Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_19225_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 1.5e-165 586.3 326 100.0
Ca_12761_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 1.1e-59 234.6 121 95.0
Psat6g035200 Pisum sativum HOM05D004583 ORTHO05D005469 2.7e-58 229.9 177 75.1
TPR.G24505 Trifolium pratense HOM05D004583 ORTHO05D005469 3.3e-56 223.0 176 73.3
Medtr1g007160 Medicago truncatula HOM05D004583 ORTHO05D005469 3.7e-55 219.5 183 72.1
arahy.Tifrunner.gnm1.ann1.R6LPAT Arachis hypogaea HOM05D004583 ORTHO05D005469 7.1e-51 205.3 177 65.0
arahy.Tifrunner.gnm1.ann1.6GB5J4 Arachis hypogaea HOM05D004583 ORTHO05D005469 1.0e-49 201.4 174 64.4
Lalb_Chr22g0361041 Lupinus albus HOM05D004583 ORTHO05D005469 1.1e-46 191.4 174 64.4
Potri.018G046700 Populus trichocarpa HOM05D004583 ORTHO05D005469 9.0e-46 188.3 169 60.4
Lj4g0027824 Lotus japonicus HOM05D004583 ORTHO05D005469 3.4e-45 186.4 141 68.8
Prupe.1G445300 Prunus persica HOM05D004583 ORTHO05D005469 3.4e-45 186.4 167 61.7
QL12p041048 Quercus lobata HOM05D004583 ORTHO05D005469 2.2e-44 183.7 166 60.8
Sabra18G0045300 Salix brachista HOM05D004583 ORTHO05D005469 6.5e-44 182.2 169 58.6
Dinv23388 Davidia involucrata HOM05D004583 ORTHO05D005469 4.2e-43 179.5 166 58.4
Ciclev10007949m.g Citrus clementina HOM05D004583 ORTHO05D005469 7.2e-43 178.7 166 59.6
Lj1g0018877 Lotus japonicus HOM05D004583 ORTHO05D005469 1.2e-42 177.9 178 57.9
Cfa013385 Carpinus fangiana HOM05D004583 ORTHO05D005469 2.7e-42 176.8 167 58.7
Haze_21912 Corylus avellana HOM05D004583 ORTHO05D005469 3.6e-42 176.4 163 60.1
Nn6g35316 Nelumbo nucifera HOM05D004583 ORTHO05D005469 3.6e-42 176.4 167 58.1
HanXRQChr11g0352321 Helianthus annuus HOM05D004583 ORTHO05D005469 6.1e-42 175.6 171 55.6
Hma1.2p1_0049F.1_g028360 Hydrangea macrophylla HOM05D004583 ORTHO05D005469 1.4e-41 174.5 167 61.7
CSS0042231 Camellia sinensis var. sinensis HOM05D004583 ORTHO05D005469 1.8e-41 174.1 169 54.4
TWI63G0012 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 1.8e-41 174.1 167 58.1
CiPaw.08G027000 Carya illinoinensis HOM05D004583 ORTHO05D005469 2.3e-41 173.7 168 57.7
Lsat_1_v5_gn_1_42160 Lactuca sativa HOM05D004583 ORTHO05D005469 3.0e-41 173.3 170 54.7
CANSAT25G3668 Cannabis sativa HOM05D004583 ORTHO05D005469 5.1e-41 172.6 167 56.9
CiPaw.07G202200 Carya illinoinensis HOM05D004583 ORTHO05D005469 5.1e-41 172.6 168 57.1
MD15G1090900 Malus domestica HOM05D004583 ORTHO05D005469 1.5e-40 171.0 165 57.0
Cc08_g09870 Coffea canephora HOM05D004583 ORTHO05D005469 1.9e-40 170.6 169 56.2
Sc09g0009440 Simmondsia chinensis HOM05D004583 ORTHO05D005469 1.9e-40 170.6 164 57.9
GSVIVG01035292001 Vitis vinifera HOM05D004583 ORTHO05D005469 3.3e-40 169.9 163 57.1
AUR62009234 Chenopodium quinoa HOM05D004583 ORTHO05D005469 7.4e-40 168.7 190 50.5
Phvul.009G111600 Phaseolus vulgaris HOM05D004583 ORTHO05D005469 7.4e-40 168.7 180 54.4
VMungo1309G0941 Vigna mungo HOM05D004583 ORTHO05D005469 1.3e-39 167.9 180 54.4
ClCG08G012110 Citrullus lanatus HOM05D004583 ORTHO05D005469 1.7e-39 167.5 168 57.1
FAN15G2845 Fragaria x ananassa HOM05D004583 ORTHO05D005469 2.8e-39 166.8 165 56.4
CsaV3_2G030710 Cucumis sativus L. HOM05D004583 ORTHO05D005469 4.8e-39 166.0 168 58.9
RcHm_v2.0_Chr6g0306601 Rosa chinensis HOM05D004583 ORTHO05D005469 4.8e-39 166.0 167 59.3
DCAR_004462 Daucus carota HOM05D004583 ORTHO05D005469 6.3e-39 165.6 161 57.8
Manes.16G073800 Manihot esculenta HOM05D004583 ORTHO05D005469 1.1e-38 164.9 168 53.0
MD08G1111400 Malus domestica HOM05D004583 ORTHO05D005469 1.4e-38 164.5 167 53.9
Sed0024833 Sechium edule HOM05D004583 ORTHO05D005469 1.4e-38 164.5 164 57.3
Hund03382 Selenicereus undatus HOM05D004583 ORTHO05D005469 1.4e-38 164.5 162 53.1
Eucgr.C00611 Eucalyptus grandis HOM05D004583 ORTHO05D005469 2.4e-38 163.7 173 54.9
ECA248G2390 Erigeron canadensis HOM05D004583 ORTHO05D005469 3.1e-38 163.3 164 57.9
FvH4_2g35320 Fragaria vesca HOM05D004583 ORTHO05D005469 3.1e-38 163.3 166 57.2
FAN20G1421 Fragaria x ananassa HOM05D004583 ORTHO05D005469 3.1e-38 163.3 166 57.2
MELO3C011128.2 Cucumis melo HOM05D004583 ORTHO05D005469 5.3e-38 162.5 168 57.7
SHI18791 Sapria himalayana HOM05D004583 ORTHO05D005469 5.3e-38 162.5 171 52.0
Nitab4.5_0001737g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 3.4e-37 159.8 164 54.9
Thecc.09G047500 Theobroma cacao HOM05D004583 ORTHO05D005469 5.9e-37 159.1 160 57.5
Thhalv10001956m.g Eutrema salsugineum HOM05D004583 ORTHO05D005469 7.7e-37 158.7 173 53.8
FAN27G2572 Fragaria x ananassa HOM05D004583 ORTHO05D005469 7.7e-37 158.7 165 57.0
BcaB08g35216 Brassica carinata HOM05D004583 ORTHO05D005469 1.0e-36 158.3 175 53.1
Solyc12g095840.2 Solanum lycopersicum HOM05D004583 ORTHO05D005469 1.0e-36 158.3 166 54.8
Sopen12g031740 Solanum pennellii HOM05D004583 ORTHO05D005469 1.0e-36 158.3 166 54.8
Actinidia15745 Actinidia chinensis HOM05D004583 ORTHO05D005469 1.3e-36 157.9 169 52.7
TAR636G0454 Trochodendron aralioides HOM05D004583 ORTHO05D005469 1.3e-36 157.9 163 52.1
PGR031G0432 Punica granatum HOM05D004583 ORTHO05D005469 1.7e-36 157.5 177 52.0
Ah.10g034890 Amaranthus hybridus HOM05D004583 ORTHO05D005469 3.8e-36 156.4 180 48.9
AUR62041963 Chenopodium quinoa HOM05D004583 ORTHO05D005469 3.8e-36 156.4 203 45.8
Psat5g020600 Pisum sativum HOM05D004583 ORTHO05D005469 3.8e-36 156.4 114 69.3
BcaC07g40848 Brassica carinata HOM05D004583 ORTHO05D005469 5.0e-36 156.0 178 51.7
C08p38460 Brassica napus HOM05D004583 ORTHO05D005469 5.0e-36 156.0 178 51.7
Gohir.D07G025000 Gossypium hirsutum HOM05D004583 ORTHO05D005469 5.0e-36 156.0 163 55.8
PSO210G3632 Papaver somniferum HOM05D004583 ORTHO05D005469 5.0e-36 156.0 165 49.7
TWI34G1497 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 5.0e-36 156.0 134 61.2
Gohir.A07G022241 Gossypium hirsutum HOM05D004583 ORTHO05D005469 8.5e-36 155.2 163 54.6
BolC8t51418H Brassica oleracea HOM05D004583 ORTHO05D005469 1.1e-35 154.8 177 50.8
Nitab4.5_0001309g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 1.1e-35 154.8 170 52.9
PSO210G2011 Papaver somniferum HOM05D004583 ORTHO05D005469 1.4e-35 154.5 165 49.1
Potri.006G236400 Populus trichocarpa HOM05D004583 ORTHO05D005469 1.4e-35 154.5 169 52.7
TPR.G12398 Trifolium pratense HOM05D004583 ORTHO05D005469 1.9e-35 154.1 181 50.8
Gorai.001G026100 Gossypium raimondii HOM05D004583 ORTHO05D005469 4.2e-35 152.9 163 54.6
Lalb_Chr23g0269711 Lupinus albus HOM05D004583 ORTHO05D005469 4.2e-35 152.9 114 67.5
AL4G17420 Arabidopsis lyrata HOM05D004583 ORTHO05D005469 5.5e-35 152.5 175 52.0
Sp4g05420 Schrenkiella parvula HOM05D004583 ORTHO05D005469 5.5e-35 152.5 174 52.9
ATR0705G143 Amborella trichopoda HOM05D004583 ORTHO05D005469 9.4e-35 151.8 165 52.1
AT2G25740 Arabidopsis thaliana HOM05D004583 ORTHO05D005469 1.2e-34 151.4 176 51.7
AUR62041959 Chenopodium quinoa HOM05D004583 ORTHO05D005469 2.1e-34 150.6 225 40.9
A09p55470 Brassica napus HOM05D004583 ORTHO05D005469 2.7e-34 150.2 176 52.8
BraA09t40949Z Brassica rapa HOM05D004583 ORTHO05D005469 2.7e-34 150.2 176 52.8
Ca_15574_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 2.7e-34 150.2 169 51.5
Rhsim02G0175400 Rhododendron simsii HOM05D004583 ORTHO05D005469 3.6e-34 149.8 166 51.2
arahy.Tifrunner.gnm1.ann1.AK4U3Y Arachis hypogaea HOM05D004583 ORTHO05D005469 7.9e-34 148.7 115 67.0
arahy.Tifrunner.gnm1.ann1.M0YYQ7 Arachis hypogaea HOM05D004583 ORTHO05D005469 1.0e-33 148.3 115 67.0
COL.COLO4_20995 Corchorus olitorius HOM05D004583 ORTHO05D005469 1.0e-33 148.3 161 52.2
Peaxi162Scf00064g01528 Petunia axillaris HOM05D004583 ORTHO05D005469 1.0e-33 148.3 170 54.1
Rhsim02G0175600 Rhododendron simsii HOM05D004583 ORTHO05D005469 1.4e-33 147.9 152 53.9
Medtr3g110340 Medicago truncatula HOM05D004583 ORTHO05D005469 1.8e-33 147.5 175 52.0
EL10Ac2g03985 Beta vulgaris HOM05D004583 ORTHO05D005469 2.3e-33 147.1 167 50.9
BcaC01g04904 Brassica carinata HOM05D004583 ORTHO05D005469 3.9e-33 146.4 173 51.4
C03p32470 Brassica napus HOM05D004583 ORTHO05D005469 3.9e-33 146.4 173 51.4
Aa31LG5G9840 Aethionema arabicum HOM05D004583 ORTHO05D005469 5.1e-33 146.0 172 51.2
BolC3t15588H Brassica oleracea HOM05D004583 ORTHO05D005469 5.1e-33 146.0 173 51.4
THA.LOC104803803 Tarenaya hassleriana HOM05D004583 ORTHO05D005469 6.7e-33 145.6 171 52.6
BraA03t11919Z Brassica rapa HOM05D004583 ORTHO05D005469 8.8e-33 145.2 174 51.7
Carub.0004s0553 Capsella rubella HOM05D004583 ORTHO05D005469 1.5e-32 144.4 178 50.0
Sabra06G0184800 Salix brachista HOM05D004583 ORTHO05D005469 1.5e-32 144.4 169 49.7
A03p27060 Brassica napus HOM05D004583 ORTHO05D005469 2.0e-32 144.1 174 51.1
CAN.G208.65 Capsicum annuum HOM05D004583 ORTHO05D005469 2.0e-32 144.1 142 55.6
TAR624G1263 Trochodendron aralioides HOM05D004583 ORTHO05D005469 2.0e-32 144.1 163 47.2
Actinidia14686 Actinidia chinensis HOM05D004583 ORTHO05D005469 2.6e-32 143.7 136 56.6
CDE02G3504 Ceratophyllum demersum HOM05D004583 ORTHO05D005469 2.6e-32 143.7 163 49.7
Migut.E01537 Erythranthe guttata HOM05D004583 ORTHO05D005469 1.7e-31 141.0 174 48.9
Lj7C698G10 Lonicera japonica HOM05D004583 ORTHO05D005469 2.8e-31 140.2 115 61.7
Os05g0521500 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 6.3e-31 139.0 163 48.5
unitig_32.g11475 Utricularia gibba HOM05D004583 ORTHO05D005469 2.4e-30 137.1 160 50.0
Duzib168G1134 Durio zibethinus HOM05D004583 ORTHO05D005469 5.3e-30 136.0 130 56.2
Atru.chr7.2058 Acer truncatum HOM05D004583 ORTHO05D005469 3.4e-29 133.3 167 50.3
SalBow1G6079 Salvia bowleyana HOM05D004583 ORTHO05D005469 5.9e-29 132.5 175 52.0
SGA_v2.0_scaffold169G38659 Striga asiatica HOM05D004583 ORTHO05D005469 7.7e-29 132.1 163 50.9
MBI04_g20300_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 2.2e-28 130.6 162 46.3
Oeu038813.1 Olea europaea HOM05D004583 ORTHO05D005469 2.2e-28 130.6 169 50.3
Glyma.06G087900 Glycine max HOM05D004583 ORTHO05D005469 3.8e-28 129.8 171 45.6
MBI04_g42480_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 8.5e-28 128.6 159 46.5
Zm00001eb293710 Zea mays HOM05D004583 ORTHO05D005469 3.2e-27 126.7 171 45.0
Aqoxy7G03869 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 7.2e-27 125.6 177 46.9
MSTRG.14029 Avicennia marina HOM05D004583 ORTHO05D005469 2.1e-26 124.0 167 46.1
CARHR115490 Cardamine hirsuta HOM05D004583 ORTHO05D005469 4.7e-26 122.9 114 57.0
CANSAT35G1178 Cannabis sativa HOM05D004583 ORTHO05D005469 1.4e-25 121.3 180 50.0
Os01g0743600 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 3.0e-25 120.2 164 46.3
SEGI_02523 Sequoiadendron giganteum HOM05D004583 ORTHO05D005469 3.3e-24 116.7 118 51.7
Zm00001eb153580 Zea mays HOM05D004583 ORTHO05D005469 4.8e-23 112.8 175 45.1
Pp3c5_21890 Physcomitrium patens HOM05D004583 ORTHO05D005469 7.0e-22 109.0 159 40.3
Pp3c5_21897 Physcomitrium patens HOM05D004583 ORTHO05D005469 7.0e-22 109.0 159 40.3
Glyma.04G086400 Glycine max HOM05D004583 ORTHO05D005469 9.1e-22 108.6 84 69.0
Mapoly0168s0005 Marchantia polymorpha HOM05D004583 ORTHO05D005469 2.0e-21 107.5 119 47.1
Pp3c6_5840 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.0e-21 107.5 159 40.9
DCAR_003076 Daucus carota HOM05D004583 ORTHO05D005469 1.0e-20 105.1 155 41.3
Aqoxy7G01424 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 5.0e-20 102.8 160 39.4
Pp3c15_22980 Physcomitrium patens HOM05D004583 ORTHO05D005469 8.5e-20 102.1 119 44.5
MSTRG.1664 Avicennia marina HOM05D004583 ORTHO05D005469 2.1e-18 97.4 86 60.5
AagrBONN_evm.TU.Sc2ySwM_117.1952 Anthoceros agrestis HOM05D004583 ORTHO05D005469 2.7e-18 97.1 170 39.4
Pp3c9_19040 Physcomitrium patens HOM05D004583 ORTHO05D005469 8.0e-18 95.5 119 42.0
HPP92_022972 Vanilla planifolia HOM05D004583 ORTHO05D005469 1.0e-17 95.1 103 51.5
SMO238G0017 Selaginella moellendorffii HOM05D004583 ORTHO05D005469 7.5e-16 89.0 110 42.7
Ca_12765_v3 Cicer arietinum L. HOM05D002706 ORTHO05D003253 2.4e-14 84.0 52 98.1
CBR_g21950 Chara braunii HOM05D004583 ORTHO05D005469 2.7e-13 80.5 182 35.2
vmacro11048 Vaccinium macrocarpon HOM05D004583 ORTHO05D005469 5.9e-13 79.3 73 56.2
Pp3c27_6400 Physcomitrium patens HOM05D004583 ORTHO05D005469 3.2e-11 73.6 114 43.0
Pp3c16_16060 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.3e-09 67.4 114 41.2
Cpa.g.c46051 Carica papaya HOM05D004583 ORTHO05D005469 5.7e-08 62.8 39 66.7
arahy.Tifrunner.gnm1.ann1.E99XLH Arachis hypogaea HOM05D002152 ORTHO05D031610 9.8e-08 62.0 47 57.4
arahy.Tifrunner.gnm1.ann1.YJBK1K Arachis hypogaea HOM05D004583 ORTHO05D005469 6.3e-07 59.3 47 55.3
Cre13.g585651 Chlamydomonas reinhardtii HOM05D004583 ORTHO05D005469 4.1e-06 56.6 62 50.0


User provided reference genes

Program Settings