Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_19383_v3 Cicer arietinum L. HOM05D004642 ORTHO05D005466 2.5e-242 842.4 718 100.0
Psat7g189080 Pisum sativum HOM05D004642 ORTHO05D005466 3.1e-139 500.0 717 70.0
Medtr4g054960 Medicago truncatula HOM05D004642 ORTHO05D005466 2.5e-117 427.2 762 59.8
Lj3g0008789 Lotus japonicus HOM05D004642 ORTHO05D005466 1.4e-107 394.8 740 58.2
Phvul.011G092000 Phaseolus vulgaris HOM05D004642 ORTHO05D005466 2.7e-103 380.6 746 62.1
Lalb_Chr14g0373421 Lupinus albus HOM05D004642 ORTHO05D005466 1.4e-102 378.3 690 51.6
Glyma.12G087100 Glycine max HOM05D004642 ORTHO05D005466 8.8e-102 375.6 745 52.1
VMungo1127G1134 Vigna mungo HOM05D004642 ORTHO05D005466 2.0e-93 347.8 744 56.6
TPR.G15588 Trifolium pratense HOM05D004642 ORTHO05D005466 1.8e-91 341.3 644 60.7
QL05p024308 Quercus lobata HOM05D004642 ORTHO05D005466 1.2e-87 328.6 726 51.5
Lalb_Chr04g0262651 Lupinus albus HOM05D004642 ORTHO05D005466 1.5e-80 305.1 727 50.8
arahy.Tifrunner.gnm1.ann1.CA04QB Arachis hypogaea HOM05D004642 ORTHO05D005466 5.4e-75 286.6 719 55.1
arahy.Tifrunner.gnm1.ann1.Z6VQ0W Arachis hypogaea HOM05D004642 ORTHO05D005466 5.4e-75 286.6 719 55.1
Prupe.3G071700 Prunus persica HOM05D004642 ORTHO05D005466 5.9e-74 283.1 713 36.0
Cfa002061 Carpinus fangiana HOM05D004642 ORTHO05D005466 1.0e-73 282.3 528 52.3
Glyma.11G187500 Glycine max HOM05D004642 ORTHO05D005466 8.6e-73 279.3 749 43.0
Thecc.06G086400 Theobroma cacao HOM05D004642 ORTHO05D005466 1.1e-72 278.9 766 49.7
Haze_16437 Corylus avellana HOM05D004642 ORTHO05D005466 1.9e-72 278.1 632 48.6
Gohir.A05G129515 Gossypium hirsutum HOM05D004642 ORTHO05D005466 1.5e-64 251.9 508 43.5
Nitab4.5_0000671g0060 Nicotiana tabacum HOM05D004642 ORTHO05D005466 2.5e-64 251.1 681 42.0
Potri.001G179600 Populus trichocarpa HOM05D004642 ORTHO05D005466 2.5e-64 251.1 500 39.2
Actinidia24760 Actinidia chinensis HOM05D004642 ORTHO05D005466 3.6e-63 247.3 544 41.5
Gorai.009G133100 Gossypium raimondii HOM05D004642 ORTHO05D005466 3.1e-62 244.2 536 42.7
CiPaw.01G239700 Carya illinoinensis HOM05D004642 ORTHO05D005466 6.8e-62 243.0 725 49.5
CiPaw.02G151400 Carya illinoinensis HOM05D004642 ORTHO05D005466 3.4e-61 240.7 715 47.1
Duzib192G0922 Durio zibethinus HOM05D004642 ORTHO05D005466 5.8e-61 240.0 557 47.4
Gohir.D05G129000 Gossypium hirsutum HOM05D004642 ORTHO05D005466 8.3e-60 236.1 537 42.1
Nitab4.5_0005851g0030 Nicotiana tabacum HOM05D004642 ORTHO05D005466 7.0e-59 233.0 722 39.6
PGR102G3321 Punica granatum HOM05D004642 ORTHO05D005466 2.1e-58 231.5 516 44.8
TAR626G0806 Trochodendron aralioides HOM05D004642 ORTHO05D005466 1.1e-56 225.7 673 45.9
vmacro18915 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 4.3e-56 223.8 562 37.9
Hma1.2p1_0323F.1_g125210 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 1.2e-55 222.2 726 48.5
Duzib235G0715 Durio zibethinus HOM05D004642 ORTHO05D005466 1.8e-54 218.4 702 47.0
Sopen03g039110 Solanum pennellii HOM05D004642 ORTHO05D005466 1.7e-52 211.8 716 43.2
Rhsim08G0221000 Rhododendron simsii HOM05D004642 ORTHO05D005466 2.9e-52 211.1 711 40.6
Atru.chr1.3266 Acer truncatum HOM05D004642 ORTHO05D005466 1.9e-51 208.4 727 50.2
PGSC0003DMG400002564 Solanum tuberosum HOM05D004642 ORTHO05D005466 9.2e-51 206.1 664 43.7
COL.COLO4_30362 Corchorus olitorius HOM05D004642 ORTHO05D005466 1.6e-50 205.3 742 51.5
Ciclev10025273m.g Citrus clementina HOM05D004642 ORTHO05D005466 2.7e-50 204.5 567 51.1
MD17G1195700 Malus domestica HOM05D004642 ORTHO05D005466 5.1e-49 200.3 724 33.6
Oeu033484.1 Olea europaea HOM05D004642 ORTHO05D005466 6.6e-49 199.9 492 41.3
CSS0030593 Camellia sinensis var. sinensis HOM05D004642 ORTHO05D005466 8.6e-49 199.5 568 50.2
CsaV3_7G033140 Cucumis sativus L. HOM05D004642 ORTHO05D005466 8.6e-49 199.5 668 48.4
Solyc03g120230.3 Solanum lycopersicum HOM05D004642 ORTHO05D005466 8.6e-49 199.5 664 44.1
arahy.Tifrunner.gnm1.ann1.D5EQ93 Arachis hypogaea HOM05D004642 ORTHO05D005466 1.1e-48 199.1 551 46.1
AUR62011627 Chenopodium quinoa HOM05D004642 ORTHO05D005466 1.5e-48 198.7 460 45.4
FvH4_6g31081 Fragaria vesca HOM05D004642 ORTHO05D005466 1.9e-48 198.4 719 54.0
AUR62016441 Chenopodium quinoa HOM05D004642 ORTHO05D005466 2.5e-48 198.0 467 44.5
Gorai.006G098800 Gossypium raimondii HOM05D004642 ORTHO05D005466 9.5e-48 196.1 531 33.1
ClCG09G002170 Citrullus lanatus HOM05D004642 ORTHO05D005466 1.6e-47 195.3 476 43.3
Lalb_Chr01g0012651 Lupinus albus HOM05D004642 ORTHO05D005466 1.6e-47 195.3 364 53.3
arahy.Tifrunner.gnm1.ann1.I53961 Arachis hypogaea HOM05D004642 ORTHO05D005466 2.8e-47 194.5 547 44.8
Gohir.D09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 4.7e-47 193.7 525 33.7
SalBow2G0306 Salvia bowleyana HOM05D004642 ORTHO05D005466 4.7e-47 193.7 668 43.4
Actinidia08974 Actinidia chinensis HOM05D004642 ORTHO05D005466 6.2e-47 193.4 728 39.6
FAN14G2337 Fragaria x ananassa HOM05D004642 ORTHO05D005466 6.2e-47 193.4 719 53.8
GSVIVG01017115001 Vitis vinifera HOM05D004642 ORTHO05D005466 8.1e-47 193.0 531 40.1
Aa31LG8G3170 Aethionema arabicum HOM05D004642 ORTHO05D005466 1.1e-46 192.6 512 37.9
Eucgr.F03012 Eucalyptus grandis HOM05D004642 ORTHO05D005466 3.1e-46 191.0 660 51.1
Gohir.A09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 5.2e-46 190.3 525 32.0
Sabra01G0147200 Salix brachista HOM05D004642 ORTHO05D005466 1.5e-45 188.7 823 38.8
Aqoxy7G01787 Aquilegia oxysepala HOM05D004642 ORTHO05D005466 1.3e-44 185.7 504 40.7
Thhalv10020153m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 6.4e-44 183.3 474 34.6
Lsat_1_v5_gn_4_103580 Lactuca sativa HOM05D004642 ORTHO05D005466 2.4e-43 181.4 517 34.8
Sed0016127 Sechium edule HOM05D004642 ORTHO05D005466 9.2e-43 179.5 584 43.8
vmacro16950 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 9.2e-43 179.5 428 43.5
Hund00614 Selenicereus undatus HOM05D004642 ORTHO05D005466 1.2e-42 179.1 638 46.9
MELO3C024228.2 Cucumis melo HOM05D004642 ORTHO05D005466 1.7e-41 175.3 668 46.3
FAN09G1651 Fragaria x ananassa HOM05D004642 ORTHO05D005466 1.7e-41 175.3 719 54.8
Dinv30514 Davidia involucrata HOM05D004642 ORTHO05D005466 1.5e-40 172.2 631 46.0
TWI75G1656 Tripterygium wilfordii HOM05D004642 ORTHO05D005466 1.5e-40 172.2 465 42.2
BraA03t13110Z Brassica rapa HOM05D004642 ORTHO05D005466 2.5e-40 171.4 516 41.7
MD09G1213800 Malus domestica HOM05D004642 ORTHO05D005466 7.3e-40 169.9 703 40.3
PSO782G0786 Papaver somniferum HOM05D004642 ORTHO05D005466 1.6e-39 168.7 454 30.0
A03p39630 Brassica napus HOM05D004642 ORTHO05D005466 4.7e-39 167.2 463 42.8
Manes.11G047800 Manihot esculenta HOM05D004642 ORTHO05D005466 1.1e-38 166.0 726 46.0
CARHR091130 Cardamine hirsuta HOM05D004642 ORTHO05D005466 4.0e-38 164.1 516 32.2
Ah.01g021290 Amaranthus hybridus HOM05D004642 ORTHO05D005466 5.2e-38 163.7 536 42.9
A05p33450 Brassica napus HOM05D004642 ORTHO05D005466 9.0e-38 162.9 494 39.9
Cc04_g03480 Coffea canephora HOM05D004642 ORTHO05D005466 5.8e-37 160.2 661 27.4
Peaxi162Scf00015g00335 Petunia axillaris HOM05D004642 ORTHO05D005466 2.2e-36 158.3 523 44.4
SGA_v2.0_scaffold4G01996 Striga asiatica HOM05D004642 ORTHO05D005466 8.4e-36 156.4 678 36.6
BcaB04g18872 Brassica carinata HOM05D004642 ORTHO05D005466 1.1e-35 156.0 532 39.5
Sed0016916 Sechium edule HOM05D004642 ORTHO05D005466 1.6e-34 152.1 700 39.1
BraA05t22169Z Brassica rapa HOM05D004642 ORTHO05D005466 4.6e-34 150.6 495 45.3
Rhsim12G0197600 Rhododendron simsii HOM05D004642 ORTHO05D005466 7.8e-34 149.8 717 41.4
BolC5t33791H Brassica oleracea HOM05D004642 ORTHO05D005466 1.3e-33 149.1 494 43.7
RcHm_v2.0_Chr2g0137781 Rosa chinensis HOM05D004642 ORTHO05D005466 3.0e-33 147.9 718 47.1
SalBow2G2616 Salvia bowleyana HOM05D004642 ORTHO05D005466 5.1e-33 147.1 730 49.6
Zm00001eb283760 Zea mays HOM05D004642 ORTHO05D005466 8.7e-33 146.4 556 34.0
BcaC01g03843 Brassica carinata HOM05D004642 ORTHO05D005466 2.5e-32 144.8 464 41.4
C03p48030 Brassica napus HOM05D004642 ORTHO05D005466 2.5e-32 144.8 464 41.4
BolC3t17082H Brassica oleracea HOM05D004642 ORTHO05D005466 2.5e-32 144.8 464 41.4
Nn2g11790 Nelumbo nucifera HOM05D004642 ORTHO05D005466 5.6e-32 143.7 508 34.1
EL10Ac9g21996 Beta vulgaris HOM05D004642 ORTHO05D005466 1.3e-31 142.5 429 48.7
Migut.D01034 Erythranthe guttata HOM05D004642 ORTHO05D005466 8.1e-31 139.8 646 43.8
FAN05G5776 Fragaria x ananassa HOM05D004642 ORTHO05D005466 9.0e-30 136.3 715 52.7
BcaB06g25698 Brassica carinata HOM05D004642 ORTHO05D005466 2.0e-29 135.2 464 38.4
Sp3g14350 Schrenkiella parvula HOM05D004642 ORTHO05D005466 2.0e-29 135.2 476 43.7
TAR636G0382 Trochodendron aralioides HOM05D004642 ORTHO05D005466 3.4e-29 134.4 188 44.1
CANSAT56G1090 Cannabis sativa HOM05D004642 ORTHO05D005466 2.2e-28 131.7 673 53.5
Lj5A61G44 Lonicera japonica HOM05D004642 ORTHO05D005466 2.2e-28 131.7 432 34.5
THA.LOC104817998 Tarenaya hassleriana HOM05D004642 ORTHO05D005466 8.4e-28 129.8 547 36.7
Hma1.2p1_0323F.1_g125200 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 1.4e-27 129.0 161 49.1
AT3G16000 Arabidopsis thaliana HOM05D004642 ORTHO05D005466 2.4e-27 128.3 482 42.1
BcaC09g48580 Brassica carinata HOM05D004642 ORTHO05D005466 7.1e-27 126.7 478 27.2
Carub.0003s1573 Capsella rubella HOM05D004642 ORTHO05D005466 9.3e-27 126.3 463 43.0
ECA248G0988 Erigeron canadensis HOM05D004642 ORTHO05D005466 3.5e-26 124.4 376 34.3
Nn8g39228 Nelumbo nucifera HOM05D004642 ORTHO05D005466 7.9e-26 123.2 672 40.5
AL3G28650 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 1.3e-25 122.5 478 41.8
CAN.G438.64 Capsicum annuum HOM05D004642 ORTHO05D005466 3.0e-25 121.3 690 44.5
C01p48370 Brassica napus HOM05D004642 ORTHO05D005466 6.7e-25 120.2 406 28.8
Glyma.11G237600 Glycine max HOM05D004642 ORTHO05D005466 6.7e-25 120.2 135 54.1
C05p50450 Brassica napus HOM05D004642 ORTHO05D005466 4.3e-24 117.5 492 42.7
MD09G1213500 Malus domestica HOM05D004642 ORTHO05D005466 4.3e-24 117.5 321 43.0
ATR0037G055 Amborella trichopoda HOM05D004642 ORTHO05D005466 5.6e-24 117.1 427 47.5
CDE06G0246 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 1.3e-23 115.9 446 24.2
Dinv38051 Davidia involucrata HOM05D004642 ORTHO05D005466 1.6e-23 115.5 334 31.4
HanXRQChr09g0275271 Helianthus annuus HOM05D004642 ORTHO05D005466 1.6e-23 115.5 489 42.5
unitig_744.g24335 Utricularia gibba HOM05D004642 ORTHO05D005466 6.2e-23 113.6 419 36.0
HPP92_020045 Vanilla planifolia HOM05D004642 ORTHO05D005466 2.0e-21 108.6 490 23.5
CDE07G1358 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 4.5e-21 107.5 443 23.7
unitig_578.g16688 Utricularia gibba HOM05D004642 ORTHO05D005466 5.8e-21 107.1 708 32.5
HanXRQChr16g0500971 Helianthus annuus HOM05D004642 ORTHO05D005466 6.4e-20 103.6 434 33.6
FAN02G1410 Fragaria x ananassa HOM05D004642 ORTHO05D005466 1.1e-19 102.8 242 36.4
Hund06610 Selenicereus undatus HOM05D004642 ORTHO05D005466 1.4e-19 102.4 178 36.0
BolC1t04795H Brassica oleracea HOM05D004642 ORTHO05D005466 2.4e-19 101.7 124 50.8
PSO063G4770 Papaver somniferum HOM05D004642 ORTHO05D005466 2.4e-19 101.7 371 24.3
Sc21g0005100 Simmondsia chinensis HOM05D004642 ORTHO05D005466 2.1e-18 98.6 678 44.5
MSTRG.9454 Avicennia marina HOM05D004642 ORTHO05D005466 4.6e-18 97.4 530 43.0
MD09G1212900 Malus domestica HOM05D004642 ORTHO05D005466 1.0e-17 96.3 128 47.7
BcaB04g20887 Brassica carinata HOM05D004642 ORTHO05D005466 2.5e-16 91.7 452 23.9
TAR624G0442 Trochodendron aralioides HOM05D004642 ORTHO05D005466 3.7e-15 87.8 90 53.3
HPP92_019980 Vanilla planifolia HOM05D004642 ORTHO05D005466 2.4e-14 85.1 370 42.2
Zm00001eb122200 Zea mays HOM05D004642 ORTHO05D005466 3.1e-14 84.7 583 40.1
SGA_v2.0_scaffold37G14818 Striga asiatica HOM05D004642 ORTHO05D005466 3.4e-13 81.3 459 46.4
TAR624G1258 Trochodendron aralioides HOM05D004642 ORTHO05D005466 1.3e-12 79.3 305 42.3
Os01g0180300 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 1.8e-09 68.9 484 27.5
MD09G1213400 Malus domestica HOM05D004642 ORTHO05D005466 1.5e-08 65.9 86 44.2
CDE07G0399 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 7.4e-08 63.5 458 23.4
COL.COLO4_36913 Corchorus olitorius HOM05D004642 ORTHO05D005466 2.8e-07 61.6 58 53.4
Cpa.g.sc1188.1 Carica papaya HOM05D004642 ORTHO05D005466 1.1e-06 59.7 310 55.5
MD09G1213300 Malus domestica HOM05D004642 ORTHO05D005466 2.4e-06 58.5 50 68.0


User provided reference genes

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