimondii HOM05D005581 ORTHO05D006792 3.6e-67 258.8 177 66.7
Aqoxy3G03108 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 4.8e-67 258.5 167 70.7
AUR62022121 Chenopodium quinoa HOM05D005581 ORTHO05D006792 1.1e-66 257.3 178 68.0
Oeu031508.1 Olea europaea HOM05D005581 ORTHO05D006792 1.1e-66 257.3 198 64.6
Migut.H00163 Erythranthe guttata HOM05D005581 ORTHO05D006792 1.4e-66 256.9 200 63.5
ECA240G2828 Erigeron canadensis HOM05D005581 ORTHO05D006792 2.4e-66 256.1 175 68.0
SEGI_16176 Sequoiadendron giganteum HOM05D005581 ORTHO05D006792 4.0e-66 255.4 173 67.1
Hund20033 Selenicereus undatus HOM05D005581 ORTHO05D006792 6.9e-66 254.6 197 62.9
Psat3g011960 Pisum sativum HOM05D005581 ORTHO05D006792 2.0e-65 253.1 168 76.2
DCAR_011192 Daucus carota HOM05D005581 ORTHO05D006792 2.6e-65 252.7 212 61.3
AUR62001208 Chenopodium quinoa HOM05D005581 ORTHO05D006792 4.5e-65 251.9 178 65.7
Lsat_1_v5_gn_0_16520 Lactuca sativa HOM05D005581 ORTHO05D006792 4.5e-65 251.9 171 67.3
SGA_v2.0_scaffold135G34832 Striga asiatica HOM05D005581 ORTHO05D006792 4.5e-65 251.9 198 64.6
Carub.0003s2629 Capsella rubella HOM05D005581 ORTHO05D006792 5.8e-65 251.5 207 60.4
SalBow1G8695 Salvia bowleyana HOM05D005581 ORTHO05D006792 1.3e-64 250.4 177 67.2
Thhalv10027934m.g Eutrema salsugineum HOM05D005581 ORTHO05D006792 8.4e-64 247.7 175 66.9
CARHR102620 Cardamine hirsuta HOM05D005581 ORTHO05D006792 2.4e-63 246.1 194 63.4
Sp7g01930 Schrenkiella parvula HOM05D005581 ORTHO05D006792 1.6e-62 243.4 175 66.3
PSO832G2358 Papaver somniferum HOM05D005581 ORTHO05D006792 2.1e-62 243.0 193 62.2
EL10Ac7g18000 Beta vulgaris HOM05D005581 ORTHO05D006792 2.7e-62 242.7 206 58.7
AT2G04690 Arabidopsis thaliana HOM05D005581 ORTHO05D006792 3.5e-62 242.3 175 66.9
AL3G42310 Arabidopsis lyrata HOM05D005581 ORTHO05D006792 4.6e-62 241.9 175 66.3
BcaB06g27424 Brassica carinata HOM05D005581 ORTHO05D006792 1.0e-61 240.7 196 61.7
C04p46650 Brassica napus HOM05D005581 ORTHO05D006792 2.3e-61 239.6 197 59.9
BolC4t26253H Brassica oleracea HOM05D005581 ORTHO05D006792 2.3e-61 239.6 197 59.9
BraA04t16955Z Brassica rapa HOM05D005581 ORTHO05D006792 8.7e-61 237.7 197 59.9
A04p12950 Brassica napus HOM05D005581 ORTHO05D006792 1.5e-60 236.9 197 59.9
Lj7A408G12 Lonicera japonica HOM05D005581 ORTHO05D006792 1.5e-60 236.9 145 72.4
TWI12G0286 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 1.5e-60 236.9 194 63.4
vmacro05787 Vaccinium macrocarpon HOM05D005581 ORTHO05D006792 1.8e-58 229.9 152 71.1
MD09G1040100 Malus domestica HOM05D005581 ORTHO05D006792 3.4e-57 225.7 297 44.8
THA.LOC104823921 Tarenaya hassleriana HOM05D005581 ORTHO05D006792 1.3e-56 223.8 204 55.9
SMO356G0730 Selaginella moellendorffii HOM05D005581 ORTHO05D006792 2.1e-51 206.5 167 58.7
Atru.chr8.2410 Acer truncatum HOM05D005581 ORTHO05D006792 1.8e-50 203.4 125 72.0
AagrBONN_evm.TU.Sc2ySwM_368.1768 Anthoceros agrestis HOM05D005581 ORTHO05D006792 4.0e-50 202.2 176 56.2
Aa31LG9G1540 Aethionema arabicum HOM05D005581 ORTHO05D006792 1.2e-49 200.7 158 65.2
Haze_14640 Corylus avellana HOM05D005581 ORTHO05D006792 8.4e-48 194.5 112 78.6
Cc07_g02660 Coffea canephora HOM05D005581 ORTHO05D006792 1.4e-47 193.7 169 58.6
Mapoly0035s0056 Marchantia polymorpha HOM05D005581 ORTHO05D006792 1.9e-47 193.4 164 51.2
Pp3c1_40840 Physcomitrium patens HOM05D005581 ORTHO05D006792 3.1e-42 176.0 166 50.0
CBR_g36833 Chara braunii HOM05D005581 ORTHO05D006792 1.8e-37 160.2 194 43.3
Migut.N00270 Erythranthe guttata HOM05D005581 ORTHO05D006792 5.9e-33 145.2 171 46.2
Migut.H00166 Erythranthe guttata HOM05D005581 ORTHO05D006792 1.0e-32 144.4 159 46.5
PRCOL_00005184 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 2.9e-32 142.9 165 43.0
MSTRG.21916 Avicennia marina HOM05D005581 ORTHO05D006792 3.8e-32 142.5 168 47.6
Migut.H00162 Erythranthe guttata HOM05D005581 ORTHO05D006792 1.4e-31 140.6 158 44.9
Glyma.17G043600 Glycine max HOM05D005581 ORTHO05D006792 2.3e-29 133.3 74 85.1
Cre10.g440700 Chlamydomonas reinhardtii HOM05D005581 ORTHO05D006792 4.1e-26 122.5 186 33.9
SalBow3G2496 Salvia bowleyana HOM05D005581 ORTHO05D006792 2.2e-24 116.7 168 39.3
HPP92_018422 Vanilla planifolia HOM05D005581 ORTHO05D006792 1.2e-17 94.4 65 60.0
PRCOL_00002387 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 1.6e-14 84.0 165 32.7
MBI15_g46244_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 1.3e-11 74.3 193 32.1
CDE06G0755 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 2.8e-11 73.2 59 61.0
HanXRQChr17g0548091 Helianthus annuus HOM05D005581 ORTHO05D006792 6.3e-11 72.0 62 54.8
arahy.Tifrunner.gnm1.ann1.C3UJQ4 Arachis hypogaea HOM05D005581 ORTHO05D006792 1.7e-08 63.9 68 51.5


User provided reference genes

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