Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_19420_v3 Cicer arietinum L. HOM05D007670 ORTHO05D009646 0.0e+00 1120.5 592 100.0
Medtr4g104750 Medicago truncatula HOM05D007670 ORTHO05D009646 1.4e-262 909.4 609 83.9
Psat4g061560 Pisum sativum HOM05D007670 ORTHO05D009646 1.7e-260 902.5 609 83.4
TPR.G37476 Trifolium pratense HOM05D007670 ORTHO05D009646 8.5e-252 873.6 648 77.2
Glyma.05G042100 Glycine max HOM05D007670 ORTHO05D009646 3.1e-222 775.4 614 72.3
Lj4g0014046 Lotus japonicus HOM05D007670 ORTHO05D009646 3.7e-215 751.9 610 70.5
VMungo1215G0346 Vigna mungo HOM05D007670 ORTHO05D009646 6.2e-202 708.0 612 67.6
Phvul.003G205800 Phaseolus vulgaris HOM05D007670 ORTHO05D009646 4.3e-195 685.3 611 68.4
arahy.Tifrunner.gnm1.ann1.4HF9FM Arachis hypogaea HOM05D007670 ORTHO05D009646 6.8e-193 677.9 626 64.1
arahy.Tifrunner.gnm1.ann1.2S9CTF Arachis hypogaea HOM05D007670 ORTHO05D009646 1.7e-191 673.3 626 63.7
Thecc.03G116000 Theobroma cacao HOM05D007670 ORTHO05D009646 1.4e-153 547.4 630 55.2
TWI39G0169 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 3.8e-143 512.7 637 51.0
Cc04_g11380 Coffea canephora HOM05D007670 ORTHO05D009646 1.2e-141 507.7 632 50.5
FAN18G1020 Fragaria x ananassa HOM05D007670 ORTHO05D009646 4.6e-141 505.8 635 52.1
Gohir.A03G074800 Gossypium hirsutum HOM05D007670 ORTHO05D009646 6.1e-141 505.4 633 50.6
COL.COLO4_33501 Corchorus olitorius HOM05D007670 ORTHO05D009646 5.1e-140 502.3 646 51.1
PGR044G2723 Punica granatum HOM05D007670 ORTHO05D009646 2.2e-138 496.9 646 49.8
FAN04G2873 Fragaria x ananassa HOM05D007670 ORTHO05D009646 1.5e-136 490.7 638 51.1
Potri.015G084300 Populus trichocarpa HOM05D007670 ORTHO05D009646 3.4e-136 489.6 588 53.1
FvH4_5g06391 Fragaria vesca HOM05D007670 ORTHO05D009646 4.5e-136 489.2 633 52.0
TWI23G1319 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 4.5e-136 489.2 641 50.5
FAN13G0035 Fragaria x ananassa HOM05D007670 ORTHO05D009646 8.5e-135 485.0 634 51.9
FAN08G1903 Fragaria x ananassa HOM05D007670 ORTHO05D009646 1.1e-134 484.6 634 52.5
Ciclev10024352m.g Citrus clementina HOM05D007670 ORTHO05D009646 1.2e-133 481.1 640 48.6
Atru.chr9.2593 Acer truncatum HOM05D007670 ORTHO05D009646 1.6e-133 480.7 621 51.5
Cfa019228 Carpinus fangiana HOM05D007670 ORTHO05D009646 4.7e-133 479.2 627 51.7
Glyma.17G124800 Glycine max HOM05D007670 ORTHO05D009646 8.2e-130 468.4 401 71.1
Prupe.5G164600 Prunus persica HOM05D007670 ORTHO05D009646 8.2e-130 468.4 604 50.5
PGSC0003DMG400018192 Solanum tuberosum HOM05D007670 ORTHO05D009646 8.5e-127 458.4 631 49.3
Manes.06G111300 Manihot esculenta HOM05D007670 ORTHO05D009646 1.1e-126 458.0 519 55.3
Nitab4.5_0008913g0020 Nicotiana tabacum HOM05D007670 ORTHO05D009646 1.5e-126 457.6 640 48.3
Sopen03g031210 Solanum pennellii HOM05D007670 ORTHO05D009646 1.5e-126 457.6 631 49.6
RcHm_v2.0_Chr7g0192411 Rosa chinensis HOM05D007670 ORTHO05D009646 1.6e-125 454.1 552 52.9
MD14G1170500 Malus domestica HOM05D007670 ORTHO05D009646 2.1e-125 453.8 576 52.3
Nitab4.5_0002522g0060 Nicotiana tabacum HOM05D007670 ORTHO05D009646 2.3e-124 450.3 634 48.6
CANSAT80G0945 Cannabis sativa HOM05D007670 ORTHO05D009646 3.9e-124 449.5 638 47.0
Gorai.003G106900 Gossypium raimondii HOM05D007670 ORTHO05D009646 5.7e-123 445.7 546 50.2
Actinidia08035 Actinidia chinensis HOM05D007670 ORTHO05D009646 3.7e-122 443.0 627 48.2
Aqoxy3G01244 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 4.8e-122 442.6 635 45.5
SalBow5G0325 Salvia bowleyana HOM05D007670 ORTHO05D009646 2.4e-121 440.3 668 45.8
Gohir.D03G101500 Gossypium hirsutum HOM05D007670 ORTHO05D009646 1.2e-120 438.0 546 49.8
SalBow5G5044 Salvia bowleyana HOM05D007670 ORTHO05D009646 1.6e-120 437.6 663 46.2
DCAR_007451 Daucus carota HOM05D007670 ORTHO05D009646 2.7e-117 426.8 616 45.6
PSO478G3950 Papaver somniferum HOM05D007670 ORTHO05D009646 4.7e-117 426.0 629 45.3
ECA246G3610 Erigeron canadensis HOM05D007670 ORTHO05D009646 1.8e-116 424.1 673 42.8
ClCG03G003050 Citrullus lanatus HOM05D007670 ORTHO05D009646 4.4e-115 419.5 595 45.7
Migut.O00167 Erythranthe guttata HOM05D007670 ORTHO05D009646 1.2e-112 411.4 631 45.5
Sed0003800 Sechium edule HOM05D007670 ORTHO05D009646 2.0e-112 410.6 597 44.4
Lsat_1_v5_gn_5_13921 Lactuca sativa HOM05D007670 ORTHO05D009646 1.7e-111 407.5 595 44.5
ATR0824G010 Amborella trichopoda HOM05D007670 ORTHO05D009646 7.5e-107 392.1 611 44.2
Lj5C130G15 Lonicera japonica HOM05D007670 ORTHO05D009646 1.2e-99 368.2 588 42.2
CiPaw.12G031800 Carya illinoinensis HOM05D007670 ORTHO05D009646 2.9e-98 363.6 563 45.1
GSVIVG01007632001 Vitis vinifera HOM05D007670 ORTHO05D009646 8.6e-95 352.1 447 49.9
Hma1.2p1_1092F.1_g255930 Hydrangea macrophylla HOM05D007670 ORTHO05D009646 3.1e-92 343.6 449 47.2
Eucgr.K02784 Eucalyptus grandis HOM05D007670 ORTHO05D009646 5.2e-92 342.8 428 49.5
TAR629G1516 Trochodendron aralioides HOM05D007670 ORTHO05D009646 1.9e-86 324.3 300 61.3
HanXRQChr05g0156201 Helianthus annuus HOM05D007670 ORTHO05D009646 7.3e-86 322.4 504 41.5
Dinv20593 Davidia involucrata HOM05D007670 ORTHO05D009646 6.2e-85 319.3 422 49.3
Glyma.17G124700 Glycine max HOM05D007670 ORTHO05D009646 1.4e-76 291.6 219 73.5
QL10p006759 Quercus lobata HOM05D007670 ORTHO05D009646 7.6e-75 285.8 450 45.6
HPP92_003438 Vanilla planifolia HOM05D001493 ORTHO05D001681 2.8e-69 267.3 517 40.2
HPP92_001311 Vanilla planifolia HOM05D007670 ORTHO05D009646 5.8e-67 259.6 609 36.6
MELO3C002304.2 Cucumis melo HOM05D007670 ORTHO05D009646 1.9e-65 254.6 310 48.1
Peaxi162Scf00089g01230 Petunia axillaris HOM05D007670 ORTHO05D009646 3.5e-64 250.4 274 54.0
Zm00001eb388830 Zea mays HOM05D007670 ORTHO05D009646 6.0e-64 249.6 612 35.1
Solyc03g112120.3 Solanum lycopersicum HOM05D007670 ORTHO05D009646 6.6e-63 246.1 277 54.2
Cpa.g.sc159.12 Carica papaya HOM05D007670 ORTHO05D009646 2.4e-57 227.6 615 33.5
Peaxi162Scf00089g01229 Petunia axillaris HOM05D007670 ORTHO05D009646 1.7e-55 221.5 355 46.8
Solyc03g112110.1 Solanum lycopersicum HOM05D007670 ORTHO05D009646 2.9e-50 204.1 347 44.7
Actinidia24601 Actinidia chinensis HOM05D007670 ORTHO05D009646 3.3e-46 190.7 230 48.7
TAR629G0999 Trochodendron aralioides HOM05D007670 ORTHO05D009646 5.5e-41 173.3 215 52.1
SEGI_28887 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 1.0e-39 169.1 273 39.6
Zm00001eb143920 Zea mays HOM05D007670 ORTHO05D009646 8.2e-37 159.5 389 34.2
Os01g0909300 Oryza sativa ssp. japonica HOM05D007670 ORTHO05D009646 6.7e-31 139.8 161 44.7
Sabra15G0107400 Salix brachista HOM05D007670 ORTHO05D009646 1.8e-28 131.7 436 32.6
Zm00001eb393770 Zea mays HOM05D007670 ORTHO05D009646 3.1e-28 131.0 235 37.9
Pp3c11_2120 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.3e-26 125.6 285 32.6
QL10p006748 Quercus lobata HOM05D007670 ORTHO05D009646 2.8e-21 107.8 113 62.8
Mapoly0020s0028 Marchantia polymorpha HOM05D007670 ORTHO05D009646 3.7e-21 107.5 193 38.3
Pp3c18_13530 Physcomitrium patens HOM05D007670 ORTHO05D009646 3.7e-21 107.5 267 30.7
Pp3c26_6480 Physcomitrium patens HOM05D007670 ORTHO05D009646 9.1e-20 102.8 278 27.7
Pp3c26_6484 Physcomitrium patens HOM05D007670 ORTHO05D009646 9.1e-20 102.8 278 27.7
Pp3c10_12340 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.0e-18 99.4 286 28.3
Pp3c21_7410 Physcomitrium patens HOM05D007670 ORTHO05D009646 3.8e-18 97.4 274 28.8
SEGI_38678 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 4.2e-17 94.0 410 30.2
SMO118G0556 Selaginella moellendorffii HOM05D007837 ORTHO05D009965 5.1e-15 87.0 216 31.5
CsaV3_1G008900 Cucumis sativus L. HOM05D007670 ORTHO05D009646 5.7e-14 83.6 90 53.3
Pp3c7_23860 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.4e-12 79.0 290 26.6
AagrBONN_evm.TU.Sc2ySwM_228.3840 Anthoceros agrestis HOM05D007837 ORTHO05D009965 2.2e-10 71.6 263 25.9
MELO3C007007.2 Cucumis melo HOM05D007837 ORTHO05D009965 2.2e-10 71.6 235 25.5
PSO675G4978 Papaver somniferum HOM05D007837 ORTHO05D009965 2.2e-10 71.6 219 26.0
Gohir.D05G113500 Gossypium hirsutum HOM05D007837 ORTHO05D009965 2.9e-10 71.2 219 28.3
PSO541G2349 Papaver somniferum HOM05D007837 ORTHO05D009965 2.9e-10 71.2 237 25.3
ClCG01G025810 Citrullus lanatus HOM05D007837 ORTHO05D009965 3.8e-10 70.9 249 24.1
Gorai.009G117500 Gossypium raimondii HOM05D007837 ORTHO05D009965 3.8e-10 70.9 219 28.3
Peaxi162Scf00195g00413 Petunia axillaris HOM05D007837 ORTHO05D009965 3.8e-10 70.9 235 27.2
Oeu008970.1 Olea europaea HOM05D007837 ORTHO05D009965 6.5e-10 70.1 232 24.6
SEGI_16109 Sequoiadendron giganteum HOM05D007837 ORTHO05D009965 6.5e-10 70.1 180 28.9
CsaV3_6G053020 Cucumis sativus L. HOM05D007837 ORTHO05D009965 8.5e-10 69.7 236 25.0
Gohir.A05G113000 Gossypium hirsutum HOM05D007837 ORTHO05D009965 8.5e-10 69.7 219 27.4
Psat7g145400 Pisum sativum HOM05D007837 ORTHO05D009965 1.1e-09 69.3 263 25.1
Nitab4.5_0001219g0090 Nicotiana tabacum HOM05D007837 ORTHO05D009965 3.2e-09 67.8 234 26.9
Sopen02g018680 Solanum pennellii HOM05D007837 ORTHO05D009965 5.5e-09 67.0 221 26.2
VMungo1127G0844 Vigna mungo HOM05D007837 ORTHO05D009965 5.5e-09 67.0 140 32.9
Ciclev10017939m.g Citrus clementina HOM05D007837 ORTHO05D009965 1.6e-08 65.5 261 24.1
SalBow8G2294 Salvia bowleyana HOM05D007837 ORTHO05D009965 1.6e-08 65.5 230 24.3
SalBow8G2521 Salvia bowleyana HOM05D007837 ORTHO05D009965 1.6e-08 65.5 230 24.3
GSVIVG01037969001 Vitis vinifera HOM05D007837 ORTHO05D009965 2.1e-08 65.1 117 30.8
arahy.Tifrunner.gnm1.ann1.FUT705 Arachis hypogaea HOM05D007837 ORTHO05D009965 2.7e-08 64.7 140 25.0
TWI15G0587 Tripterygium wilfordii HOM05D007837 ORTHO05D009965 2.7e-08 64.7 160 28.1
DCAR_001340 Daucus carota HOM05D007837 ORTHO05D009965 3.6e-08 64.3 161 27.3
Dinv06743 Davidia involucrata HOM05D007837 ORTHO05D009965 3.6e-08 64.3 215 24.2
Lsat_1_v5_gn_1_90680 Lactuca sativa HOM05D007837 ORTHO05D001664 3.6e-08 64.3 189 24.3
MD10G1240200 Malus domestica HOM05D007837 ORTHO05D009965 3.6e-08 64.3 215 24.2
Aqoxy3G00774 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 6.1e-08 63.5 144 33.3
Cpa.g.sc192.12 Carica papaya HOM05D007837 ORTHO05D009965 6.1e-08 63.5 167 29.3
Actinidia33640 Actinidia chinensis HOM05D007837 ORTHO05D009965 8.0e-08 63.2 219 25.1
Duzib160G0902 Durio zibethinus HOM05D007837 ORTHO05D009965 8.0e-08 63.2 220 25.5
Migut.M01930 Erythranthe guttata HOM05D007837 ORTHO05D009965 8.0e-08 63.2 308 23.7
ATR1098G128 Amborella trichopoda HOM05D007837 ORTHO05D009965 1.4e-07 62.4 197 24.4
Lj3g0012849 Lotus japonicus HOM05D007837 ORTHO05D009965 1.4e-07 62.4 342 21.1
CSS0012057 Camellia sinensis var. sinensis HOM05D007837 ORTHO05D009965 1.8e-07 62.0 165 26.7
CANSAT35G1648 Cannabis sativa HOM05D007837 ORTHO05D009965 2.3e-07 61.6 261 23.8
PGR042G0413 Punica granatum HOM05D007837 ORTHO05D009965 2.3e-07 61.6 264 24.2
Solyc02g069550.1 Solanum lycopersicum HOM05D007837 ORTHO05D009965 3.0e-07 61.2 312 24.0
Glyma.12G002600 Glycine max HOM05D007837 ORTHO05D009965 4.0e-07 60.8 283 21.9
Lj1A1155T50 Lonicera japonica HOM05D007837 ORTHO05D009965 5.2e-07 60.5 143 28.0
Phvul.011G003300 Phaseolus vulgaris HOM05D007837 ORTHO05D009965 1.1e-06 59.3 277 22.4
Sed0012016 Sechium edule HOM05D007837 ORTHO05D009965 1.1e-06 59.3 236 22.9
Atru.chr10.652 Acer truncatum HOM05D007837 ORTHO05D009965 1.5e-06 58.9 238 23.9
Aqoxy3G03542 Aquilegia oxysepala HOM05D007837 ORTHO05D009965 2.6e-06 58.2 336 22.3
Prupe.4G103700 Prunus persica HOM05D007837 ORTHO05D009965 2.6e-06 58.2 195 23.6
Manes.16G061400 Manihot esculenta HOM05D007837 ORTHO05D009965 3.3e-06 57.8 285 23.2
Dinv15942 Davidia involucrata HOM05D007837 ORTHO05D009965 4.4e-06 57.4 197 23.9
FAN16G2143 Fragaria x ananassa HOM05D007837 ORTHO05D009965 5.7e-06 57.0 252 21.8
FAN25G3065 Fragaria x ananassa HOM05D007837 ORTHO05D009965 7.5e-06 56.6 277 22.4
RcHm_v2.0_Chr5g0018641 Rosa chinensis HOM05D007837 ORTHO05D009965 7.5e-06 56.6 146 24.7
TAR626G0822 Trochodendron aralioides HOM05D007837 ORTHO05D009965 9.7e-06 56.2 143 25.9


User provided reference genes

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