Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_19413_v3 Cicer arietinum L. HOM05D004934 ORTHO05D005924 2.1e-56 222.2 119 100.0
Medtr4g052910 Medicago truncatula HOM05D004934 ORTHO05D005924 1.0e-47 193.4 121 86.0
Glyma.12G090500 Glycine max HOM05D004934 ORTHO05D005924 2.5e-46 188.7 117 86.3
Lalb_Chr03g0028151 Lupinus albus HOM05D004934 ORTHO05D005924 4.8e-45 184.5 121 83.5
TPR.G17236 Trifolium pratense HOM05D004934 ORTHO05D005924 1.8e-44 182.6 121 81.0
arahy.Tifrunner.gnm1.ann1.Q13MWU Arachis hypogaea HOM05D004934 ORTHO05D005924 2.4e-44 182.2 119 82.4
arahy.Tifrunner.gnm1.ann1.Q2H7V9 Arachis hypogaea HOM05D004934 ORTHO05D005924 2.4e-44 182.2 119 82.4
VMungo1127G1656 Vigna mungo HOM05D004934 ORTHO05D005924 3.1e-44 181.8 117 82.1
Glyma.11G182300 Glycine max HOM05D004934 ORTHO05D005924 6.9e-44 180.6 117 82.9
Phvul.011G095100 Phaseolus vulgaris HOM05D004934 ORTHO05D005924 6.9e-44 180.6 117 83.8
Lalb_Chr01g0004881 Lupinus albus HOM05D004934 ORTHO05D005924 3.2e-41 171.8 119 79.8
Psat7g187720 Pisum sativum HOM05D004934 ORTHO05D005924 3.5e-40 168.3 119 77.3
Lj3g0027260 Lotus japonicus HOM05D004934 ORTHO05D005924 5.1e-39 164.5 119 74.8
PGR102G3359 Punica granatum HOM05D004934 ORTHO05D005924 4.5e-35 151.4 121 69.4
Cfa010007 Carpinus fangiana HOM05D004934 ORTHO05D005924 5.8e-35 151.0 120 71.7
Thecc.09G281300 Theobroma cacao HOM05D004934 ORTHO05D005924 9.3e-33 143.7 120 70.0
CiPaw.14G099500 Carya illinoinensis HOM05D004934 ORTHO05D005924 2.1e-32 142.5 119 68.9
GSVIVG01036114001 Vitis vinifera HOM05D004934 ORTHO05D005924 6.0e-32 141.0 119 68.1
FvH4_5g26820 Fragaria vesca HOM05D004934 ORTHO05D005924 1.3e-31 139.8 120 66.7
FAN04G2654 Fragaria x ananassa HOM05D004934 ORTHO05D005924 1.3e-31 139.8 120 66.7
Manes.04G003100 Manihot esculenta HOM05D004934 ORTHO05D005924 1.3e-31 139.8 123 67.5
TWI31G0143 Tripterygium wilfordii HOM05D004934 ORTHO05D005924 2.3e-31 139.0 122 65.6
Aqoxy4G02760 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 5.1e-31 137.9 121 68.6
FAN13G2036 Fragaria x ananassa HOM05D004934 ORTHO05D005924 5.1e-31 137.9 120 65.8
RcHm_v2.0_Chr5g0045641 Rosa chinensis HOM05D004934 ORTHO05D005924 6.7e-31 137.5 119 67.2
QL01p012137 Quercus lobata HOM05D004934 ORTHO05D005924 1.1e-30 136.7 120 65.8
Prupe.6G131900 Prunus persica HOM05D004934 ORTHO05D005924 1.5e-30 136.3 119 65.5
Hund18761 Selenicereus undatus HOM05D004934 ORTHO05D005924 1.5e-30 136.3 121 67.8
TAR633G0561 Trochodendron aralioides HOM05D004934 ORTHO05D005924 1.9e-30 136.0 121 66.9
Nn2g14177 Nelumbo nucifera HOM05D004934 ORTHO05D005924 2.5e-30 135.6 120 65.8
Gohir.D08G015900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 5.7e-30 134.4 121 67.8
Gorai.004G010200 Gossypium raimondii HOM05D004934 ORTHO05D005924 9.6e-30 133.7 121 66.9
Dinv42546 Davidia involucrata HOM05D004934 ORTHO05D005924 1.3e-29 133.3 120 69.2
Duzib168G1921 Durio zibethinus HOM05D004934 ORTHO05D005924 1.3e-29 133.3 120 66.7
Eucgr.B03844 Eucalyptus grandis HOM05D004934 ORTHO05D005924 2.1e-29 132.5 119 65.5
Hma1.2p1_0587F.1_g184270 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 3.7e-29 131.7 121 67.8
Gohir.A08G005600 Gossypium hirsutum HOM05D004934 ORTHO05D005924 8.2e-29 130.6 121 65.3
Sed0020870 Sechium edule HOM05D004934 ORTHO05D005924 4.1e-28 128.3 120 66.7
THA.LOC104800543 Tarenaya hassleriana HOM05D004934 ORTHO05D005924 6.9e-28 127.5 121 66.1
Sabra09G0127300 Salix brachista HOM05D004934 ORTHO05D005924 9.0e-28 127.1 121 66.1
Dinv22836 Davidia involucrata HOM05D004934 ORTHO05D005924 1.2e-27 126.7 120 63.3
Potri.009G163100 Populus trichocarpa HOM05D004934 ORTHO05D005924 1.2e-27 126.7 126 64.3
ClCG01G011970 Citrullus lanatus HOM05D004934 ORTHO05D005924 2.0e-27 125.9 114 66.7
MD11G1166100 Malus domestica HOM05D004934 ORTHO05D005924 2.0e-27 125.9 115 64.3
RcHm_v2.0_Chr5g0046361 Rosa chinensis HOM05D004934 ORTHO05D005924 2.0e-27 125.9 127 62.2
Sabra04G0136300 Salix brachista HOM05D004934 ORTHO05D005924 3.4e-27 125.2 126 61.9
Actinidia35468 Actinidia chinensis HOM05D004934 ORTHO05D005924 5.8e-27 124.4 114 65.8
Ciclev10029605m.g Citrus clementina HOM05D004934 ORTHO05D005924 7.6e-27 124.0 118 61.0
Migut.N02487 Erythranthe guttata HOM05D004934 ORTHO05D005924 7.6e-27 124.0 120 64.2
ATR0609G030 Amborella trichopoda HOM05D004934 ORTHO05D005924 1.0e-26 123.6 121 62.0
MSTRG.17705 Avicennia marina HOM05D004934 ORTHO05D005924 1.0e-26 123.6 123 61.0
CsaV3_1G014900 Cucumis sativus L. HOM05D004934 ORTHO05D005924 1.0e-26 123.6 121 66.1
Nitab4.5_0002914g0100 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.0e-26 123.6 122 66.4
Cc01_g09040 Coffea canephora HOM05D004934 ORTHO05D005924 1.3e-26 123.2 122 63.1
Oeu031471.1 Olea europaea HOM05D004934 ORTHO05D005924 1.7e-26 122.9 123 62.6
Gohir.A09G096200 Gossypium hirsutum HOM05D004934 ORTHO05D005924 2.9e-26 122.1 116 61.2
Sc06g0008770 Simmondsia chinensis HOM05D004934 ORTHO05D005924 5.0e-26 121.3 121 62.0
Gohir.D09G095900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 6.5e-26 120.9 116 60.3
AUR62036196 Chenopodium quinoa HOM05D004934 ORTHO05D005924 8.4e-26 120.6 122 64.8
vmacro14353 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 8.4e-26 120.6 121 62.0
Nitab4.5_0000227g0280 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.1e-25 120.2 120 65.8
EL10Ac7g15830 Beta vulgaris HOM05D004934 ORTHO05D005924 2.5e-25 119.0 122 62.3
MSTRG.12371 Avicennia marina HOM05D004934 ORTHO05D005924 5.5e-25 117.9 123 58.5
CSS0038235 Camellia sinensis var. sinensis HOM05D004934 ORTHO05D005924 5.5e-25 117.9 106 68.9
CANSAT54G1198 Cannabis sativa HOM05D004934 ORTHO05D005924 5.5e-25 117.9 129 58.9
AUR62009749 Chenopodium quinoa HOM05D004934 ORTHO05D005924 5.5e-25 117.9 122 63.1
Nitab4.5_0012586g0010 Nicotiana tabacum HOM05D004934 ORTHO05D005924 5.5e-25 117.9 123 62.6
Potri.004G201700 Populus trichocarpa HOM05D004934 ORTHO05D005924 9.3e-25 117.1 124 62.1
unitig_27.g25034 Utricularia gibba HOM05D004934 ORTHO05D005924 9.3e-25 117.1 118 62.7
Duzib170G0221 Durio zibethinus HOM05D004934 ORTHO05D005924 1.2e-24 116.7 120 61.7
Solyc11g068510.2 Solanum lycopersicum HOM05D004934 ORTHO05D005924 1.2e-24 116.7 120 60.8
Sopen11g027220 Solanum pennellii HOM05D004934 ORTHO05D005924 1.2e-24 116.7 120 60.8
PGSC0003DMG400026356 Solanum tuberosum HOM05D004934 ORTHO05D005924 1.2e-24 116.7 120 60.8
Atru.chr3.3218 Acer truncatum HOM05D004934 ORTHO05D005924 2.1e-24 115.9 119 58.8
CARHR120400 Cardamine hirsuta HOM05D004934 ORTHO05D005924 3.5e-24 115.2 118 57.6
Nitab4.5_0000755g0070 Nicotiana tabacum HOM05D004934 ORTHO05D005924 3.5e-24 115.2 123 61.8
MD03G1147400 Malus domestica HOM05D004934 ORTHO05D005924 4.6e-24 114.8 115 60.9
TAR636G0935 Trochodendron aralioides HOM05D004934 ORTHO05D005924 6.1e-24 114.4 116 61.2
Peaxi162Scf00040g00023 Petunia axillaris HOM05D004934 ORTHO05D005924 7.9e-24 114.0 121 60.3
BcaB06g28164 Brassica carinata HOM05D004934 ORTHO05D005924 6.7e-23 110.9 124 56.5
AT2G27730 Arabidopsis thaliana HOM05D004934 ORTHO05D005924 8.7e-23 110.5 120 60.0
Carub.0004s0847 Capsella rubella HOM05D004934 ORTHO05D005924 8.7e-23 110.5 118 61.0
BcaC02g08235 Brassica carinata HOM05D004934 ORTHO05D005924 1.1e-22 110.2 119 56.3
C04p56900 Brassica napus HOM05D004934 ORTHO05D005924 1.1e-22 110.2 119 56.3
BolC4t27225H Brassica oleracea HOM05D004934 ORTHO05D005924 1.1e-22 110.2 119 56.3
Lsat_1_v5_gn_6_38900 Lactuca sativa HOM05D004934 ORTHO05D005924 1.5e-22 109.8 121 61.2
Zm00001eb369670 Zea mays HOM05D004934 ORTHO05D005924 1.5e-22 109.8 123 58.5
CAN.G1524.5 Capsicum annuum HOM05D004934 ORTHO05D005924 1.9e-22 109.4 120 55.8
BcaC02g10898 Brassica carinata HOM05D004934 ORTHO05D005924 4.3e-22 108.2 119 57.1
C04p23930 Brassica napus HOM05D004934 ORTHO05D005924 4.3e-22 108.2 119 57.1
BolC4t23886H Brassica oleracea HOM05D004934 ORTHO05D005924 4.3e-22 108.2 119 57.1
ECA233G4139 Erigeron canadensis HOM05D004934 ORTHO05D005924 4.3e-22 108.2 121 59.5
Zm00001eb151060 Zea mays HOM05D004934 ORTHO05D005924 5.7e-22 107.8 123 56.9
AL4G22570 Arabidopsis lyrata HOM05D004934 ORTHO05D005924 7.4e-22 107.5 120 57.5
A07p18350 Brassica napus HOM05D004934 ORTHO05D005924 7.4e-22 107.5 122 56.6
Sp4g10520 Schrenkiella parvula HOM05D004934 ORTHO05D005924 1.3e-21 106.7 123 57.7
BcaB02g10110 Brassica carinata HOM05D004934 ORTHO05D005924 1.6e-21 106.3 119 53.8
Aa31LG5G8260 Aethionema arabicum HOM05D004934 ORTHO05D005924 2.2e-21 105.9 118 55.9
Thhalv10017451m.g Eutrema salsugineum HOM05D004934 ORTHO05D005924 3.7e-21 105.1 118 60.2
A04p21090 Brassica napus HOM05D004934 ORTHO05D005924 4.8e-21 104.8 117 56.4
BraA04t17678Z Brassica rapa HOM05D004934 ORTHO05D005924 4.8e-21 104.8 117 56.4
BraA07t29551Z Brassica rapa HOM05D004934 ORTHO05D005924 1.4e-20 103.2 119 54.6
PSO339G6001 Papaver somniferum HOM05D004934 ORTHO05D005924 1.2e-19 100.1 117 53.8
PSO801G0293 Papaver somniferum HOM05D004934 ORTHO05D005924 1.5e-19 99.8 117 53.8
Aqoxy2G01124 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 2.0e-19 99.4 111 59.5
FAN11G2484 Fragaria x ananassa HOM05D004934 ORTHO05D005924 2.6e-19 99.0 120 51.7
FvH4_3g25100 Fragaria vesca HOM05D004934 ORTHO05D005924 4.5e-19 98.2 120 51.7
HanXRQChr13g0397481 Helianthus annuus HOM05D004934 ORTHO05D005924 7.7e-19 97.4 119 58.0
FAN25G2937 Fragaria x ananassa HOM05D004934 ORTHO05D005924 1.1e-17 93.6 83 63.9
Peaxi162Scf00757g00422 Petunia axillaris HOM05D004934 ORTHO05D005924 1.1e-17 93.6 115 54.8
Lsat_1_v5_gn_2_59421 Lactuca sativa HOM05D004934 ORTHO05D005924 2.5e-17 92.4 119 51.3
Rhsim13G0112500 Rhododendron simsii HOM05D004934 ORTHO05D005924 5.5e-17 91.3 157 45.9
PSO339G2388 Papaver somniferum HOM05D004934 ORTHO05D005924 7.2e-17 90.9 117 54.7
SGA_v2.0_scaffold295G47520 Striga asiatica HOM05D004934 ORTHO05D005924 9.4e-17 90.5 123 52.0
DCAR_010342 Daucus carota HOM05D004934 ORTHO05D005924 1.2e-16 90.1 89 57.3
BcaC02g10901 Brassica carinata HOM05D004934 ORTHO05D005924 4.6e-16 88.2 107 51.4
Oeu035567.1 Olea europaea HOM05D004934 ORTHO05D005924 4.6e-16 88.2 120 50.0
PSO384G4162 Papaver somniferum HOM05D004934 ORTHO05D005924 1.4e-15 86.7 111 49.5
SalBow3G2207 Salvia bowleyana HOM05D004934 ORTHO05D005924 1.4e-15 86.7 123 49.6
HanXRQChr11g0324151 Helianthus annuus HOM05D004934 ORTHO05D005924 1.8e-15 86.3 131 48.1
CDE04G1608 Ceratophyllum demersum HOM05D004934 ORTHO05D005924 6.7e-15 84.3 126 45.2
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 6.7e-15 84.3 116 47.4
SGA_v2.0_scaffold177G39414 Striga asiatica HOM05D004934 ORTHO05D005924 8.8e-15 84.0 123 50.4
Os08g0559000 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 2.5e-14 82.4 117 52.1
Gorai.009G084700 Gossypium raimondii HOM05D004934 ORTHO05D005924 5.7e-14 81.3 79 60.8
MBI05_g05303_MAGBIO Magnolia biondii HOM05D004934 ORTHO05D005924 1.7e-13 79.7 120 47.5
Gohir.D05G082900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 2.2e-13 79.3 79 59.5
DCAR_030570 Daucus carota HOM05D004934 ORTHO05D005924 6.3e-13 77.8 70 68.6
Zm00001eb416000 Zea mays HOM05D004934 ORTHO05D005924 6.3e-13 77.8 91 57.1
Gohir.A05G080000 Gossypium hirsutum HOM05D004934 ORTHO05D005924 8.2e-13 77.4 79 59.5
Zm00001eb343400 Zea mays HOM05D004934 ORTHO05D005924 1.4e-12 76.6 91 54.9
Pp3c1_22500 Physcomitrium patens HOM05D004934 ORTHO05D005924 2.4e-12 75.9 113 47.8
Cpa.g.sc32.36 Carica papaya HOM05D004934 ORTHO05D005924 5.3e-12 74.7 74 59.5
MELO3C004698.2 Cucumis melo HOM05D004934 ORTHO05D005924 9.1e-12 73.9 101 49.5
Hma1.2p1_0587F.1_g184260 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 1.5e-11 73.2 72 59.7
Hma1.2p1_3516F.1_g336514 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 1.5e-11 73.2 72 59.7
HPP92_003219 Vanilla planifolia HOM05D004934 ORTHO05D005924 2.6e-11 72.4 79 55.7
Os09g0568900 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 7.7e-11 70.9 78 50.0
ECA238G4733 Erigeron canadensis HOM05D004934 ORTHO05D005924 1.0e-10 70.5 122 45.9
Hma1.2p1_0413F.1_g147325 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 5.5e-09 64.7 73 53.4
Nn6g34871 Nelumbo nucifera HOM05D004934 ORTHO05D005924 9.4e-09 63.9 59 69.5
FAN21G3762 Fragaria x ananassa HOM05D004934 ORTHO05D005924 1.8e-07 59.7 80 55.0
vmacro03322 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 4.4e-06 55.1 190 32.6
Aqoxy7G00781 Aquilegia oxysepala HOM05D007506 ORTHO05D008409 5.7e-06 54.7 38 73.7


User provided reference genes

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