Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_05043_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 5.9e-142 507.7 286 100.0
Ca_19594_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 5.9e-142 507.7 286 100.0
Medtr5g046750 Medicago truncatula HOM05D004533 ORTHO05D005347 9.9e-97 357.5 296 76.4
Psat2g098360 Pisum sativum HOM05D004533 ORTHO05D005347 2.0e-89 333.2 305 69.2
TPR.G38582 Trifolium pratense HOM05D004533 ORTHO05D005347 4.2e-87 325.5 302 73.5
Phvul.003G039500 Phaseolus vulgaris HOM05D004533 ORTHO05D005347 1.1e-76 290.8 342 62.3
Lj2g0015000 Lotus japonicus HOM05D004533 ORTHO05D005347 1.5e-76 290.4 318 66.4
Lalb_Chr17g0341371 Lupinus albus HOM05D004533 ORTHO05D005347 2.8e-75 286.2 308 69.2
Lalb_Chr10g0099071 Lupinus albus HOM05D004533 ORTHO05D005347 7.9e-70 268.1 321 64.5
Glyma.01G063800 Glycine max HOM05D004533 ORTHO05D005347 1.8e-66 256.9 353 57.8
Haze_11876 Corylus avellana HOM05D004533 ORTHO05D005347 3.0e-61 239.6 320 57.5
Gohir.D13G084000 Gossypium hirsutum HOM05D004533 ORTHO05D005347 8.7e-61 238.0 320 58.1
Gorai.013G095800 Gossypium raimondii HOM05D004533 ORTHO05D005347 8.7e-61 238.0 320 58.1
Glyma.02G121400 Glycine max HOM05D004533 ORTHO05D005347 3.3e-60 236.1 359 55.2
Gohir.A13G084500 Gossypium hirsutum HOM05D004533 ORTHO05D005347 5.7e-60 235.3 320 57.5
Dinv20147 Davidia involucrata HOM05D004533 ORTHO05D005347 9.0e-58 228.0 305 58.0
QL03p073504 Quercus lobata HOM05D004533 ORTHO05D005347 1.5e-57 227.3 322 59.0
Duzib248G0866 Durio zibethinus HOM05D004533 ORTHO05D005347 3.4e-57 226.1 316 57.6
VMungo1215G1442 Vigna mungo HOM05D004533 ORTHO05D005347 2.2e-56 223.4 232 69.0
Gohir.A03G105900 Gossypium hirsutum HOM05D004533 ORTHO05D005347 2.9e-56 223.0 318 50.0
Manes.01G025900 Manihot esculenta HOM05D004533 ORTHO05D005347 3.8e-56 222.6 324 56.2
CiPaw.05G123000 Carya illinoinensis HOM05D004533 ORTHO05D005347 1.1e-55 221.1 307 57.3
Duzib251G0596 Durio zibethinus HOM05D004533 ORTHO05D005347 1.4e-55 220.7 324 57.1
Cfa008857 Carpinus fangiana HOM05D004533 ORTHO05D005347 4.2e-55 219.2 317 55.5
Duzib268G0904 Durio zibethinus HOM05D004533 ORTHO05D005347 4.2e-55 219.2 324 54.3
Gohir.D02G131100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 7.2e-55 218.4 304 57.9
Thecc.02G326400 Theobroma cacao HOM05D004533 ORTHO05D005347 7.2e-55 218.4 324 56.8
Sabra10G0118800 Salix brachista HOM05D004533 ORTHO05D005347 2.7e-54 216.5 333 54.7
Gorai.005G147000 Gossypium raimondii HOM05D004533 ORTHO05D005347 4.6e-54 215.7 303 57.8
TAR371G0131 Trochodendron aralioides HOM05D004533 ORTHO05D005347 5.1e-53 212.2 291 58.8
Manes.05G112100 Manihot esculenta HOM05D004533 ORTHO05D005347 3.1e-50 203.0 321 53.9
Potri.010G154200 Populus trichocarpa HOM05D004533 ORTHO05D005347 5.3e-50 202.2 332 53.0
CiPaw.06G093700 Carya illinoinensis HOM05D004533 ORTHO05D005347 2.0e-49 200.3 333 52.3
Cc11_g11730 Coffea canephora HOM05D004533 ORTHO05D005347 2.0e-49 200.3 303 53.1
Dinv34043 Davidia involucrata HOM05D004533 ORTHO05D005347 5.9e-49 198.7 284 58.5
Ciclev10032087m.g Citrus clementina HOM05D004533 ORTHO05D005347 1.0e-48 198.0 321 51.7
Prupe.1G290400 Prunus persica HOM05D004533 ORTHO05D005347 2.2e-48 196.8 351 51.9
CSS0048067 Camellia sinensis var. sinensis HOM05D004533 ORTHO05D005347 5.0e-48 195.7 319 55.5
arahy.Tifrunner.gnm1.ann1.PV72KB Arachis hypogaea HOM05D004533 ORTHO05D005347 3.2e-47 193.0 359 48.7
Potri.008G098200 Populus trichocarpa HOM05D004533 ORTHO05D005347 7.2e-47 191.8 331 52.3
Eucgr.B03139 Eucalyptus grandis HOM05D004533 ORTHO05D005347 1.6e-46 190.7 333 50.8
arahy.Tifrunner.gnm1.ann1.NK9Z7F Arachis hypogaea HOM05D004533 ORTHO05D005347 3.6e-46 189.5 364 47.5
Gorai.008G175700 Gossypium raimondii HOM05D004533 ORTHO05D005347 6.1e-46 188.7 280 47.5
Gohir.A12G159800 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.0e-45 188.0 281 55.9
Hma1.2p1_3075F.1_g332390 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 1.8e-45 187.2 334 45.2
Gohir.D12G163100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 3.0e-45 186.4 277 55.6
Nn4g23503 Nelumbo nucifera HOM05D004533 ORTHO05D005347 6.7e-45 185.3 311 50.8
Sabra08G0074200 Salix brachista HOM05D004533 ORTHO05D005347 1.5e-44 184.1 335 52.5
Aqoxy3G03701 Aquilegia oxysepala HOM05D004533 ORTHO05D005347 4.4e-44 182.6 326 51.5
Oeu048133.1 Olea europaea HOM05D004533 ORTHO05D005347 1.7e-43 180.6 285 49.8
Oeu048134.1 Olea europaea HOM05D004533 ORTHO05D005347 1.7e-43 180.6 285 49.8
Rhsim09G0125000 Rhododendron simsii HOM05D004533 ORTHO05D005347 1.7e-43 180.6 295 53.6
TWI79G0987 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 2.2e-43 180.3 300 52.7
TWI75G1153 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 4.8e-43 179.1 295 51.9
TWI31G0640 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 4.1e-42 176.0 292 52.1
COL.COLO4_27845 Corchorus olitorius HOM05D004533 ORTHO05D005347 5.3e-42 175.6 339 48.4
TAR629G1049 Trochodendron aralioides HOM05D004533 ORTHO05D005347 6.9e-42 175.3 307 44.0
MD16G1058700 Malus domestica HOM05D004533 ORTHO05D005347 1.5e-41 174.1 317 50.8
FAN22G0793 Fragaria x ananassa HOM05D004533 ORTHO05D005347 3.8e-40 169.5 333 51.4
Cpa.g.sc1.160 Carica papaya HOM05D004533 ORTHO05D005347 1.1e-39 167.9 324 50.3
Atru.chr11.1592 Acer truncatum HOM05D004533 ORTHO05D005347 1.4e-39 167.5 322 50.6
FvH4_4g29630 Fragaria vesca HOM05D004533 ORTHO05D005347 3.2e-39 166.4 335 50.4
FAN12G3098 Fragaria x ananassa HOM05D004533 ORTHO05D005347 3.2e-39 166.4 335 50.4
FAN17G0049 Fragaria x ananassa HOM05D004533 ORTHO05D005347 4.2e-39 166.0 333 50.8
MD13G1059400 Malus domestica HOM05D004533 ORTHO05D005347 4.2e-39 166.0 319 51.4
FAN07G1881 Fragaria x ananassa HOM05D004533 ORTHO05D005347 9.4e-39 164.9 336 50.3
Actinidia26533 Actinidia chinensis HOM05D004533 ORTHO05D005347 2.7e-38 163.3 298 51.3
Hma1.2p1_0473F.1_g160260 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 6.1e-38 162.2 296 41.2
Actinidia19907 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.0e-37 161.4 278 54.7
ClCG08G010520 Citrullus lanatus HOM05D004533 ORTHO05D005347 1.4e-37 161.0 326 38.3
MELO3C011411.2 Cucumis melo HOM05D004533 ORTHO05D005347 1.8e-37 160.6 324 37.7
Oeu028724.1 Olea europaea HOM05D004533 ORTHO05D005347 5.2e-37 159.1 295 47.1
Sed0020971 Sechium edule HOM05D004533 ORTHO05D005347 8.8e-37 158.3 317 38.2
THA.LOC104798855 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 8.8e-37 158.3 306 51.0
THA.LOC104803161 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 8.8e-37 158.3 306 51.0
THA.LOC104822894 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 8.8e-37 158.3 306 51.0
MSTRG.2297 Avicennia marina HOM05D004533 ORTHO05D005347 2.6e-36 156.8 330 39.4
RcHm_v2.0_Chr4g0437861 Rosa chinensis HOM05D004533 ORTHO05D005347 3.3e-36 156.4 329 48.9
TAR374G1471 Trochodendron aralioides HOM05D004533 ORTHO05D005347 3.3e-36 156.4 256 43.8
CsaV3_6G033770 Cucumis sativus L. HOM05D004533 ORTHO05D005347 4.4e-36 156.0 328 37.2
MSTRG.13457 Avicennia marina HOM05D004533 ORTHO05D005347 4.1e-34 149.4 322 45.3
DCAR_023748 Daucus carota HOM05D004533 ORTHO05D005347 7.0e-34 148.7 318 41.8
Oeu020361.1 Olea europaea HOM05D004533 ORTHO05D005347 7.0e-34 148.7 268 46.3
Hma1.2p1_0428F.1_g151070 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 1.6e-33 147.5 268 43.7
Peaxi162Scf00175g00062 Petunia axillaris HOM05D004533 ORTHO05D005347 1.6e-33 147.5 321 39.3
ClCG05G023610 Citrullus lanatus HOM05D004533 ORTHO05D005347 4.5e-33 146.0 281 46.3
DCAR_030051 Daucus carota HOM05D004533 ORTHO05D005347 1.3e-32 144.4 309 39.8
Nitab4.5_0006154g0010 Nicotiana tabacum HOM05D004533 ORTHO05D005347 4.2e-31 139.4 299 48.2
DCAR_026684 Daucus carota HOM05D004533 ORTHO05D005347 9.4e-31 138.3 333 36.9
PSO478G4496 Papaver somniferum HOM05D004533 ORTHO05D005347 1.2e-30 137.9 324 36.4
CsaV3_5G033410 Cucumis sativus L. HOM05D004533 ORTHO05D005347 1.6e-30 137.5 272 38.6
vmacro01308 Vaccinium macrocarpon HOM05D004533 ORTHO05D005347 6.1e-30 135.6 299 43.5
Rhsim12G0073600 Rhododendron simsii HOM05D004533 ORTHO05D005347 1.8e-29 134.0 294 42.2
ECA233G1177 Erigeron canadensis HOM05D004533 ORTHO05D005347 2.3e-29 133.7 331 41.1
Sc11g0002570 Simmondsia chinensis HOM05D004533 ORTHO05D005347 2.3e-29 133.7 315 45.4
Carub.0002s1576 Capsella rubella HOM05D004533 ORTHO05D005347 5.2e-29 132.5 316 41.8
MELO3C012160.2 Cucumis melo HOM05D004533 ORTHO05D005347 8.8e-29 131.7 273 37.7
ATR0827G049 Amborella trichopoda HOM05D004533 ORTHO05D005347 1.2e-28 131.3 297 44.4
Actinidia16147 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.5e-28 131.0 221 55.7
Actinidia13399 Actinidia chinensis HOM05D004533 ORTHO05D005347 2.6e-28 130.2 191 60.7
Solyc05g012030.1 Solanum lycopersicum HOM05D004533 ORTHO05D005347 3.3e-28 129.8 309 44.3
Lsat_1_v5_gn_8_45920 Lactuca sativa HOM05D004533 ORTHO05D005347 7.5e-28 128.6 323 40.2
PSO017G3527 Papaver somniferum HOM05D004533 ORTHO05D005347 7.5e-28 128.6 325 34.8
Sp5g24200 Schrenkiella parvula HOM05D004533 ORTHO05D005347 1.8e-26 124.0 311 43.1
Sed0009680 Sechium edule HOM05D004533 ORTHO05D005347 1.8e-26 124.0 290 37.2
ECA234G4159 Erigeron canadensis HOM05D004533 ORTHO05D005347 3.1e-26 123.2 330 34.2
THA.LOC104821996 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 4.1e-26 122.9 294 40.8
BcaC08g46370 Brassica carinata HOM05D004533 ORTHO05D005347 7.0e-26 122.1 327 41.0
BolC6t39358H Brassica oleracea HOM05D004533 ORTHO05D005347 7.0e-26 122.1 327 41.0
Lsat_1_v5_gn_4_11700 Lactuca sativa HOM05D004533 ORTHO05D005347 9.1e-26 121.7 330 37.0
Ah.02g126770 Amaranthus hybridus HOM05D004533 ORTHO05D005347 1.2e-25 121.3 318 36.5
BcaB03g15876 Brassica carinata HOM05D004533 ORTHO05D005347 2.0e-25 120.6 327 41.0
BraA02t06624Z Brassica rapa HOM05D004533 ORTHO05D005347 2.7e-25 120.2 324 42.0
HanXRQChr12g0363201 Helianthus annuus HOM05D004533 ORTHO05D005347 3.5e-25 119.8 324 41.4
BraA07t31139Z Brassica rapa HOM05D004533 ORTHO05D005347 4.5e-25 119.4 329 40.1
C06p40740 Brassica napus HOM05D004533 ORTHO05D005347 5.9e-25 119.0 327 40.7
EL10Ac6g15027 Beta vulgaris HOM05D004533 ORTHO05D005347 1.7e-24 117.5 290 36.2
A07p35490 Brassica napus HOM05D004533 ORTHO05D005347 3.8e-24 116.3 329 40.4
MBI16_g39936_MAGBIO Magnolia biondii HOM05D004533 ORTHO05D005347 5.0e-24 115.9 281 39.9
MSTRG.7732 Avicennia marina HOM05D004533 ORTHO05D005347 1.5e-23 114.4 298 43.3
Nitab4.5_0000027g0050 Nicotiana tabacum HOM05D004533 ORTHO05D005347 2.5e-23 113.6 302 44.4
Sc04g0007440 Simmondsia chinensis HOM05D004533 ORTHO05D005347 3.2e-23 113.2 291 44.7
AL2G28250 Arabidopsis lyrata HOM05D004533 ORTHO05D005347 5.5e-23 112.5 321 41.7
AT1G69160 Arabidopsis thaliana HOM05D004533 ORTHO05D005347 5.5e-23 112.5 304 43.1
Thhalv10018878m.g Eutrema salsugineum HOM05D004533 ORTHO05D005347 5.5e-23 112.5 322 42.2
A02p15640 Brassica napus HOM05D004533 ORTHO05D005347 9.4e-23 111.7 321 40.8
SGA_v2.0_scaffold287G47174 Striga asiatica HOM05D004533 ORTHO05D005347 9.4e-23 111.7 312 37.2
Sopen05g006810 Solanum pennellii HOM05D004533 ORTHO05D005347 1.6e-22 110.9 220 50.0
Nn3g17512 Nelumbo nucifera HOM05D004533 ORTHO05D005347 3.6e-22 109.8 300 41.7
Ah.03g138730 Amaranthus hybridus HOM05D004533 ORTHO05D005347 4.7e-22 109.4 321 34.6
BolC2t08676H Brassica oleracea HOM05D004533 ORTHO05D005347 4.7e-22 109.4 321 40.5
BcaC03g15057 Brassica carinata HOM05D004533 ORTHO05D005347 8.0e-22 108.6 318 40.9
C02p26000 Brassica napus HOM05D004533 ORTHO05D005347 8.0e-22 108.6 321 39.6
PGR102G1315 Punica granatum HOM05D004533 ORTHO05D005347 8.0e-22 108.6 298 39.9
CANSAT64G2295 Cannabis sativa HOM05D004533 ORTHO05D005347 2.3e-21 107.1 398 37.9
Aa31LG4G11830 Aethionema arabicum HOM05D004533 ORTHO05D005347 1.2e-20 104.8 269 47.2
CARHR062030 Cardamine hirsuta HOM05D004533 ORTHO05D005347 4.4e-20 102.8 319 41.1
PGSC0003DMG400028307 Solanum tuberosum HOM05D004533 ORTHO05D005347 7.5e-20 102.1 315 35.6
DCAR_007202 Daucus carota HOM05D004533 ORTHO05D005347 4.5e-17 92.8 320 31.2
Lj6P776T6 Lonicera japonica HOM05D004533 ORTHO05D005347 1.7e-16 90.9 172 43.0
Migut.E00039 Erythranthe guttata HOM05D004533 ORTHO05D005347 5.0e-16 89.4 280 42.9
PGR119G0103 Punica granatum HOM05D004533 ORTHO05D005347 6.5e-16 89.0 326 39.0
PSO063G5982 Papaver somniferum HOM05D004533 ORTHO05D005347 1.8e-10 70.9 314 30.3
PSO782G4709 Papaver somniferum HOM05D004533 ORTHO05D005347 7.0e-10 68.9 316 31.6
BcaC08g45911 Brassica carinata HOM05D004533 ORTHO05D005347 9.2e-10 68.6 251 34.3
BcaC08g45912 Brassica carinata HOM05D004533 ORTHO05D005347 1.6e-09 67.8 253 34.0
CDE02G4104 Ceratophyllum demersum HOM05D004533 ORTHO05D005347 3.5e-09 66.6 292 27.1
Carub.0003s1356 Capsella rubella HOM05D001488 ORTHO05D001456 2.9e-08 63.5 211 28.9
GSVIVG01012248001 Vitis vinifera HOM05D004533 ORTHO05D005347 6.6e-08 62.4 35 80.0
unitig_22.g5564 Utricularia gibba HOM05D004533 ORTHO05D005347 1.5e-07 61.2 257 28.8
Ciclev10025682m.g Citrus clementina HOM05D001488 ORTHO05D001456 3.3e-07 60.1 205 32.2
Dinv25581 Davidia involucrata HOM05D001488 ORTHO05D001456 9.5e-07 58.5 192 31.2
PSO063G4179 Papaver somniferum HOM05D001488 ORTHO05D001456 9.5e-07 58.5 202 30.7
Lj9P522T34 Lonicera japonica HOM05D001488 ORTHO05D001456 1.2e-06 58.2 193 34.7
Peaxi162Scf00038g01811 Petunia axillaris HOM05D001488 ORTHO05D001456 2.1e-06 57.4 198 29.3
HanXRQChr10g0312441 Helianthus annuus HOM05D001488 ORTHO05D001456 3.6e-06 56.6 211 28.9
Duzib187G1785 Durio zibethinus HOM05D001488 ORTHO05D001456 4.7e-06 56.2 193 27.5
HPP92_007737 Vanilla planifolia HOM05D004533 ORTHO05D005347 4.7e-06 56.2 258 27.9
CiPaw.04G146700 Carya illinoinensis HOM05D001488 ORTHO05D001456 6.1e-06 55.8 187 30.5
TAR626G0456 Trochodendron aralioides HOM05D001488 ORTHO05D001456 6.1e-06 55.8 281 27.8
Medtr3g104880 Medicago truncatula HOM05D001488 ORTHO05D001456 8.0e-06 55.5 199 32.2
Nitab4.5_0002879g0080 Nicotiana tabacum HOM05D001488 ORTHO05D001456 8.0e-06 55.5 187 31.0


User provided reference genes

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