Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_19442_v3 Cicer arietinum L. HOM05D004765 ORTHO05D005900 0.0e+00 1112.8 565 100.0
TPR.G17196 Trifolium pratense HOM05D004765 ORTHO05D005900 2.7e-311 1071.2 565 95.6
Medtr4g052530 Medicago truncatula HOM05D004765 ORTHO05D005900 2.7e-303 1044.6 585 90.8
Glyma.11G181400 Glycine max HOM05D004765 ORTHO05D005900 9.8e-298 1026.2 563 92.0
Glyma.12G091700 Glycine max HOM05D004765 ORTHO05D005900 7.0e-296 1020.0 563 91.5
Phvul.011G096100 Phaseolus vulgaris HOM05D004765 ORTHO05D005900 2.2e-294 1015.0 565 90.6
Lj3g0002417 Lotus japonicus HOM05D004765 ORTHO05D005900 1.9e-293 1011.9 565 90.4
Lalb_Chr03g0028231 Lupinus albus HOM05D004765 ORTHO05D005900 7.3e-285 983.4 566 86.9
Lalb_Chr01g0004931 Lupinus albus HOM05D004765 ORTHO05D005900 1.2e-284 982.6 566 87.1
arahy.Tifrunner.gnm1.ann1.HXUJ4C Arachis hypogaea HOM05D004765 ORTHO05D005900 3.6e-284 981.1 565 87.1
arahy.Tifrunner.gnm1.ann1.E8Y1JT Arachis hypogaea HOM05D004765 ORTHO05D005900 2.3e-283 978.4 565 86.9
Psat7g187280 Pisum sativum HOM05D004765 ORTHO05D005900 2.3e-283 978.4 520 94.2
CiPaw.14G098100 Carya illinoinensis HOM05D004765 ORTHO05D005900 4.4e-266 921.0 565 81.1
Cfa009988 Carpinus fangiana HOM05D004765 ORTHO05D005900 7.5e-266 920.2 565 81.8
Prupe.6G135800 Prunus persica HOM05D004765 ORTHO05D005900 3.7e-265 917.9 549 82.3
Thecc.09G278900 Theobroma cacao HOM05D004765 ORTHO05D005900 1.3e-262 909.4 567 81.3
Ciclev10028115m.g Citrus clementina HOM05D004765 ORTHO05D005900 5.1e-262 907.5 565 80.0
QL01p011857 Quercus lobata HOM05D004765 ORTHO05D005900 1.5e-261 906.0 564 80.3
MD03G1149800 Malus domestica HOM05D004765 ORTHO05D005900 9.5e-261 903.3 549 81.2
RcHm_v2.0_Chr5g0045881 Rosa chinensis HOM05D004765 ORTHO05D005900 4.7e-260 901.0 549 80.9
Haze_23347 Corylus avellana HOM05D004765 ORTHO05D005900 1.8e-259 899.0 633 73.8
Gorai.009G084100 Gossypium raimondii HOM05D004765 ORTHO05D005900 8.9e-259 896.7 549 81.6
GSVIVG01036081001 Vitis vinifera HOM05D004765 ORTHO05D005900 1.2e-258 896.3 565 78.8
Manes.11G164300 Manihot esculenta HOM05D004765 ORTHO05D005900 1.5e-258 896.0 565 78.2
Cpa.g.sc195.23 Carica papaya HOM05D004765 ORTHO05D005900 2.0e-258 895.6 554 79.2
Dinv22819 Davidia involucrata HOM05D004765 ORTHO05D005900 5.8e-258 894.0 564 77.8
COL.COLO4_34006 Corchorus olitorius HOM05D004765 ORTHO05D005900 7.6e-258 893.6 567 79.7
Gohir.D05G082500 Gossypium hirsutum HOM05D004765 ORTHO05D005900 9.9e-258 893.3 549 81.2
Potri.009G160400 Populus trichocarpa HOM05D004765 ORTHO05D005900 9.9e-258 893.3 566 78.4
Dinv08934 Davidia involucrata HOM05D004765 ORTHO05D005900 2.2e-257 892.1 564 77.8
Gorai.006G113500 Gossypium raimondii HOM05D004765 ORTHO05D005900 2.9e-257 891.7 567 79.2
Gohir.A05G079600 Gossypium hirsutum HOM05D004765 ORTHO05D005900 4.9e-257 891.0 549 81.2
Gohir.A09G097000 Gossypium hirsutum HOM05D004765 ORTHO05D005900 8.4e-257 890.2 567 79.0
MD11G1168600 Malus domestica HOM05D004765 ORTHO05D005900 1.9e-256 889.0 549 79.8
Actinidia07259 Actinidia chinensis HOM05D004765 ORTHO05D005900 3.2e-256 888.3 563 79.0
Gohir.D09G096800 Gossypium hirsutum HOM05D004765 ORTHO05D005900 3.2e-256 888.3 567 79.0
PGR119G0504 Punica granatum HOM05D004765 ORTHO05D005900 5.4e-256 887.5 565 79.1
CANSAT54G2137 Cannabis sativa HOM05D004765 ORTHO05D005900 9.2e-256 886.7 566 78.4
Sabra09G0125600 Salix brachista HOM05D004765 ORTHO05D005900 9.2e-256 886.7 569 78.2
TWI31G1403 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 4.6e-255 884.4 549 79.8
Actinidia24229 Actinidia chinensis HOM05D004765 ORTHO05D005900 6.0e-255 884.0 563 77.8
TWI79G1303 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 3.9e-254 881.3 549 79.4
Potri.004G198200 Populus trichocarpa HOM05D004765 ORTHO05D005900 9.6e-253 876.7 566 77.2
CSS0013873 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.2e-252 876.3 562 78.1
CSS0028820 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 2.1e-252 875.5 562 78.1
FAN11G2377 Fragaria x ananassa HOM05D004765 ORTHO05D005900 8.9e-251 870.2 549 78.0
CSS0015967 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 3.4e-250 868.2 565 77.7
Sabra04G0134200 Salix brachista HOM05D004765 ORTHO05D005900 7.6e-250 867.1 563 76.6
CSS0022046 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.3e-249 866.3 565 77.5
FAN16G1441 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.3e-249 866.3 549 77.6
Sed0019641 Sechium edule HOM05D004765 ORTHO05D005900 3.2e-248 861.7 565 75.9
FAN21G2648 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.6e-247 859.4 564 75.9
ClCG01G011820 Citrullus lanatus HOM05D004765 ORTHO05D005900 3.9e-246 854.7 571 75.3
FAN25G0471 Fragaria x ananassa HOM05D004765 ORTHO05D005900 5.1e-246 854.4 572 74.8
Atru.chr3.3169 Acer truncatum HOM05D004765 ORTHO05D005900 7.3e-245 850.5 547 78.4
vmacro14340 Vaccinium macrocarpon HOM05D004765 ORTHO05D005900 7.3e-245 850.5 547 76.6
CsaV3_1G015080 Cucumis sativus L. HOM05D004765 ORTHO05D005900 2.4e-243 845.5 567 75.0
MELO3C025589.2 Cucumis melo HOM05D004765 ORTHO05D005900 5.3e-243 844.3 565 75.0
DCAR_006171 Daucus carota HOM05D004765 ORTHO05D005900 3.4e-242 841.6 549 76.3
Rhsim01G0203800 Rhododendron simsii HOM05D004765 ORTHO05D005900 7.6e-242 840.5 600 71.7
Eucgr.J00522 Eucalyptus grandis HOM05D004765 ORTHO05D005900 1.7e-241 839.3 528 78.0
Sc12g0004610 Simmondsia chinensis HOM05D004765 ORTHO05D005900 2.2e-241 839.0 549 75.8
Carub.0005s1005 Capsella rubella HOM05D004765 ORTHO05D005900 4.9e-241 837.8 563 74.6
AT3G44330 Arabidopsis thaliana HOM05D004765 ORTHO05D005900 6.4e-241 837.4 560 74.8
AL5G22480 Arabidopsis lyrata HOM05D004765 ORTHO05D005900 1.1e-240 836.6 560 75.2
CARHR104550 Cardamine hirsuta HOM05D004765 ORTHO05D005900 3.2e-240 835.1 561 74.5
Thhalv10010249m.g Eutrema salsugineum HOM05D004765 ORTHO05D005900 4.2e-240 834.7 562 74.2
HanXRQChr11g0343661 Helianthus annuus HOM05D004765 ORTHO05D005900 5.4e-240 834.3 551 74.8
Lsat_1_v5_gn_1_77581 Lactuca sativa HOM05D004765 ORTHO05D005900 5.4e-240 834.3 568 73.6
ECA248G3663 Erigeron canadensis HOM05D004765 ORTHO05D005900 7.1e-240 833.9 561 74.0
Migut.N02474 Erythranthe guttata HOM05D004765 ORTHO05D005900 9.3e-240 833.6 556 75.0
Duzib170G0619 Durio zibethinus HOM05D004765 ORTHO05D005900 6.0e-239 830.9 567 73.9
Sp5g16890 Schrenkiella parvula HOM05D004765 ORTHO05D005900 7.9e-239 830.5 562 73.8
Cc01_g08830 Coffea canephora HOM05D004765 ORTHO05D005900 1.0e-238 830.1 562 72.8
THA.LOC104814781 Tarenaya hassleriana HOM05D004765 ORTHO05D005900 1.0e-238 830.1 563 74.1
MSTRG.18770 Avicennia marina HOM05D004765 ORTHO05D005900 5.1e-238 827.8 565 72.6
BraA06t25294Z Brassica rapa HOM05D004765 ORTHO05D005900 1.9e-237 825.9 563 73.4
BcaB01g01169 Brassica carinata HOM05D004765 ORTHO05D005900 7.4e-237 823.9 560 72.1
PSO801G0028 Papaver somniferum HOM05D004765 ORTHO05D005900 7.4e-237 823.9 549 75.8
C03p69330 Brassica napus HOM05D004765 ORTHO05D005900 2.1e-236 822.4 563 72.8
BolC3t19191H Brassica oleracea HOM05D004765 ORTHO05D005900 2.1e-236 822.4 563 72.8
HanXRQChr01g0024031 Helianthus annuus HOM05D004765 ORTHO05D005900 3.6e-236 821.6 551 74.6
A06p22050 Brassica napus HOM05D004765 ORTHO05D005900 4.8e-236 821.2 560 73.0
PSO339G1244 Papaver somniferum HOM05D004765 ORTHO05D005900 8.1e-236 820.5 549 75.2
BcaC01g02031 Brassica carinata HOM05D004765 ORTHO05D005900 1.4e-235 819.7 563 72.5
A06p26850 Brassica napus HOM05D004765 ORTHO05D005900 1.2e-234 816.6 559 73.0
Peaxi162Scf00345g01023 Petunia axillaris HOM05D004765 ORTHO05D005900 7.6e-234 813.9 554 74.0
Hund20934 Selenicereus undatus HOM05D004765 ORTHO05D005900 7.6e-234 813.9 549 72.9
BcaC01g02231 Brassica carinata HOM05D004765 ORTHO05D005900 9.9e-234 813.5 559 72.5
ATR0081G060 Amborella trichopoda HOM05D004765 ORTHO05D005900 2.2e-233 812.4 565 70.8
Sopen11g027390 Solanum pennellii HOM05D004765 ORTHO05D005900 8.4e-233 810.4 568 72.2
Solyc11g068670.2 Solanum lycopersicum HOM05D004765 ORTHO05D005900 1.1e-232 810.1 568 72.2
Nn6g34806 Nelumbo nucifera HOM05D004765 ORTHO05D005900 4.2e-232 808.1 565 72.9
BcaB02g10755 Brassica carinata HOM05D004765 ORTHO05D005900 2.1e-231 805.8 561 72.5
Peaxi162Scf00224g00217 Petunia axillaris HOM05D004765 ORTHO05D005900 2.1e-231 805.8 565 72.4
Nitab4.5_0003068g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 7.9e-231 803.9 555 73.3
Nitab4.5_0000227g0370 Nicotiana tabacum HOM05D004765 ORTHO05D005900 5.1e-230 801.2 568 71.8
Solyc01g009380.3 Solanum lycopersicum HOM05D004765 ORTHO05D005900 5.1e-230 801.2 563 71.4
Nitab4.5_0008177g0070 Nicotiana tabacum HOM05D004765 ORTHO05D005900 2.5e-229 798.9 604 69.2
Aqoxy2G01052 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 3.3e-229 798.5 565 71.9
Aa31LG4G13830 Aethionema arabicum HOM05D004765 ORTHO05D005900 3.7e-228 795.0 539 73.8
CDE08G1681 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 1.1e-227 793.5 545 71.9
Nitab4.5_0000731g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.8e-227 792.7 538 74.0
Oeu051604.1 Olea europaea HOM05D004765 ORTHO05D005900 1.8e-227 792.7 571 70.8
SGA_v2.0_scaffold177G39433 Striga asiatica HOM05D004765 ORTHO05D005900 2.4e-227 792.3 560 71.4
Aqoxy4G02718 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 2.0e-226 789.3 605 67.1
CAN.G745.10 Capsicum annuum HOM05D004765 ORTHO05D005900 1.7e-225 786.2 566 69.4
Duzib168G0312 Durio zibethinus HOM05D004765 ORTHO05D005900 6.0e-223 777.7 549 73.4
SalBow6G2851 Salvia bowleyana HOM05D004765 ORTHO05D005900 1.3e-222 776.5 599 67.1
EL10Ac7g16329 Beta vulgaris HOM05D004765 ORTHO05D005900 1.1e-221 773.5 641 63.2
AUR62020257 Chenopodium quinoa HOM05D004765 ORTHO05D005900 4.3e-221 771.5 531 71.9
Os08g0102100 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D005900 2.4e-219 765.8 549 67.6
SGA_v2.0_scaffold295G47508 Striga asiatica HOM05D004765 ORTHO05D005900 5.3e-219 764.6 555 68.1
HPP92_006357 Vanilla planifolia HOM05D004765 ORTHO05D005900 5.1e-214 748.0 563 65.2
Zm00001eb259900 Zea mays HOM05D004765 ORTHO05D005900 6.3e-212 741.1 550 65.6
Lj1A257T30 Lonicera japonica HOM05D004765 ORTHO05D005900 3.8e-209 731.9 454 79.3
FvH4_3g25670 Fragaria vesca HOM05D004765 ORTHO05D005900 5.5e-208 728.0 464 75.6
unitig_0.g1473 Utricularia gibba HOM05D004765 ORTHO05D005900 3.3e-205 718.8 572 64.3
CDE02G4012 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 6.5e-201 704.5 549 65.9
Migut.D02363 Erythranthe guttata HOM05D004765 ORTHO05D005900 6.1e-199 698.0 475 71.2
Sc12g0004660 Simmondsia chinensis HOM05D004765 ORTHO05D005900 3.1e-195 685.6 477 71.5
Zm00001eb198750 Zea mays HOM05D004765 ORTHO05D005900 2.0e-194 682.9 498 65.3
Mapoly0185s0020 Marchantia polymorpha HOM05D004765 ORTHO05D005900 3.2e-192 675.6 546 61.0
Pp3c12_11630 Physcomitrium patens HOM05D004765 ORTHO05D005900 5.9e-186 654.8 557 59.2
SMO141G0161 Selaginella moellendorffii HOM05D004765 ORTHO05D005900 1.5e-176 623.6 554 57.0
AUR62001526 Chenopodium quinoa HOM05D004765 ORTHO05D005900 1.0e-166 590.9 411 70.3
C03p67600 Brassica napus HOM05D004765 ORTHO05D005900 1.3e-161 573.9 401 70.1
BraA06t25618Z Brassica rapa HOM05D004765 ORTHO05D005900 2.3e-161 573.2 401 70.3
BolSC21t60262H Brassica oleracea HOM05D004765 ORTHO05D005900 1.5e-160 570.5 401 69.8
Oeu014468.1 Olea europaea HOM05D004765 ORTHO05D005900 9.8e-157 557.8 359 78.8
TAR633G2468 Trochodendron aralioides HOM05D004765 ORTHO05D005900 1.9e-155 553.5 367 73.6
CBR_g17963 Chara braunii HOM05D004765 ORTHO05D005900 1.5e-144 517.3 549 49.7
VMungo1127G1239 Vigna mungo HOM05D004765 ORTHO05D005900 3.2e-139 499.6 272 92.3
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05D004765 ORTHO05D005900 3.4e-133 479.6 533 46.5
Sopen01g004890 Solanum pennellii HOM05D004765 ORTHO05D005900 4.0e-126 456.1 329 68.1
CAN.G226.4 Capsicum annuum HOM05D004765 ORTHO05D005900 3.7e-111 406.4 274 73.0
SEGI_38882 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 5.5e-99 365.9 220 79.5
Psat4g157520 Pisum sativum HOM05D004765 ORTHO05D005900 9.1e-86 322.0 222 76.6
CAN.G30.1 Capsicum annuum HOM05D004765 ORTHO05D005900 3.9e-81 306.6 194 72.2
Migut.D02428 Erythranthe guttata HOM05D004765 ORTHO05D005900 1.8e-78 297.7 200 77.0
SEGI_20304 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 7.8e-53 212.6 141 75.9
CAN.G198.33 Capsicum annuum HOM05D004765 ORTHO05D005900 1.9e-51 208.0 152 64.5
CAN.G1211.3 Capsicum annuum HOM05D004765 ORTHO05D005900 9.8e-48 195.7 147 65.3
CAN.G79.6 Capsicum annuum HOM05D004765 ORTHO05D005900 9.5e-43 179.1 189 52.4
CAN.G79.7 Capsicum annuum HOM05D004765 ORTHO05D005900 3.6e-42 177.2 117 70.1
TAR633G0557 Trochodendron aralioides HOM05D004765 ORTHO05D005900 6.4e-31 139.8 85 88.2
VMungo0251G2550 Vigna mungo HOM05D000107 ORTHO05D000001 2.8e-26 124.4 106 61.3
Lj1C257T9 Lonicera japonica HOM05D004765 ORTHO05D030006 3.6e-26 124.0 115 57.4
QL04p027443 Quercus lobata HOM05D004765 ORTHO05D030006 1.3e-23 115.5 77 75.3
SEGI_24377 Sequoiadendron giganteum HOM05D004765 ORTHO05D030006 9.2e-22 109.4 99 53.5
Sc12g0004650 Simmondsia chinensis HOM05D004765 ORTHO05D030006 3.5e-21 107.5 73 72.6
SEGI_19690 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 1.0e-20 105.9 87 62.1
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 3.6e-10 70.9 239 27.2
Os12g0509400 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D296799 5.3e-09 67.0 55 58.2
Os02g0736500 Oryza sativa ssp. japonica HOM05D002544 ORTHO05D007856 1.3e-07 62.4 306 25.8
VMungo0464G0759 Vigna mungo HOM05D004765 ORTHO05D005900 3.8e-07 60.8 53 56.6
Pp3c10_16910 Physcomitrium patens HOM05D004765 ORTHO05D315325 1.1e-06 59.3 110 36.4


User provided reference genes

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