Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_19353_v3 Cicer arietinum L. HOM05D000278 ORTHO05D028857 1.4e-57 226.1 113 100.0
Ca_07624_v3 Cicer arietinum L. HOM05D000278 ORTHO05D008240 2.7e-42 175.3 109 83.5
Ca_05203_v3 Cicer arietinum L. HOM05D000278 ORTHO05D004673 1.6e-29 132.9 65 98.5
Ca_07625_v3 Cicer arietinum L. HOM05D000278 ORTHO05D004673 1.6e-29 132.9 65 98.5
Psat3g130480 Pisum sativum HOM05D000278 ORTHO05D004673 3.5e-29 131.7 65 96.9
Glyma.11G185500 Glycine max HOM05D000278 ORTHO05D004673 7.8e-29 130.6 65 96.9
Glyma.12G087300 Glycine max HOM05D000278 ORTHO05D004673 7.8e-29 130.6 65 96.9
Lj6g0017523 Lotus japonicus HOM05D000278 ORTHO05D004673 7.8e-29 130.6 65 96.9
VMungo1127G1082 Vigna mungo HOM05D000278 ORTHO05D004673 7.8e-29 130.6 65 96.9
Lj1g0004523 Lotus japonicus HOM05D000278 ORTHO05D004673 1.0e-28 130.2 65 95.4
TPR.G4726 Trifolium pratense HOM05D000278 ORTHO05D004673 1.3e-28 129.8 65 96.9
Lalb_Chr03g0043101 Lupinus albus HOM05D000278 ORTHO05D004673 2.9e-28 128.6 65 95.4
Lalb_Chr19g0124741 Lupinus albus HOM05D000278 ORTHO05D004673 2.9e-28 128.6 65 95.4
Medtr7g067470 Medicago truncatula HOM05D000278 ORTHO05D004673 3.8e-28 128.3 65 95.4
Medtr7g113470 Medicago truncatula HOM05D000278 ORTHO05D004673 3.8e-28 128.3 65 95.4
RhsimUnG0194000 Rhododendron simsii HOM05D000278 ORTHO05D004673 3.8e-28 128.3 65 93.8
TPR.G31895 Trifolium pratense HOM05D000278 ORTHO05D004673 3.8e-28 128.3 65 95.4
TWI56G0512 Tripterygium wilfordii HOM05D000278 ORTHO05D004673 3.8e-28 128.3 65 95.4
Actinidia37961 Actinidia chinensis HOM05D000278 ORTHO05D004673 5.0e-28 127.9 65 95.4
Duzib116G0529 Durio zibethinus HOM05D000278 ORTHO05D004673 5.0e-28 127.9 65 95.4
Manes.18G007600 Manihot esculenta HOM05D000278 ORTHO05D004673 5.0e-28 127.9 65 95.4
arahy.Tifrunner.gnm1.ann1.456QL1 Arachis hypogaea HOM05D000278 ORTHO05D004673 6.6e-28 127.5 65 95.4
arahy.Tifrunner.gnm1.ann1.N7I05Z Arachis hypogaea HOM05D000278 ORTHO05D004673 6.6e-28 127.5 65 95.4
Phvul.011G092200 Phaseolus vulgaris HOM05D000278 ORTHO05D004673 6.6e-28 127.5 65 95.4
RcHm_v2.0_Chr6g0303921 Rosa chinensis HOM05D000278 ORTHO05D004673 6.6e-28 127.5 65 93.8
SGA_v2.0_scaffold25G11193 Striga asiatica HOM05D000278 ORTHO05D004673 6.6e-28 127.5 65 93.8
Rhsim06G0057200 Rhododendron simsii HOM05D000278 ORTHO05D004673 8.6e-28 127.1 65 93.8
Nn6g31844 Nelumbo nucifera HOM05D000278 ORTHO05D004673 1.1e-27 126.7 65 93.8
Migut.C00506 Erythranthe guttata HOM05D000278 ORTHO05D004673 1.5e-27 126.3 65 93.8
FvH4_2g37790 Fragaria vesca HOM05D000278 ORTHO05D004673 1.5e-27 126.3 65 93.8
FAN15G3656 Fragaria x ananassa HOM05D000201 ORTHO05D004673 1.5e-27 126.3 65 93.8
FAN20G0278 Fragaria x ananassa HOM05D000278 ORTHO05D004673 1.5e-27 126.3 65 93.8
FAN27G1567 Fragaria x ananassa HOM05D000201 ORTHO05D004673 1.5e-27 126.3 65 93.8
Sed0026774 Sechium edule HOM05D000201 ORTHO05D004673 1.5e-27 126.3 65 93.8
Solyc11g069000.2 Solanum lycopersicum HOM05D000278 ORTHO05D004673 1.5e-27 126.3 65 93.8
Sopen11g027710 Solanum pennellii HOM05D000278 ORTHO05D004673 1.5e-27 126.3 65 93.8
PGSC0003DMG400019637 Solanum tuberosum HOM05D000278 ORTHO05D004673 1.5e-27 126.3 65 93.8
TWI36G1689 Tripterygium wilfordii HOM05D000278 ORTHO05D004673 1.5e-27 126.3 65 93.8
Actinidia29778 Actinidia chinensis HOM05D000278 ORTHO05D004673 1.9e-27 125.9 65 93.8
Ah.07g202860 Amaranthus hybridus HOM05D000278 ORTHO05D004673 1.9e-27 125.9 65 93.8
Ah.13g073410 Amaranthus hybridus HOM05D000278 ORTHO05D004673 1.9e-27 125.9 65 93.8
Aqoxy6G01859 Aquilegia oxysepala HOM05D000278 ORTHO05D004673 1.9e-27 125.9 65 93.8
Aqoxy7G00805 Aquilegia oxysepala HOM05D000278 ORTHO05D004673 1.9e-27 125.9 65 93.8
MSTRG.22358 Avicennia marina HOM05D000278 ORTHO05D004673 1.9e-27 125.9 65 93.8
EL10Ac3g06108 Beta vulgaris HOM05D000278 ORTHO05D004673 1.9e-27 125.9 65 93.8
Cpa.g.sc26.235 Carica papaya HOM05D000278 ORTHO05D004673 1.9e-27 125.9 65 93.8
AUR62002414 Chenopodium quinoa HOM05D000278 ORTHO05D004673 1.9e-27 125.9 65 93.8
AUR62023775 Chenopodium quinoa HOM05D000278 ORTHO05D004673 1.9e-27 125.9 65 93.8
Ciclev10000836m.g Citrus clementina HOM05D000278 ORTHO05D004673 1.9e-27 125.9 65 93.8
COL.COLO4_26052 Corchorus olitorius HOM05D000278 ORTHO05D004673 1.9e-27 125.9 65 93.8
Dinv39570 Davidia involucrata HOM05D000278 ORTHO05D004673 1.9e-27 125.9 65 93.8
Duzib093G1085 Durio zibethinus HOM05D000278 ORTHO05D004673 1.9e-27 125.9 65 93.8
ECA240G2245 Erigeron canadensis HOM05D000278 ORTHO05D004673 1.9e-27 125.9 65 93.8
Gohir.A05G181500 Gossypium hirsutum HOM05D000278 ORTHO05D004673 1.9e-27 125.9 65 93.8
Gohir.D05G184500 Gossypium hirsutum HOM05D000278 ORTHO05D004673 1.9e-27 125.9 65 93.8
Gorai.009G190000 Gossypium raimondii HOM05D000278 ORTHO05D004673 1.9e-27 125.9 65 93.8
HanXRQChr05g0150651 Helianthus annuus HOM05D000278 ORTHO05D004673 1.9e-27 125.9 65 93.8
Lsat_1_v5_gn_5_47521 Lactuca sativa HOM05D000278 ORTHO05D004673 1.9e-27 125.9 65 93.8
Nitab4.5_0001163g0130 Nicotiana tabacum HOM05D000278 ORTHO05D004673 1.9e-27 125.9 65 93.8
Nitab4.5_0012306g0010 Nicotiana tabacum HOM05D000278 ORTHO05D004673 1.9e-27 125.9 65 93.8
Potri.001G341100 Populus trichocarpa HOM05D000278 ORTHO05D004673 1.9e-27 125.9 65 93.8
Potri.006G128600 Populus trichocarpa HOM05D000278 ORTHO05D004673 1.9e-27 125.9 65 93.8
Rhsim04G0232000 Rhododendron simsii HOM05D000278 ORTHO05D004673 1.9e-27 125.9 65 92.3
Sc09g0003140 Simmondsia chinensis HOM05D000278 ORTHO05D004673 1.9e-27 125.9 65 93.8
SGA_v2.0_scaffold275G46553 Striga asiatica HOM05D000278 ORTHO05D004673 1.9e-27 125.9 65 93.8
TAR381G1660 Trochodendron aralioides HOM05D000278 ORTHO05D004673 1.9e-27 125.9 65 93.8
GSVIVG01008708001 Vitis vinifera HOM05D000278 ORTHO05D004673 1.9e-27 125.9 65 93.8
CiPaw.08G070800 Carya illinoinensis HOM05D000278 ORTHO05D004673 2.5e-27 125.6 70 88.6
Haze_22737 Corylus avellana HOM05D000278 ORTHO05D004673 2.5e-27 125.6 70 88.6
Gohir.A05G255100 Gossypium hirsutum HOM05D000278 ORTHO05D004673 2.5e-27 125.6 65 92.3
Gohir.D05G256700 Gossypium hirsutum HOM05D000278 ORTHO05D004673 2.5e-27 125.6 65 92.3
Gorai.009G268200 Gossypium raimondii HOM05D000278 ORTHO05D004673 2.5e-27 125.6 65 92.3
Peaxi162Scf00892g00123 Petunia axillaris HOM05D000278 ORTHO05D004673 2.5e-27 125.6 65 92.3
Prupe.1G357200 Prunus persica HOM05D000278 ORTHO05D004673 2.5e-27 125.6 65 92.3
THA.LOC104816947 Tarenaya hassleriana HOM05D000278 ORTHO05D004673 3.3e-27 125.2 65 92.3
MSTRG.24226 Avicennia marina HOM05D000278 ORTHO05D004673 4.3e-27 124.8 65 92.3
CAN.G1432.19 Capsicum annuum HOM05D000278 ORTHO05D004673 4.3e-27 124.8 65 92.3
Cfa014030 Carpinus fangiana HOM05D000201 ORTHO05D004673 4.3e-27 124.8 65 92.3
CiPaw.07G141600 Carya illinoinensis HOM05D000278 ORTHO05D004673 4.3e-27 124.8 65 92.3
Dinv31912 Davidia involucrata HOM05D000278 ORTHO05D004673 4.3e-27 124.8 65 92.3
MBI08_g05384_MAGBIO Magnolia biondii HOM05D000278 ORTHO05D004673 4.3e-27 124.8 65 92.3
MD08G1005100 Malus domestica HOM05D000278 ORTHO05D004673 4.3e-27 124.8 65 92.3
MD15G1004500 Malus domestica HOM05D000278 ORTHO05D004673 4.3e-27 124.8 65 92.3
Manes.05G141000 Manihot esculenta HOM05D000278 ORTHO05D004673 4.3e-27 124.8 65 92.3
Os03g0619400 Oryza sativa ssp. japonica HOM05D000278 ORTHO05D004673 4.3e-27 124.8 65 90.8
PGR083G0799 Punica granatum HOM05D000278 ORTHO05D004673 4.3e-27 124.8 65 92.3
QL02p013553 Quercus lobata HOM05D000278 ORTHO05D004673 4.3e-27 124.8 65 92.3
Hund12360 Selenicereus undatus HOM05D000278 ORTHO05D004673 4.3e-27 124.8 65 92.3
Thecc.08G054800 Theobroma cacao HOM05D000278 ORTHO05D004673 4.3e-27 124.8 65 92.3
CSS0037161 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004673 5.6e-27 124.4 65 92.3
CAN.G546.19 Capsicum annuum HOM05D000278 ORTHO05D004673 5.6e-27 124.4 65 92.3
DCAR_009520 Daucus carota HOM05D000278 ORTHO05D004673 5.6e-27 124.4 65 92.3
Eucgr.F01711 Eucalyptus grandis HOM05D000278 ORTHO05D004673 5.6e-27 124.4 65 92.3
HanXRQChr02g0048731 Helianthus annuus HOM05D000278 ORTHO05D004673 5.6e-27 124.4 65 92.3
HanXRQChr05g0150641 Helianthus annuus HOM05D000278 ORTHO05D004673 5.6e-27 124.4 65 92.3
Lsat_1_v5_gn_3_23880 Lactuca sativa HOM05D000278 ORTHO05D004673 5.6e-27 124.4 65 92.3
Nitab4.5_0000329g0270 Nicotiana tabacum HOM05D000278 ORTHO05D004673 5.6e-27 124.4 65 92.3
Nitab4.5_0005092g0060 Nicotiana tabacum HOM05D000278 ORTHO05D004673 5.6e-27 124.4 65 92.3
PSO541G0609 Papaver somniferum HOM05D000278 ORTHO05D004673 5.6e-27 124.4 65 92.3
PSO675G6493 Papaver somniferum HOM05D000278 ORTHO05D004673 5.6e-27 124.4 65 92.3
SMO116G0467 Selaginella moellendorffii HOM05D000278 ORTHO05D004673 5.6e-27 124.4 65 89.2
Nn5g30892 Nelumbo nucifera HOM05D000278 ORTHO05D004673 7.3e-27 124.0 65 92.3
ATR0049G084 Amborella trichopoda HOM05D000278 ORTHO05D004673 9.5e-27 123.6 65 92.3
AagrBONN_evm.TU.Sc2ySwM_228.4022 Anthoceros agrestis HOM05D000278 ORTHO05D004673 9.5e-27 123.6 65 90.8
ClCG11G001640 Citrullus lanatus HOM05D000278 ORTHO05D004673 9.5e-27 123.6 65 92.3
MELO3C004636.2 Cucumis melo HOM05D000278 ORTHO05D004673 9.5e-27 123.6 65 92.3
CsaV3_2G001340 Cucumis sativus L. HOM05D000278 ORTHO05D004673 9.5e-27 123.6 65 92.3
Dinv32530 Davidia involucrata HOM05D000278 ORTHO05D004673 9.5e-27 123.6 65 90.8
SalBow6G3216 Salvia bowleyana HOM05D000278 ORTHO05D004673 9.5e-27 123.6 65 90.8
vmacro19453 Vaccinium macrocarpon HOM05D000278 ORTHO05D004673 9.5e-27 123.6 65 90.8
BcaB05g22804 Brassica carinata HOM05D000278 ORTHO05D004673 1.2e-26 123.2 65 90.8
BcaC03g13811 Brassica carinata HOM05D000278 ORTHO05D004673 1.2e-26 123.2 65 90.8
BNapus_Darmor_BZH_scaffold_38p01290 Brassica napus HOM05D000278 ORTHO05D004673 1.2e-26 123.2 65 90.8
C02p10490 Brassica napus HOM05D000278 ORTHO05D004673 1.2e-26 123.2 65 90.8
BolC2t07080H Brassica oleracea HOM05D000278 ORTHO05D004673 1.2e-26 123.2 65 90.8
BraA02t05601Z Brassica rapa HOM05D000278 ORTHO05D004673 1.2e-26 123.2 65 90.8
Sed0016101 Sechium edule HOM05D000278 ORTHO05D004673 1.2e-26 123.2 65 90.8
THA.LOC104800468 Tarenaya hassleriana HOM05D000278 ORTHO05D004673 1.2e-26 123.2 65 90.8
THA.LOC104826462 Tarenaya hassleriana HOM05D000278 ORTHO05D004673 1.2e-26 123.2 65 90.8
unitig_744.g24606 Utricularia gibba HOM05D000278 ORTHO05D004673 1.2e-26 123.2 65 90.8
Lj4A877T44 Lonicera japonica HOM05D000278 ORTHO05D004673 1.6e-26 122.9 65 92.3
CDE09G0059 Ceratophyllum demersum HOM05D000278 ORTHO05D004673 2.1e-26 122.5 65 90.8
Atru.chr13.180 Acer truncatum HOM05D000278 ORTHO05D004673 2.8e-26 122.1 65 89.2
CAN.G1001.51 Capsicum annuum HOM05D000278 ORTHO05D004673 2.8e-26 122.1 65 90.8
Duzib041G0210 Durio zibethinus HOM05D000278 ORTHO05D004673 2.8e-26 122.1 65 87.7
Mapoly0071s0007 Marchantia polymorpha HOM05D000278 ORTHO05D004673 2.8e-26 122.1 65 89.2
TAR625G1357 Trochodendron aralioides HOM05D000278 ORTHO05D004673 2.8e-26 122.1 65 90.8
BcaB08g37325 Brassica carinata HOM05D000278 ORTHO05D004673 4.7e-26 121.3 65 89.2
BcaC04g19481 Brassica carinata HOM05D000278 ORTHO05D004673 4.7e-26 121.3 65 89.2
A03p10340 Brassica napus HOM05D000278 ORTHO05D004673 4.7e-26 121.3 65 89.2
A10p19170 Brassica napus HOM05D000278 ORTHO05D004673 4.7e-26 121.3 65 89.2
C03p11870 Brassica napus HOM05D000278 ORTHO05D004673 4.7e-26 121.3 65 89.2
C09p55210 Brassica napus HOM05D000278 ORTHO05D004673 4.7e-26 121.3 65 89.2
BolC3t13657H Brassica oleracea HOM05D000278 ORTHO05D004673 4.7e-26 121.3 65 89.2
BolC9t58390H Brassica oleracea HOM05D000278 ORTHO05D004673 4.7e-26 121.3 65 89.2
BraA03t10345Z Brassica rapa HOM05D000278 ORTHO05D004673 4.7e-26 121.3 65 89.2
BraA10t43992Z Brassica rapa HOM05D000278 ORTHO05D004673 4.7e-26 121.3 65 89.2
CBR_g20448 Chara braunii HOM05D000278 ORTHO05D004673 4.7e-26 121.3 65 89.2
Thhalv10013239m.g Eutrema salsugineum HOM05D000278 ORTHO05D004673 4.7e-26 121.3 65 89.2
Sp6g23630 Schrenkiella parvula HOM05D000278 ORTHO05D004673 4.7e-26 121.3 65 89.2
Cfa026985 Carpinus fangiana HOM05D000278 ORTHO05D004673 6.1e-26 120.9 66 83.3
Nn6g31945 Nelumbo nucifera HOM05D000278 ORTHO05D028857 6.1e-26 120.9 65 87.7
Os05g0556700 Oryza sativa ssp. japonica HOM05D000278 ORTHO05D004673 6.1e-26 120.9 65 87.7
PGSC0003DMG400012727 Solanum tuberosum HOM05D000278 ORTHO05D004673 6.1e-26 120.9 65 90.8
Zm00001eb127430 Zea mays HOM05D000278 ORTHO05D004673 6.1e-26 120.9 65 89.2
Cc01_g07800 Coffea canephora HOM05D000278 ORTHO05D004673 8.0e-26 120.6 65 89.2
Pp3c5_16830 Physcomitrium patens HOM05D000278 ORTHO05D004673 1.4e-25 119.8 65 87.7
Aa31LG1G13870 Aethionema arabicum HOM05D000278 ORTHO05D004673 1.8e-25 119.4 65 87.7
AL6G32440 Arabidopsis lyrata HOM05D000278 ORTHO05D004673 1.8e-25 119.4 65 87.7
AT5G20890 Arabidopsis thaliana HOM05D000278 ORTHO05D004673 1.8e-25 119.4 65 87.7
Carub.0006s1918 Capsella rubella HOM05D000278 ORTHO05D004673 1.8e-25 119.4 65 87.7
CARHR191960 Cardamine hirsuta HOM05D000278 ORTHO05D004673 1.8e-25 119.4 65 87.7
Pp3c6_15940 Physcomitrium patens HOM05D000278 ORTHO05D004673 2.3e-25 119.0 65 86.2
Nn1g03634 Nelumbo nucifera HOM05D000278 ORTHO05D004673 3.0e-25 118.6 65 86.2
Eucgr.F03537 Eucalyptus grandis HOM05D000278 ORTHO05D004673 6.8e-25 117.5 65 86.2
Zm00001eb130780 Zea mays HOM05D000278 ORTHO05D004673 6.8e-25 117.5 65 83.1
PRCOL_00000789 Prasinoderma coloniale HOM05D000278 ORTHO05D004673 1.2e-24 116.7 65 83.1
Nn2g11831 Nelumbo nucifera HOM05D000278 ORTHO05D004673 4.4e-24 114.8 65 84.6
MCO14G488 Micromonas commoda HOM05D000278 ORTHO05D004673 7.5e-24 114.0 66 81.8
Cre09.g416750 Chlamydomonas reinhardtii HOM05D000278 ORTHO05D004673 9.8e-24 113.6 65 83.1
Hma1.2p1_1100F.1_g257140 Hydrangea macrophylla HOM05D000278 ORTHO05D004673 1.3e-23 113.2 68 86.8
Haze_26336 Corylus avellana HOM05D000278 ORTHO05D004673 5.4e-22 107.8 65 72.3
SalBow6G7259 Salvia bowleyana HOM05D007893 ORTHO05D010042 3.3e-19 98.6 57 82.5
MBI15_g40394_MAGBIO Magnolia biondii HOM05D000030 ORTHO05D010488 4.7e-18 94.7 48 91.7
Nn3g20772 Nelumbo nucifera HOM05D000513 ORTHO05D011790 1.1e-17 93.6 99 55.6
Hma1.2p1_1041F.1_g251020 Hydrangea macrophylla HOM05D000278 ORTHO05D028857 2.0e-16 89.4 53 83.0
Hma1.2p1_1161F.1_g262545 Hydrangea macrophylla HOM05D000278 ORTHO05D028857 9.8e-16 87.0 53 81.1
Hma1.2p1_0149F.1_g066520 Hydrangea macrophylla HOM05D000278 ORTHO05D004673 8.3e-15 84.0 50 86.0
Hma1.2p1_1041F.1_g251040 Hydrangea macrophylla HOM05D003034 ORTHO05D003815 1.6e-13 79.7 52 76.9
Hma1.2p1_1041F.1_g251015 Hydrangea macrophylla HOM05D003034 ORTHO05D003815 7.8e-13 77.4 52 75.0
Duzib133G0408 Durio zibethinus HOM05D000278 ORTHO05D004673 5.8e-08 61.2 32 90.6
Hma1.2p1_1100F.1_g257110 Hydrangea macrophylla HOM05D000278 ORTHO05D004673 2.2e-07 59.3 31 87.1
Nn4g25474 Nelumbo nucifera HOM05D000278 ORTHO05D004673 3.2e-06 55.5 61 52.5


User provided reference genes

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