Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_19290_v3 Cicer arietinum L. HOM05D001944 ORTHO05D011318 1.7e-279 965.7 597 100.0
Medtr4g058650 Medicago truncatula HOM05D001944 ORTHO05D011318 4.2e-134 482.6 672 53.6
TPR.G6160 Trifolium pratense HOM05D001944 ORTHO05D011318 5.2e-124 449.1 619 54.3
Psat7g192240 Pisum sativum HOM05D001944 ORTHO05D011318 5.4e-121 439.1 744 47.2
Glyma.12G077400 Glycine max HOM05D001944 ORTHO05D011318 4.6e-104 382.9 614 47.1
Glyma.11G196900 Glycine max HOM05D001944 ORTHO05D011318 7.3e-102 375.6 610 45.6
Lj3g0022042 Lotus japonicus HOM05D001944 ORTHO05D011318 4.4e-99 366.3 649 47.5
Lalb_Chr01g0004401 Lupinus albus HOM05D001944 ORTHO05D011318 2.1e-85 320.9 575 42.4
Lalb_Chr19g0137131 Lupinus albus HOM05D001944 ORTHO05D011318 3.2e-81 307.0 602 39.7
arahy.Tifrunner.gnm1.ann1.ST0ZZW Arachis hypogaea HOM05D001944 ORTHO05D011318 3.5e-72 276.9 619 38.1
arahy.Tifrunner.gnm1.ann1.H0XM2A Arachis hypogaea HOM05D001944 ORTHO05D011318 4.3e-70 270.0 619 37.6
Phvul.011G081700 Phaseolus vulgaris HOM05D001944 ORTHO05D011318 2.1e-69 267.7 594 39.1
Lj3g0013525 Lotus japonicus HOM05D001944 ORTHO05D002405 2.8e-69 267.3 630 43.8
Lalb_Chr24g0394751 Lupinus albus HOM05D001944 ORTHO05D002405 4.5e-67 260.0 608 38.2
VMungo1127G1376 Vigna mungo HOM05D001944 ORTHO05D011318 3.5e-64 250.4 608 38.2
TPR.G25038 Trifolium pratense HOM05D001944 ORTHO05D011318 9.0e-60 235.7 554 38.6
Ca_01395_v3 Cicer arietinum L. HOM05D001944 ORTHO05D002405 5.5e-57 226.5 424 40.6
Ca_01379_v3 Cicer arietinum L. HOM05D001944 ORTHO05D002405 3.9e-55 220.3 602 33.9
arahy.Tifrunner.gnm1.ann1.D4VV12 Arachis hypogaea HOM05D001944 ORTHO05D002405 5.0e-50 203.4 574 34.3
arahy.Tifrunner.gnm1.ann1.02PMC1 Arachis hypogaea HOM05D001944 ORTHO05D002405 5.5e-49 199.9 577 33.6
TPR.G9836 Trifolium pratense HOM05D001944 ORTHO05D011318 3.7e-45 187.2 534 35.8
Medtr2g095030 Medicago truncatula HOM05D001944 ORTHO05D002405 7.7e-43 179.5 423 36.9
TPR.G11481 Trifolium pratense HOM05D001944 ORTHO05D002405 1.7e-42 178.3 610 32.3
Psat5g279720 Pisum sativum HOM05D001944 ORTHO05D002405 2.0e-38 164.9 630 30.8
GSVIVG01025215001 Vitis vinifera HOM05D001944 ORTHO05D002405 1.7e-34 151.8 422 34.1
Glyma.13G324500 Glycine max HOM05D001944 ORTHO05D002405 4.2e-33 147.1 429 35.2
Cfa011296 Carpinus fangiana HOM05D001944 ORTHO05D002405 1.2e-32 145.6 261 40.6
QL01p026770 Quercus lobata HOM05D001944 ORTHO05D002405 3.6e-32 144.1 575 29.9
Manes.03G122401 Manihot esculenta HOM05D001944 ORTHO05D002405 3.3e-30 137.5 425 32.5
Prupe.6G104600 Prunus persica HOM05D001944 ORTHO05D002405 4.4e-30 137.1 439 31.9
Thecc.09G343900 Theobroma cacao HOM05D001944 ORTHO05D002405 4.8e-29 133.7 432 31.5
Phvul.005G133500 Phaseolus vulgaris HOM05D001944 ORTHO05D002405 1.1e-28 132.5 446 33.0
Duzib168G0647 Durio zibethinus HOM05D001944 ORTHO05D002405 2.4e-28 131.3 462 31.0
Glyma.12G175400 Glycine max HOM05D001944 ORTHO05D002405 1.2e-27 129.0 437 32.7
Actinidia07154 Actinidia chinensis HOM05D001944 ORTHO05D002405 1.6e-27 128.6 420 31.4
FAN16G2569 Fragaria x ananassa HOM05D001944 ORTHO05D002405 8.5e-26 122.9 456 32.5
RcHm_v2.0_Chr5g0058411 Rosa chinensis HOM05D001944 ORTHO05D002405 1.5e-25 122.1 453 32.7
Cpa.g.sc311.2 Carica papaya HOM05D001944 ORTHO05D002405 2.5e-25 121.3 415 30.6
TWI79G1706 Tripterygium wilfordii HOM05D001944 ORTHO05D002405 7.2e-25 119.8 433 29.8
Potri.005G010133 Populus trichocarpa HOM05D001944 ORTHO05D002405 2.1e-24 118.2 208 40.9
Ciclev10027663m.g Citrus clementina HOM05D001944 ORTHO05D002405 4.7e-24 117.1 450 30.4
FAN21G2742 Fragaria x ananassa HOM05D001944 ORTHO05D002405 4.7e-24 117.1 453 32.2
CSS0012038 Camellia sinensis var. sinensis HOM05D001944 ORTHO05D002405 6.1e-24 116.7 412 31.3
TWI31G0996 Tripterygium wilfordii HOM05D001944 ORTHO05D002405 1.4e-23 115.5 446 29.4
CsaV3_1G013920 Cucumis sativus L. HOM05D001944 ORTHO05D002405 3.0e-23 114.4 429 30.1
Dinv01067 Davidia involucrata HOM05D001944 ORTHO05D002405 4.0e-23 114.0 390 31.8
FvH4_3g31740 Fragaria vesca HOM05D001944 ORTHO05D002405 5.2e-23 113.6 450 31.1
MELO3C004905.2 Cucumis melo HOM05D001944 ORTHO05D002405 6.8e-23 113.2 442 31.2
FAN11G3960 Fragaria x ananassa HOM05D001944 ORTHO05D002405 6.8e-23 113.2 450 31.1
VMungo1080G1631 Vigna mungo HOM05D001944 ORTHO05D002405 6.8e-23 113.2 200 40.5
Haze_23780 Corylus avellana HOM05D001944 ORTHO05D002405 8.8e-23 112.8 298 34.2
TAR636G3431 Trochodendron aralioides HOM05D001944 ORTHO05D002405 2.0e-22 111.7 433 30.0
CiPaw.14G085200 Carya illinoinensis HOM05D001944 ORTHO05D002405 2.6e-22 111.3 577 28.4
Cc01_g10870 Coffea canephora HOM05D001944 ORTHO05D002405 4.4e-22 110.5 400 30.2
MD03G1121600 Malus domestica HOM05D001944 ORTHO05D002405 4.4e-22 110.5 426 32.9
MD11G1139900 Malus domestica HOM05D001944 ORTHO05D002405 6.3e-21 106.7 435 30.6
ClCG03G002980 Citrullus lanatus HOM05D001944 ORTHO05D002405 1.8e-20 105.1 458 28.8
Sabra05G0007500 Salix brachista HOM05D001944 ORTHO05D002405 7.0e-20 103.2 209 37.8
Prupe.6G104700 Prunus persica HOM05D001944 ORTHO05D002405 1.2e-19 102.4 427 31.6
Aqoxy1G01204 Aquilegia oxysepala HOM05D001944 ORTHO05D002405 3.5e-19 100.9 375 29.1
Rhsim13G0096400 Rhododendron simsii HOM05D001944 ORTHO05D002405 4.5e-19 100.5 379 30.3
Gorai.004G230500 Gossypium raimondii HOM05D001944 ORTHO05D002405 7.7e-19 99.8 254 32.7
COL.COLO4_18305 Corchorus olitorius HOM05D001944 ORTHO05D002405 1.7e-18 98.6 420 28.8
Gohir.A08G199401 Gossypium hirsutum HOM05D001944 ORTHO05D002405 3.3e-17 94.4 256 32.0
Hma1.2p1_0307F.1_g119910 Hydrangea macrophylla HOM05D001944 ORTHO05D002405 4.2e-17 94.0 373 29.0
AUR62022774 Chenopodium quinoa HOM05D001944 ORTHO05D002405 5.5e-17 93.6 418 28.5
TAR369G0775 Trochodendron aralioides HOM05D001944 ORTHO05D002405 5.5e-17 93.6 625 28.2
MD11G1140000 Malus domestica HOM05D001944 ORTHO05D002405 7.2e-17 93.2 441 29.7
Actinidia03719 Actinidia chinensis HOM05D001944 ORTHO05D002405 9.5e-17 92.8 239 36.4
Peaxi162Scf00167g00092 Petunia axillaris HOM05D001944 ORTHO05D002405 1.2e-16 92.4 499 27.1
Dinv32719 Davidia involucrata HOM05D001944 ORTHO05D002405 2.1e-16 91.7 197 38.1
Potri.013G006000 Populus trichocarpa HOM05D001944 ORTHO05D002405 2.1e-16 91.7 415 28.2
TAR633G2605 Trochodendron aralioides HOM05D001944 ORTHO05D002405 3.6e-16 90.9 256 32.0
CSS0007832 Camellia sinensis var. sinensis HOM05D001944 ORTHO05D002405 1.0e-15 89.4 415 27.2
Rhsim01G0215200 Rhododendron simsii HOM05D001944 ORTHO05D014293 3.0e-15 87.8 380 29.5
vmacro03215 Vaccinium macrocarpon HOM05D001944 ORTHO05D002405 3.0e-15 87.8 418 27.3
Gohir.A05G105000 Gossypium hirsutum HOM05D001944 ORTHO05D002405 6.8e-15 86.7 213 33.3
Nitab4.5_0006619g0020 Nicotiana tabacum HOM05D001944 ORTHO05D002405 6.8e-15 86.7 493 27.2
Potri.004G212700 Populus trichocarpa HOM05D001944 ORTHO05D002405 6.8e-15 86.7 268 31.3
Sed0024562 Sechium edule HOM05D001944 ORTHO05D002405 8.9e-15 86.3 444 25.5
PGR102G2473 Punica granatum HOM05D001944 ORTHO05D002405 1.2e-14 85.9 220 34.5
Nn2g13727 Nelumbo nucifera HOM05D001944 ORTHO05D002405 1.5e-14 85.5 198 32.8
Sc21g0003900 Simmondsia chinensis HOM05D001944 ORTHO05D002405 2.0e-14 85.1 379 29.3
Hund01491 Selenicereus undatus HOM05D001944 ORTHO05D002405 5.7e-14 83.6 207 34.3
Actinidia20444 Actinidia chinensis HOM05D001944 ORTHO05D002405 1.7e-13 82.0 377 30.5
Gohir.D05G104800 Gossypium hirsutum HOM05D001944 ORTHO05D002405 1.7e-13 82.0 219 32.9
Gorai.009G108800 Gossypium raimondii HOM05D001944 ORTHO05D002405 2.8e-13 81.3 213 32.9
Nitab4.5_0000181g0180 Nicotiana tabacum HOM05D001944 ORTHO05D002405 1.4e-12 79.0 497 27.0
AUR62029227 Chenopodium quinoa HOM05D001944 ORTHO05D002405 2.4e-12 78.2 378 27.8
AUR62029226 Chenopodium quinoa HOM05D001944 ORTHO05D002405 3.2e-12 77.8 209 33.5
Migut.N02586 Erythranthe guttata HOM05D001944 ORTHO05D002405 2.0e-11 75.1 163 38.0
PSO339G1466 Papaver somniferum HOM05D001944 ORTHO05D002405 2.0e-11 75.1 212 29.2
CAN.G171.6 Capsicum annuum HOM05D001944 ORTHO05D002405 2.7e-11 74.7 483 25.1
Peaxi162Scf00948g00114 Petunia axillaris HOM05D001944 ORTHO05D002405 4.5e-11 73.9 424 26.4
FvH4_4g08540 Fragaria vesca HOM05D001944 ORTHO05D020674 1.0e-10 72.8 208 35.6
PSO063G0478 Papaver somniferum HOM05D001944 ORTHO05D002405 1.0e-10 72.8 211 30.3
Aqoxy7G00183 Aquilegia oxysepala HOM05D001944 ORTHO05D002405 1.3e-10 72.4 172 31.4
Oeu036621.1 Olea europaea HOM05D001944 ORTHO05D002405 1.3e-10 72.4 81 38.3
Lj2C1021G5 Lonicera japonica HOM05D001944 ORTHO05D002405 2.3e-10 71.6 494 26.5
Dinv37298 Davidia involucrata HOM05D001944 ORTHO05D002405 3.9e-10 70.9 196 32.7
vmacro14422 Vaccinium macrocarpon HOM05D001944 ORTHO05D002405 3.9e-10 70.9 379 28.0
Oeu013469.1 Olea europaea HOM05D001944 ORTHO05D002405 6.6e-10 70.1 438 24.4
EL10Ac9g22555 Beta vulgaris HOM05D001944 ORTHO05D002405 8.6e-10 69.7 420 26.7
Ciclev10029237m.g Citrus clementina HOM05D001944 ORTHO05D002405 8.6e-10 69.7 255 31.8
FAN12G2222 Fragaria x ananassa HOM05D001944 ORTHO05D020674 8.6e-10 69.7 230 31.3
Solyc06g010240.3 Solanum lycopersicum HOM05D001944 ORTHO05D002405 1.1e-09 69.3 477 28.3
MSTRG.17786 Avicennia marina HOM05D001944 ORTHO05D002405 1.9e-09 68.6 398 26.9
FAN17G2018 Fragaria x ananassa HOM05D001944 ORTHO05D020674 1.9e-09 68.6 405 27.4
Thecc.05G062600 Theobroma cacao HOM05D001944 ORTHO05D002405 2.5e-09 68.2 203 30.0
Solyc11g069610.3 Solanum lycopersicum HOM05D001944 ORTHO05D002405 3.3e-09 67.8 412 26.2
Medtr2g094970 Medicago truncatula HOM05D001944 ORTHO05D002405 4.3e-09 67.4 226 31.9
Nn2g11517 Nelumbo nucifera HOM05D001944 ORTHO05D002405 4.3e-09 67.4 258 29.1
Duzib128G0909 Durio zibethinus HOM05D001944 ORTHO05D002405 7.3e-09 66.6 250 28.0
Sopen11g028320 Solanum pennellii HOM05D001944 ORTHO05D002405 1.2e-08 65.9 375 26.4
Sopen06g005090 Solanum pennellii HOM05D001944 ORTHO05D002405 1.6e-08 65.5 473 27.9
THA.LOC104800593 Tarenaya hassleriana HOM05D001944 ORTHO05D002405 2.1e-08 65.1 189 31.2
vmacro20024 Vaccinium macrocarpon HOM05D001944 ORTHO05D017225 2.8e-08 64.7 124 33.9
Solyc10g011940.1 Solanum lycopersicum HOM05D001944 ORTHO05D002405 3.6e-08 64.3 77 41.6
TWI74G0797 Tripterygium wilfordii HOM05D001944 ORTHO05D002405 4.7e-08 63.9 192 32.8
Migut.J00530 Erythranthe guttata HOM05D001944 ORTHO05D017225 6.1e-08 63.5 261 28.7
CSS0009803 Camellia sinensis var. sinensis HOM05D001944 ORTHO05D017225 8.0e-08 63.2 189 29.6
CSS0041121 Camellia sinensis var. sinensis HOM05D001944 ORTHO05D017225 8.0e-08 63.2 189 29.6
Oeu056302.1 Olea europaea HOM05D001944 ORTHO05D002405 8.0e-08 63.2 274 27.7
Nitab4.5_0000101g0280 Nicotiana tabacum HOM05D001944 ORTHO05D002405 1.0e-07 62.8 254 28.3
Actinidia24117 Actinidia chinensis HOM05D001944 ORTHO05D002405 1.4e-07 62.4 282 29.4
DCAR_022760 Daucus carota HOM05D001944 ORTHO05D002405 1.4e-07 62.4 80 43.8
QL93p2013_0009 Quercus lobata HOM05D001944 ORTHO05D002405 1.4e-07 62.4 205 28.3
QL07p044103 Quercus lobata HOM05D001944 ORTHO05D002405 1.8e-07 62.0 205 28.3
Sed0004333 Sechium edule HOM05D001944 ORTHO05D002405 1.8e-07 62.0 186 32.8
PGSC0003DMG400019409 Solanum tuberosum HOM05D001944 ORTHO05D002405 2.3e-07 61.6 170 30.6
Nitab4.5_0005320g0010 Nicotiana tabacum HOM05D001944 ORTHO05D002405 3.1e-07 61.2 80 40.0
Sopen10g005720 Solanum pennellii HOM05D001944 ORTHO05D002405 4.0e-07 60.8 202 27.2
MSTRG.12332 Avicennia marina HOM05D001944 ORTHO05D002405 5.2e-07 60.5 229 29.7
CANSAT54G1673 Cannabis sativa HOM05D001944 ORTHO05D002405 5.2e-07 60.5 179 28.5
Nitab4.5_0000602g0020 Nicotiana tabacum HOM05D001944 ORTHO05D002405 1.2e-06 59.3 277 29.6
MSTRG.18675 Avicennia marina HOM05D001944 ORTHO05D002405 2.6e-06 58.2 230 30.0
Psat0s578g0240 Pisum sativum HOM05D001944 ORTHO05D011318 2.6e-06 58.2 67 55.2
Cc06_g04010 Coffea canephora HOM05D001944 ORTHO05D002405 3.4e-06 57.8 181 30.9
Lj1A201T36 Lonicera japonica HOM05D001944 ORTHO05D002405 3.4e-06 57.8 138 31.9
Psat0s578g0160 Pisum sativum HOM05D001944 ORTHO05D011318 3.4e-06 57.8 67 53.7
HPP92_003456 Vanilla planifolia HOM05D041147 ORTHO05D017225 4.4e-06 57.4 126 31.0
Actinidia19662 Actinidia chinensis HOM05D001944 ORTHO05D002405 5.8e-06 57.0 62 48.4
SalBow3G2448 Salvia bowleyana HOM05D001944 ORTHO05D002405 7.5e-06 56.6 149 31.5


User provided reference genes

Program Settings