Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_19255_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 1.2e-68 263.1 139 100.0
TPR.G15560 Trifolium pratense HOM05D005728 ORTHO05D005733 9.5e-45 183.7 137 71.5
Medtr4g059310 Medicago truncatula HOM05D005728 ORTHO05D005733 4.7e-44 181.4 142 73.2
Psat7g225080 Pisum sativum HOM05D005728 ORTHO05D005733 1.8e-43 179.5 143 71.3
Glyma.12G067500 Glycine max HOM05D005728 ORTHO05D005733 1.4e-40 169.9 142 69.0
Phvul.011G079200 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 4.1e-40 168.3 138 68.1
Glyma.11G146600 Glycine max HOM05D005728 ORTHO05D005733 3.5e-39 165.2 142 67.6
VMungo0403G0001 Vigna mungo HOM05D005728 ORTHO05D005733 3.6e-36 155.2 138 63.8
arahy.Tifrunner.gnm1.ann1.X5FS8C Arachis hypogaea HOM05D005728 ORTHO05D005733 2.3e-35 152.5 140 67.1
Lj3g0009869 Lotus japonicus HOM05D005728 ORTHO05D005733 1.2e-34 150.2 139 63.3
Lalb_Chr19g0137271 Lupinus albus HOM05D005728 ORTHO05D005733 1.3e-33 146.7 138 61.6
Glyma.12G172600 Glycine max HOM05D005728 ORTHO05D005733 1.1e-32 143.7 136 62.5
Phvul.005G135400 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 5.4e-32 141.4 136 60.3
QL01p022229 Quercus lobata HOM05D005728 ORTHO05D005733 3.9e-30 135.2 132 56.8
Glyma.13G326000 Glycine max HOM05D005728 ORTHO05D005733 2.8e-28 129.0 135 57.8
Lalb_Chr14g0374671 Lupinus albus HOM05D005728 ORTHO05D005733 5.2e-27 124.8 142 54.9
VMungo1080G1182 Vigna mungo HOM05D005728 ORTHO05D005733 5.2e-27 124.8 143 52.4
Ciclev10029550m.g Citrus clementina HOM05D005728 ORTHO05D005733 4.4e-26 121.7 135 53.3
Psat5g279440 Pisum sativum HOM05D005728 ORTHO05D005733 4.4e-26 121.7 125 54.4
Thecc.09G340800 Theobroma cacao HOM05D005728 ORTHO05D005733 5.8e-26 121.3 142 49.3
Duzib150G0774 Durio zibethinus HOM05D005728 ORTHO05D005733 9.9e-26 120.6 134 54.5
CiPaw.13G113100 Carya illinoinensis HOM05D005728 ORTHO05D005733 1.7e-25 119.8 133 51.9
MD03G1117800 Malus domestica HOM05D005728 ORTHO05D005733 6.4e-25 117.9 121 52.1
FAN21G3175 Fragaria x ananassa HOM05D005728 ORTHO05D005733 1.4e-24 116.7 132 54.5
RcHm_v2.0_Chr5g0059071 Rosa chinensis HOM05D005728 ORTHO05D005733 1.4e-24 116.7 130 53.1
FvH4_3g32270 Fragaria vesca HOM05D005728 ORTHO05D005733 1.9e-24 116.3 130 53.1
FAN11G0683 Fragaria x ananassa HOM05D005728 ORTHO05D005733 1.9e-24 116.3 130 53.1
Gohir.A05G103100 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.9e-24 116.3 142 50.0
Duzib168G0076 Durio zibethinus HOM05D005728 ORTHO05D005733 2.4e-24 115.9 135 51.1
Gorai.009G107100 Gossypium raimondii HOM05D005728 ORTHO05D005733 2.4e-24 115.9 142 50.0
FAN16G2914 Fragaria x ananassa HOM05D005728 ORTHO05D005733 3.2e-24 115.5 130 53.1
Gohir.D05G102800 Gossypium hirsutum HOM05D005728 ORTHO05D005733 3.2e-24 115.5 142 49.3
Medtr2g094210 Medicago truncatula HOM05D005728 ORTHO05D005733 7.1e-24 114.4 134 53.7
Ca_01413_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 9.2e-24 114.0 124 53.2
FAN25G2087 Fragaria x ananassa HOM05D005728 ORTHO05D005733 9.2e-24 114.0 130 53.1
TPR.G11537 Trifolium pratense HOM05D005728 ORTHO05D005733 9.2e-24 114.0 140 51.4
Haze_23825 Corylus avellana HOM05D005728 ORTHO05D005733 1.2e-23 113.6 139 49.6
MELO3C020692.2 Cucumis melo HOM05D005728 ORTHO05D005733 7.8e-23 110.9 137 51.1
Hma1.2p1_0058F.1_g032530 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 7.8e-23 110.9 127 51.2
Potri.004G211000 Populus trichocarpa HOM05D005728 ORTHO05D005733 7.8e-23 110.9 134 46.3
Prupe.6G101500 Prunus persica HOM05D005728 ORTHO05D005733 7.8e-23 110.9 130 50.0
Sed0004216 Sechium edule HOM05D005728 ORTHO05D005733 7.8e-23 110.9 130 53.1
ECA248G1213 Erigeron canadensis HOM05D005728 ORTHO05D005733 2.3e-22 109.4 121 51.2
Potri.009G013800 Populus trichocarpa HOM05D005728 ORTHO05D005733 6.6e-22 107.8 145 49.7
CSS0032457 Camellia sinensis var. sinensis HOM05D005728 ORTHO05D005733 8.6e-22 107.5 133 49.6
Sabra04G0142500 Salix brachista HOM05D005728 ORTHO05D005733 1.1e-21 107.1 135 44.4
Gorai.004G228900 Gossypium raimondii HOM05D005728 ORTHO05D005733 1.9e-21 106.3 136 47.8
Gohir.A08G197900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 2.5e-21 105.9 136 48.5
Gohir.D08G215300 Gossypium hirsutum HOM05D005728 ORTHO05D005733 2.5e-21 105.9 128 50.8
Eucgr.B02498 Eucalyptus grandis HOM05D005728 ORTHO05D005733 4.3e-21 105.1 132 47.7
HanXRQChr01g0016901 Helianthus annuus HOM05D005728 ORTHO05D005733 4.3e-21 105.1 132 47.0
TWI31G0058 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 4.3e-21 105.1 135 48.9
Cfa011317 Carpinus fangiana HOM05D005728 ORTHO05D005733 5.6e-21 104.8 139 47.5
Sed0003209 Sechium edule HOM05D005728 ORTHO05D005733 7.3e-21 104.4 129 45.0
TAR629G0455 Trochodendron aralioides HOM05D005728 ORTHO05D005733 7.3e-21 104.4 136 44.1
Atru.chr3.3629 Acer truncatum HOM05D005728 ORTHO05D005733 9.6e-21 104.0 145 44.1
PGR102G3095 Punica granatum HOM05D005728 ORTHO05D005733 1.6e-20 103.2 126 46.8
Rhsim01G0216600 Rhododendron simsii HOM05D005728 ORTHO05D005733 2.1e-20 102.8 134 46.3
Lsat_1_v5_gn_1_65300 Lactuca sativa HOM05D005728 ORTHO05D005733 2.8e-20 102.4 122 46.7
CsaV3_1G033730 Cucumis sativus L. HOM05D005728 ORTHO05D005733 8.1e-20 100.9 137 48.9
Lj3g0014252 Lotus japonicus HOM05D005728 ORTHO05D005733 1.1e-19 100.5 115 56.5
TWI79G1513 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 3.1e-19 99.0 136 49.3
Ah.01g002910 Amaranthus hybridus HOM05D005728 ORTHO05D005733 4.0e-19 98.6 133 42.9
Manes.04G021300 Manihot esculenta HOM05D005728 ORTHO05D005733 1.5e-18 96.7 124 46.8
MD11G1136100 Malus domestica HOM05D005728 ORTHO05D005733 2.6e-18 95.9 123 48.8
Gohir.D03G134400 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.7e-17 93.2 135 51.1
EL10Ac9g22516 Beta vulgaris HOM05D005728 ORTHO05D005733 4.9e-17 91.7 127 39.4
PSO063G1604 Papaver somniferum HOM05D005728 ORTHO05D005733 4.9e-17 91.7 141 42.6
CANSAT54G0421 Cannabis sativa HOM05D005728 ORTHO05D005733 1.1e-16 90.5 139 45.3
ECA238G1730 Erigeron canadensis HOM05D005728 ORTHO05D005733 1.4e-16 90.1 127 46.5
PSO339G2100 Papaver somniferum HOM05D005728 ORTHO05D005733 1.4e-16 90.1 141 42.6
Gohir.A03G033900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.9e-16 89.7 135 50.4
CiPaw.14G080700 Carya illinoinensis HOM05D005728 ORTHO05D005733 5.4e-16 88.2 112 44.6
AUR62024979 Chenopodium quinoa HOM05D005728 ORTHO05D005733 1.6e-15 86.7 120 41.7
Cc01_g11120 Coffea canephora HOM05D005728 ORTHO05D005733 1.6e-15 86.7 125 40.8
Sabra09G0007800 Salix brachista HOM05D005728 ORTHO05D005733 1.6e-15 86.7 116 45.7
Nn2g10793 Nelumbo nucifera HOM05D005728 ORTHO05D005733 2.1e-15 86.3 134 40.3
Duzib170G0319 Durio zibethinus HOM05D005728 ORTHO05D005733 3.5e-15 85.5 115 47.0
MBI07_g19310_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 3.5e-15 85.5 141 41.1
RhsimUnG0058600 Rhododendron simsii HOM05D005728 ORTHO05D005733 6.0e-15 84.7 97 43.3
Rhsim01G0216400 Rhododendron simsii HOM05D005728 ORTHO05D005733 7.8e-15 84.3 104 43.3
AUR62039639 Chenopodium quinoa HOM05D005728 ORTHO05D005733 1.0e-14 84.0 120 41.7
DCAR_018811 Daucus carota HOM05D005728 ORTHO05D005733 1.7e-14 83.2 133 40.6
Aqoxy1G01237 Aquilegia oxysepala HOM05D005728 ORTHO05D005733 2.3e-14 82.8 132 34.8
THA.LOC104800607 Tarenaya hassleriana HOM05D005728 ORTHO05D005733 2.3e-14 82.8 124 42.7
arahy.Tifrunner.gnm1.ann1.C3ZM5V Arachis hypogaea HOM05D005728 ORTHO05D005733 5.1e-14 81.6 89 53.9
Peaxi162Scf00270g00082 Petunia axillaris HOM05D005728 ORTHO05D005733 6.6e-14 81.3 136 39.0
Ah.01g014340 Amaranthus hybridus HOM05D005728 ORTHO05D005733 8.7e-14 80.9 123 43.1
Cpa.g.sc216.7 Carica papaya HOM05D005728 ORTHO05D005733 8.7e-14 80.9 121 39.7
Nitab4.5_0012712g0010 Nicotiana tabacum HOM05D005728 ORTHO05D005733 2.5e-13 79.3 129 41.9
Sc15g0002200 Simmondsia chinensis HOM05D005728 ORTHO05D005733 3.3e-13 79.0 129 37.2
Oeu059090.1 Olea europaea HOM05D005728 ORTHO05D005733 7.3e-13 77.8 123 38.2
arahy.Tifrunner.gnm1.ann1.5L1A31 Arachis hypogaea HOM05D005728 ORTHO05D005733 1.3e-12 77.0 135 37.8
Nitab4.5_0000650g0250 Nicotiana tabacum HOM05D005728 ORTHO05D005733 2.1e-12 76.3 129 40.3
PGSC0003DMG400008077 Solanum tuberosum HOM05D005728 ORTHO05D005733 2.1e-12 76.3 128 35.9
Sopen11g028140 Solanum pennellii HOM05D005728 ORTHO05D005733 1.8e-11 73.2 128 33.6
Solyc11g069420.2 Solanum lycopersicum HOM05D005728 ORTHO05D005733 2.4e-11 72.8 128 33.6
BcaB06g28212 Brassica carinata HOM05D005728 ORTHO05D005733 5.3e-11 71.6 108 42.6
Carub.0004s0935 Capsella rubella HOM05D005728 ORTHO05D005733 6.9e-11 71.2 111 43.2
Thhalv10017443m.g Eutrema salsugineum HOM05D005728 ORTHO05D005733 9.0e-11 70.9 109 45.9
Hma1.2p1_2468F.1_g322665 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 9.0e-11 70.9 111 41.4
Sp4g11230 Schrenkiella parvula HOM05D005728 ORTHO05D005733 9.0e-11 70.9 115 40.0
Aa31LG5G7800 Aethionema arabicum HOM05D005728 ORTHO05D005733 1.5e-10 70.1 104 42.3
A07p18980 Brassica napus HOM05D005728 ORTHO05D005733 1.5e-10 70.1 108 40.7
BraA07t29603Z Brassica rapa HOM05D005728 ORTHO05D005733 1.5e-10 70.1 108 40.7
C04p22970 Brassica napus HOM05D005728 ORTHO05D005733 2.6e-10 69.3 111 44.1
Hma1.2p1_0055F.1_g031560 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 4.4e-10 68.6 111 40.5
MBI10_g13404_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 5.8e-10 68.2 137 35.0
A04p21550 Brassica napus HOM05D005728 ORTHO05D005733 1.3e-09 67.0 108 39.8
BolC4t23791H Brassica oleracea HOM05D005728 ORTHO05D005733 1.3e-09 67.0 111 43.2
BraA04t17719Z Brassica rapa HOM05D005728 ORTHO05D005733 1.3e-09 67.0 108 39.8
MSTRG.17803 Avicennia marina HOM05D005728 ORTHO05D005733 2.2e-09 66.2 119 42.9
AL4G21610 Arabidopsis lyrata HOM05D005728 ORTHO05D005733 2.9e-09 65.9 110 42.7
BcaC02g08173 Brassica carinata HOM05D005728 ORTHO05D005733 6.4e-09 64.7 108 39.8
C04p57650 Brassica napus HOM05D005728 ORTHO05D005733 6.4e-09 64.7 108 39.8
BolC4t27283H Brassica oleracea HOM05D005728 ORTHO05D005733 8.4e-09 64.3 108 38.9
CARHR121360 Cardamine hirsuta HOM05D005728 ORTHO05D005733 1.1e-08 63.9 110 43.6
SGA_v2.0_scaffold2G00890 Striga asiatica HOM05D005728 ORTHO05D005733 1.1e-08 63.9 130 33.8
Manes.11G145200 Manihot esculenta HOM05D005728 ORTHO05D005733 1.4e-08 63.5 114 42.1
AT2G28410 Arabidopsis thaliana HOM05D005728 ORTHO05D005733 2.4e-08 62.8 111 40.5
SalBow3G4069 Salvia bowleyana HOM05D005728 ORTHO05D005733 5.4e-08 61.6 123 37.4
A03p11060 Brassica napus HOM05D010860 ORTHO05D005733 2.1e-07 59.7 143 33.6
BraA03t10420Z Brassica rapa HOM05D010860 ORTHO05D005733 2.1e-07 59.7 143 33.6
Migut.N02604 Erythranthe guttata HOM05D005728 ORTHO05D005733 2.1e-07 59.7 121 35.5
Nitab4.5_0000106g0140 Nicotiana tabacum HOM05D005728 ORTHO05D005733 2.1e-07 59.7 130 35.4
Gorai.003G141500 Gossypium raimondii HOM05D005728 ORTHO05D005733 1.7e-06 56.6 108 45.4
Thhalv10014945m.g Eutrema salsugineum HOM05D010860 ORTHO05D005733 2.3e-06 56.2 136 33.1
ATR0048G010 Amborella trichopoda HOM05D005728 ORTHO05D005733 3.0e-06 55.8 128 35.9
BcaB08g36363 Brassica carinata HOM05D010860 ORTHO05D005733 3.0e-06 55.8 144 33.3


User provided reference genes

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