Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_19501_v3 Cicer arietinum L. HOM05D004560 ORTHO05D005540 0.0e+00 4287.3 2403 100.0
Psat4g089080 Pisum sativum HOM05D004560 ORTHO05D005540 0.0e+00 3462.2 2469 79.2
TPR.G10251 Trifolium pratense HOM05D004560 ORTHO05D005540 0.0e+00 3462.2 2460 82.7
Lj4g0000036 Lotus japonicus HOM05D004560 ORTHO05D005540 0.0e+00 3194.8 2458 76.7
Glyma.17G175000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 2947.9 2443 72.8
VMungo0251G0843 Vigna mungo HOM05D004560 ORTHO05D005540 0.0e+00 2893.6 2440 71.0
Phvul.003G244225 Phaseolus vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 2892.1 2438 70.8
arahy.Tifrunner.gnm1.ann1.TDMJ0N Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 2834.7 2485 68.8
Glyma.05G096000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 2817.3 2432 71.0
arahy.Tifrunner.gnm1.ann1.IC24VR Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 2802.3 2486 68.2
Lalb_Chr16g0378501 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 2273.0 2460 59.7
QL06p041719 Quercus lobata HOM05D004560 ORTHO05D005540 0.0e+00 2219.9 2548 57.1
Lalb_Chr09g0323121 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 2197.9 2473 56.4
Prupe.7G134200 Prunus persica HOM05D004560 ORTHO05D005540 0.0e+00 2158.6 2555 56.7
Cfa004012 Carpinus fangiana HOM05D004560 ORTHO05D005540 0.0e+00 2134.4 2531 55.2
Lalb_Chr09g0323141 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 2119.7 2481 56.8
MD02G1171200 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 2054.6 2562 53.7
Thecc.01G055000 Theobroma cacao HOM05D004560 ORTHO05D005540 0.0e+00 2051.9 2522 55.0
CANSAT01G1534 Cannabis sativa HOM05D004560 ORTHO05D005540 0.0e+00 2035.0 2514 54.3
MD15G1283100 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 2026.5 2568 53.5
Ciclev10024681m.g Citrus clementina HOM05D004560 ORTHO05D005540 0.0e+00 2020.4 2513 54.0
CiPaw.02G008700 Carya illinoinensis HOM05D004560 ORTHO05D005540 0.0e+00 2014.2 2545 53.5
Duzib147G0064 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1983.4 2530 54.0
FvH4_5g28170 Fragaria vesca HOM05D004560 ORTHO05D005540 0.0e+00 1958.3 2580 52.2
Duzib187G0053 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1955.3 2528 52.9
CSS0026663 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 1949.9 2539 52.6
FAN08G1993 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1948.3 2584 52.1
Manes.12G101400 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 1946.4 2531 52.2
RcHm_v2.0_Chr2g0105371 Rosa chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1942.5 2487 53.2
Manes.12G101200 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 1940.2 2531 52.4
Gorai.008G075400 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 1939.9 2519 52.2
FAN18G2522 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1934.1 2578 51.9
Potri.005G137700 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 1925.2 2524 53.5
FAN04G2449 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1924.1 2586 51.6
Gohir.D12G068900 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1911.3 2515 51.8
Gohir.A12G072000 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1910.6 2517 51.7
Potri.007G043300 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 1886.7 2528 52.5
Duzib264G0542 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1851.3 2525 51.6
Gorai.008G075200 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 1847.8 2516 51.4
Gohir.A12G070800 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1847.0 2520 51.2
Gohir.D12G068700 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1835.8 2517 51.3
Sabra05G0109900 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 1829.7 2515 50.8
TWI09G1111 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1806.2 2502 51.1
TAR376G0591 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1806.2 2566 50.3
Actinidia03789 Actinidia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1778.1 2530 50.4
Sabra07G0038200 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 1763.8 2530 50.6
ClCG01G016790 Citrullus lanatus HOM05D004560 ORTHO05D005540 0.0e+00 1758.8 2509 50.2
TWI53G0832 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1741.9 2506 50.3
TWI73G0239 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1728.0 2524 48.9
Nn1g04868 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1708.0 2566 48.6
COL.COLO4_11405 Corchorus olitorius HOM05D004560 ORTHO05D005540 0.0e+00 1686.4 2522 49.2
CsaV3_6G043220 Cucumis sativus L. HOM05D004560 ORTHO05D005540 0.0e+00 1666.7 2512 48.9
Eucgr.I00932 Eucalyptus grandis HOM05D004560 ORTHO05D005540 0.0e+00 1664.8 2514 48.6
Dinv39857 Davidia involucrata HOM05D004560 ORTHO05D005540 0.0e+00 1662.5 2034 54.7
CSS0033893 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 1656.7 2215 52.0
GSVIVG01022139001 Vitis vinifera HOM05D004560 ORTHO05D005540 0.0e+00 1642.1 2459 49.2
Lj7A70T81 Lonicera japonica HOM05D004560 ORTHO05D005540 0.0e+00 1636.3 2556 48.2
Nitab4.5_0002016g0010 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1629.4 2532 48.2
MBI02_g02993_MAGBIO Magnolia biondii HOM05D004560 ORTHO05D005540 0.0e+00 1627.8 2551 46.7
CAN.G836.79 Capsicum annuum HOM05D004560 ORTHO05D005540 0.0e+00 1625.1 2527 48.3
Nitab4.5_0001034g0140 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1612.8 2527 47.9
Nn5g30326 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1607.0 2331 50.3
Sopen02g035390 Solanum pennellii HOM05D004560 ORTHO05D005540 0.0e+00 1580.8 2518 47.7
Peaxi162Scf00450g00514 Petunia axillaris HOM05D004560 ORTHO05D005540 0.0e+00 1574.3 2664 45.2
Oeu039071.1 Olea europaea HOM05D004560 ORTHO05D005540 0.0e+00 1570.1 2539 45.7
vmacro17949 Vaccinium macrocarpon HOM05D004560 ORTHO05D005540 0.0e+00 1563.9 2499 48.0
Sed0025145 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1561.6 2487 48.0
TAR381G0340 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1561.6 2474 47.6
Rhsim08G0100900 Rhododendron simsii HOM05D004560 ORTHO05D005540 0.0e+00 1546.2 2520 47.6
Sed0014897 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1541.6 2486 47.5
Aqoxy5G01239 Aquilegia oxysepala HOM05D004560 ORTHO05D005540 0.0e+00 1540.4 2560 45.1
Sc03g0001520 Simmondsia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1526.5 2518 45.5
AUR62003874 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1508.8 2430 45.1
Hund13557 Selenicereus undatus HOM05D004560 ORTHO05D005540 0.0e+00 1505.3 2524 45.0
Solyc02g090760.4 Solanum lycopersicum HOM05D004560 ORTHO05D005540 0.0e+00 1503.8 2410 47.2
AUR62001937 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1456.0 2394 44.9
PGR031G0319 Punica granatum HOM05D004560 ORTHO05D005540 0.0e+00 1454.5 2481 45.2
ECA238G3505 Erigeron canadensis HOM05D004560 ORTHO05D005540 0.0e+00 1441.4 2498 45.4
Haze_15408 Corylus avellana HOM05D004560 ORTHO05D005540 0.0e+00 1415.2 1894 51.3
Cc07_g19160 Coffea canephora HOM05D004560 ORTHO05D005540 0.0e+00 1411.4 2496 44.9
DCAR_014074 Daucus carota HOM05D004560 ORTHO05D005540 0.0e+00 1376.7 2515 43.6
THA.LOC104819234 Tarenaya hassleriana HOM05D004560 ORTHO05D005540 0.0e+00 1355.1 2497 44.1
EL10Ac4g07947 Beta vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1338.9 2483 42.4
PSO384G0851 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1318.9 2619 40.9
PSO135G0768 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1269.6 2627 39.9
MSTRG.23750 Avicennia marina HOM05D004560 ORTHO05D005540 0.0e+00 1258.8 2522 42.5
PSO017G5866 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1212.6 2541 39.8
Lsat_1_v5_gn_2_84180 Lactuca sativa HOM05D004560 ORTHO05D005540 0.0e+00 1211.1 2523 42.2
HanXRQChr14g0448241 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1209.1 2482 41.7
Aa31LG4G18600 Aethionema arabicum HOM05D004560 ORTHO05D005540 0.0e+00 1198.7 2482 42.1
PSO170G6095 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1164.4 2551 39.5
Sp5g11810 Schrenkiella parvula HOM05D004560 ORTHO05D005540 0.0e+00 1157.1 2483 41.4
HanXRQChr14g0442851 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1148.7 2465 40.0
AT3G50370 Arabidopsis thaliana HOM05D004560 ORTHO05D005540 0.0e+00 1147.1 2422 41.7
AL5G30500 Arabidopsis lyrata HOM05D004560 ORTHO05D005540 0.0e+00 1145.6 2462 40.7
ATR0753G002 Amborella trichopoda HOM05D004560 ORTHO05D005540 0.0e+00 1102.8 2592 38.7
Carub.0005s1668 Capsella rubella HOM05D004560 ORTHO05D005540 0.0e+00 1094.7 2426 40.4
CARHR159850 Cardamine hirsuta HOM05D004560 ORTHO05D005540 3.1e-292 1010.0 2375 39.2
Thhalv10010051m.g Eutrema salsugineum HOM05D004560 ORTHO05D005540 4.4e-291 1006.1 2406 37.4
TAR628G0564 Trochodendron aralioides HOM05D004560 ORTHO05D005540 7.6e-291 1005.4 1300 51.3
Migut.N01430 Erythranthe guttata HOM05D004560 ORTHO05D005540 2.4e-281 973.8 2521 37.2
MELO3C007558.2 Cucumis melo HOM05D004560 ORTHO05D005540 2.2e-274 950.7 1694 45.3
Oeu003960.1 Olea europaea HOM05D004560 ORTHO05D005540 2.5e-265 920.6 1754 42.3
Cpa.g.sc55.157 Carica papaya HOM05D004560 ORTHO05D005540 1.5e-262 911.4 977 56.9
Zm00001eb019260 Zea mays HOM05D004560 ORTHO05D005540 1.1e-257 895.2 2489 37.2
BcaB01g00621 Brassica carinata HOM05D004560 ORTHO05D005540 2.8e-245 854.0 2399 36.9
Atru.chr10.1634 Acer truncatum HOM05D004560 ORTHO05D005540 3.7e-237 827.0 1061 55.4
BcaC07g39495 Brassica carinata HOM05D004560 ORTHO05D005540 3.1e-220 770.8 2405 35.6
C08p25410 Brassica napus HOM05D004560 ORTHO05D005540 3.1e-220 770.8 2405 35.6
A09p43370 Brassica napus HOM05D004560 ORTHO05D005540 5.4e-220 770.0 2392 35.6
BraA09t39806Z Brassica rapa HOM05D004560 ORTHO05D005540 5.9e-219 766.5 2398 35.5
BolC8t50162H Brassica oleracea HOM05D004560 ORTHO05D005540 9.5e-217 759.2 2450 35.2
Actinidia16495 Actinidia chinensis HOM05D004560 ORTHO05D005540 9.5e-209 732.6 729 61.2
SEGI_38337 Sequoiadendron giganteum HOM05D004560 ORTHO05D005540 1.2e-208 732.3 2730 33.8
Cpa.g.sc55.158 Carica papaya HOM05D004560 ORTHO05D005540 1.9e-201 708.4 938 55.2
CDE04G1181 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 7.6e-174 616.7 1914 35.4
Haze_15410 Corylus avellana HOM05D004560 ORTHO05D005540 6.6e-170 603.6 579 63.4
CDE08G0981 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 5.8e-166 590.5 1807 32.2
HPP92_004113 Vanilla planifolia HOM05D004560 ORTHO05D005540 2.2e-165 588.6 2528 30.7
TAR628G1123 Trochodendron aralioides HOM05D004560 ORTHO05D005540 1.9e-156 558.9 980 45.0
Actinidia16497 Actinidia chinensis HOM05D004560 ORTHO05D005540 1.8e-151 542.3 948 47.4
PGSC0003DMG400004537 Solanum tuberosum HOM05D004560 ORTHO05D005540 4.4e-129 468.0 460 57.8
Os03g0395600 Oryza sativa ssp. japonica HOM05D004560 ORTHO05D005540 1.3e-128 466.5 780 43.6
Psat2g096520 Pisum sativum HOM05D004560 ORTHO05D005540 1.2e-126 459.9 297 79.8
FAN04G2556 Fragaria x ananassa HOM05D004560 ORTHO05D005540 4.5e-118 431.4 694 45.8
unitig_736.g22380 Utricularia gibba HOM05D004560 ORTHO05D005540 3.2e-116 425.2 948 38.0
SHI34246 Sapria himalayana HOM05D004560 ORTHO05D005540 7.0e-111 407.5 1793 31.6
unitig_736.g22379 Utricularia gibba HOM05D004560 ORTHO05D005540 7.7e-102 377.5 1336 34.2
Mapoly0121s0051 Marchantia polymorpha HOM05D004560 ORTHO05D005540 1.5e-97 363.2 2770 29.0
HPP92_004075 Vanilla planifolia HOM05D004560 ORTHO05D005540 2.0e-94 352.8 1211 32.2
unitig_899.g14936 Utricularia gibba HOM05D004560 ORTHO05D005540 4.7e-83 315.1 977 32.3
Dinv39858 Davidia involucrata HOM05D004560 ORTHO05D005540 7.8e-78 297.7 517 43.3
Pp3c7_3230 Physcomitrium patens HOM05D004560 ORTHO05D005540 7.8e-70 271.2 2713 27.3
Psat3g009840 Pisum sativum HOM05D004560 ORTHO05D005540 1.3e-61 243.8 236 64.8
Pp3c11_18520 Physcomitrium patens HOM05D004560 ORTHO05D005540 2.3e-61 243.0 2655 28.1
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 1.3e-59 237.3 230 63.5
SHI34241 Sapria himalayana HOM05D000030 ORTHO05D000009 6.4e-56 224.9 579 33.9
Pp3c11_18522 Physcomitrium patens HOM05D004560 ORTHO05D005540 1.1e-55 224.2 2646 27.9
Sed0026550 Sechium edule HOM05D004560 ORTHO05D005540 6.6e-53 214.9 497 38.2
HPP92_004077 Vanilla planifolia HOM05D004560 ORTHO05D005540 3.8e-48 199.1 1016 31.6
Psat2g096560 Pisum sativum HOM05D001260 ORTHO05D004134 3.0e-45 189.5 123 82.1
Cpa.g.sc55.156 Carica papaya HOM05D004560 ORTHO05D005540 1.2e-38 167.5 231 49.4
unitig_899.g14938 Utricularia gibba HOM05D004560 ORTHO05D005540 1.1e-36 161.0 319 39.8
SMO340G0113 Selaginella moellendorffii HOM05D004560 ORTHO05D005540 8.2e-35 154.8 2390 26.0
RcHm_v2.0_Chr2g0145051 Rosa chinensis HOM05D004560 ORTHO05D005540 3.0e-29 136.3 203 49.3
RcHm_v2.0_Chr4g0416641 Rosa chinensis HOM05D004560 ORTHO05D005540 3.0e-29 136.3 203 49.3
Psat1g018440 Pisum sativum HOM05D004560 ORTHO05D005540 2.5e-28 133.3 78 85.9
Psat5g208000 Pisum sativum HOM05D004560 ORTHO05D005540 4.8e-27 129.0 75 86.7
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 5.3e-26 125.6 546 28.2
Rhsim08G0115000 Rhododendron simsii HOM05D000030 ORTHO05D000009 9.0e-26 124.8 335 34.3
Psat2g096600 Pisum sativum HOM05D004560 ORTHO05D005540 7.2e-23 115.2 91 73.6
AagrBONN_evm.TU.Sc2ySwM_228.1624 Anthoceros agrestis HOM05D004560 ORTHO05D005540 9.4e-23 114.8 2170 26.5
unitig_899.g14935 Utricularia gibba HOM05D004560 ORTHO05D005540 6.1e-22 112.1 453 28.5
unitig_899.g14937 Utricularia gibba HOM05D004560 ORTHO05D005540 9.1e-18 98.2 297 31.0
CDE04G1185 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 6.1e-14 85.5 177 38.4
EL10Ac9g22827 Beta vulgaris HOM05D004560 ORTHO05D005540 1.3e-11 77.8 156 38.5
SHI34242 Sapria himalayana HOM05D004560 ORTHO05D005540 9.1e-10 71.6 84 50.0
Actinidia16496 Actinidia chinensis HOM05D004560 ORTHO05D005540 4.5e-09 69.3 205 32.7
RcHm_v2.0_Chr2g0105361 Rosa chinensis HOM05D004560 ORTHO05D037471 1.6e-06 60.8 72 58.3
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 3.6e-06 59.7 133 35.3
CBR_g34112 Chara braunii HOM05D000019 ORTHO05D137378 6.1e-06 58.9 259 30.1


User provided reference genes

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