Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 1.6e-234 815.8 444 100.0
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 3.3e-176 622.1 374 89.0
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 4.2e-171 605.1 344 89.5
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 1.5e-160 570.1 367 72.2
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 4.4e-160 568.5 378 73.3
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 9.7e-160 567.4 360 74.7
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 2.2e-159 566.2 367 71.9
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 6.3e-159 564.7 367 71.7
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 8.3e-159 564.3 373 72.9
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 1.8e-158 563.1 374 71.1
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 3.5e-157 558.9 372 73.9
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 7.7e-157 557.8 371 72.8
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 1.3e-156 557.0 369 69.6
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 1.1e-155 553.9 304 83.9
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 1.1e-155 553.9 374 70.9
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 1.9e-155 553.1 371 72.8
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 1.2e-154 550.4 344 82.3
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 4.7e-154 548.5 302 83.8
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 1.0e-153 547.4 389 68.1
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 1.4e-153 547.0 378 68.8
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 1.5e-152 543.5 368 70.9
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 1.7e-151 540.0 391 68.8
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 1.7e-151 540.0 361 70.9
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 8.3e-151 537.7 373 69.4
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 1.1e-150 537.3 374 70.6
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 1.4e-150 537.0 373 70.5
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 1.4e-150 537.0 302 82.1
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 3.1e-150 535.8 379 69.9
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 4.1e-150 535.4 302 80.1
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 7.0e-150 534.6 373 69.2
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 1.2e-149 533.9 368 69.0
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 2.0e-149 533.1 301 80.1
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 2.7e-149 532.7 302 79.8
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 2.7e-149 532.7 374 68.4
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 2.7e-149 532.7 371 68.7
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 5.9e-149 531.6 377 67.6
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 5.9e-149 531.6 377 67.6
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 7.7e-149 531.2 371 69.8
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 1.0e-148 530.8 377 67.6
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 2.3e-148 529.6 377 67.1
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 2.3e-148 529.6 301 80.1
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 2.9e-148 529.3 370 70.8
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 2.9e-148 529.3 299 79.9
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 2.9e-148 529.3 363 69.4
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 3.8e-148 528.9 368 69.0
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 5.0e-148 528.5 359 72.1
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 1.1e-147 527.3 363 68.9
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.1e-147 527.3 363 68.9
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 2.5e-147 526.2 389 65.6
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 5.5e-147 525.0 362 69.9
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 9.5e-147 524.2 372 67.7
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 9.5e-147 524.2 377 72.1
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 1.2e-146 523.9 403 63.8
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 2.8e-146 522.7 368 67.9
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 2.8e-146 522.7 301 80.1
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 3.6e-146 522.3 301 80.1
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 4.7e-146 521.9 299 78.9
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 1.0e-145 520.8 387 66.1
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 1.8e-145 520.0 371 66.8
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 3.0e-145 519.2 375 66.7
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 3.0e-145 519.2 363 68.6
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 4.0e-145 518.8 370 66.8
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 4.0e-145 518.8 370 66.8
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 5.2e-145 518.5 364 68.1
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 8.9e-145 517.7 373 67.0
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 8.9e-145 517.7 356 69.4
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 8.9e-145 517.7 384 64.8
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 1.2e-144 517.3 368 67.1
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 1.5e-144 516.9 302 79.8
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.6e-144 516.2 302 77.8
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 4.4e-144 515.4 373 66.8
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 3.7e-143 512.3 302 78.1
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 6.3e-143 511.5 302 78.5
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 1.1e-142 510.8 374 66.0
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 1.2e-141 507.3 362 67.4
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 1.6e-141 506.9 379 66.0
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 1.6e-141 506.9 302 78.5
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.7e-140 503.4 361 67.9
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 2.3e-140 503.1 356 68.5
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 2.9e-140 502.7 361 67.0
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 5.0e-140 501.9 303 76.2
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 5.0e-140 501.9 361 66.5
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 8.6e-140 501.1 375 65.9
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 8.6e-140 501.1 302 76.8
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 1.1e-139 500.7 361 66.5
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 1.1e-139 500.7 361 65.7
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 2.5e-139 499.6 388 62.9
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 5.6e-139 498.4 371 64.7
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 7.3e-139 498.0 368 66.0
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 7.3e-139 498.0 361 65.9
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 1.6e-138 496.9 302 77.2
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 4.7e-138 495.4 361 65.7
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 6.1e-138 495.0 381 64.6
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 1.4e-137 493.8 302 75.8
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 1.8e-137 493.4 389 63.0
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 4.0e-137 492.3 306 72.9
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 1.5e-136 490.3 370 65.1
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 1.7e-135 486.9 368 64.1
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 2.9e-135 486.1 359 63.2
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 3.7e-135 485.7 373 63.5
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 1.1e-134 484.2 373 62.7
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 4.1e-134 482.3 301 72.8
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 2.7e-133 479.6 302 71.9
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 3.5e-133 479.2 362 64.4
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 3.5e-133 479.2 302 73.8
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 6.0e-133 478.4 360 66.4
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 1.0e-132 477.6 387 61.8
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 8.6e-132 474.6 337 67.1
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 3.3e-131 472.6 317 69.7
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 7.3e-131 471.5 360 62.2
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 3.1e-129 466.1 372 60.8
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 4.0e-129 465.7 385 62.6
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 2.6e-128 463.0 302 71.2
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 9.8e-128 461.1 301 69.8
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 1.9e-126 456.8 305 70.2
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 8.6e-124 448.0 301 68.4
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 1.5e-123 447.2 302 74.5
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 9.5e-123 444.5 301 67.8
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 4.0e-121 439.1 386 58.5
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 2.6e-120 436.4 302 66.9
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 4.4e-120 435.6 308 67.5
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 9.9e-120 434.5 309 67.6
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 3.7e-119 432.6 365 59.5
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 6.4e-119 431.8 291 69.8
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 2.7e-117 426.4 299 66.2
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.5e-115 419.9 248 77.4
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 9.6e-115 417.9 309 62.5
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 2.1e-114 416.8 231 80.5
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 3.4e-112 409.5 376 57.4
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 9.3e-110 401.4 302 63.6
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 6.0e-109 398.7 304 61.8
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 2.4e-105 386.7 203 89.2
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.4e-97 360.9 197 83.2
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 1.1e-91 341.3 197 78.7
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 2.2e-87 327.0 218 72.5
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 1.9e-86 323.9 216 68.1
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 3.5e-85 319.7 176 85.2
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 3.9e-84 316.2 251 65.7
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 1.7e-79 300.8 390 41.3
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.3e-76 291.2 229 62.4
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 1.1e-73 281.6 233 60.1
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 1.5e-72 277.7 342 41.8
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 1.7e-71 274.2 302 44.0
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 1.4e-70 271.2 221 59.7
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 8.5e-63 245.4 167 64.7
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 4.2e-62 243.0 295 42.0
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 1.1e-51 208.4 333 37.8
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 3.1e-49 200.3 199 50.3
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 5.5e-46 189.5 126 73.0
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 4.0e-36 156.8 107 67.3
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.7e-34 150.2 148 54.7
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 8.3e-26 122.5 80 67.5
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 2.1e-21 107.8 63 77.8
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 9.8e-19 99.0 57 73.7


User provided reference genes

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