Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_19224_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 3.0e-145 518.5 258 100.0
Psat6g035160 Pisum sativum HOM05D005388 ORTHO05D006281 3.5e-117 425.2 257 82.5
TPR.G17170 Trifolium pratense HOM05D005388 ORTHO05D006281 1.0e-113 413.7 257 82.5
VMungo1383G1280 Vigna mungo HOM05D005388 ORTHO05D006281 1.5e-107 393.3 259 76.4
Phvul.001G115300 Phaseolus vulgaris HOM05D005388 ORTHO05D006281 1.9e-107 392.9 259 76.4
Glyma.19G115900 Glycine max HOM05D005388 ORTHO05D006281 5.6e-107 391.3 259 76.1
Lj1g0004963 Lotus japonicus HOM05D005388 ORTHO05D006281 1.2e-106 390.2 259 76.8
Glyma.16G037200 Glycine max HOM05D005388 ORTHO05D006281 3.6e-106 388.7 265 74.7
Lalb_Chr22g0358501 Lupinus albus HOM05D005388 ORTHO05D006281 6.8e-105 384.4 251 76.1
Medtr1g007170 Medicago truncatula HOM05D005388 ORTHO05D006281 6.8e-105 384.4 260 76.5
arahy.Tifrunner.gnm1.ann1.506A6S Arachis hypogaea HOM05D005388 ORTHO05D006281 2.5e-99 365.9 248 71.8
arahy.Tifrunner.gnm1.ann1.KLAQ17 Arachis hypogaea HOM05D005388 ORTHO05D006281 7.3e-99 364.4 247 72.5
arahy.Tifrunner.gnm1.ann1.UC4N4Q Arachis hypogaea HOM05D005388 ORTHO05D006281 1.4e-97 360.1 248 71.0
TPR.G24522 Trifolium pratense HOM05D005388 ORTHO05D006281 7.5e-96 354.4 213 82.6
FAN18G3073 Fragaria x ananassa HOM05D005388 ORTHO05D006281 3.5e-93 345.5 246 69.9
Prupe.4G012000 Prunus persica HOM05D005388 ORTHO05D006281 6.0e-93 344.7 248 68.1
GSVIVG01004448001 Vitis vinifera HOM05D005388 ORTHO05D006281 7.8e-93 344.4 249 70.3
QL03p029835 Quercus lobata HOM05D005388 ORTHO05D006281 1.0e-92 344.0 229 73.4
QL10p003604 Quercus lobata HOM05D005388 ORTHO05D006281 1.7e-92 343.2 229 73.4
CiPaw.09G101500 Carya illinoinensis HOM05D005388 ORTHO05D006281 2.3e-92 342.8 249 69.9
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 2.3e-92 342.8 246 69.1
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 5.1e-92 341.7 246 68.7
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 6.6e-92 341.3 244 69.3
RcHm_v2.0_Chr7g0213451 Rosa chinensis HOM05D005388 ORTHO05D006281 6.6e-92 341.3 248 68.5
Duzib160G0783 Durio zibethinus HOM05D005388 ORTHO05D006281 1.9e-91 339.7 219 75.8
MD10G1330400 Malus domestica HOM05D005388 ORTHO05D006281 7.3e-91 337.8 251 68.5
Thecc.06G231900 Theobroma cacao HOM05D005388 ORTHO05D006281 9.5e-91 337.4 262 66.8
Gohir.A06G152900 Gossypium hirsutum HOM05D005388 ORTHO05D006281 1.6e-90 336.7 219 74.4
Dinv13961 Davidia involucrata HOM05D005388 ORTHO05D006281 2.1e-90 336.3 257 67.3
FAN04G2939 Fragaria x ananassa HOM05D005388 ORTHO05D006281 2.8e-90 335.9 252 67.1
Ciclev10016118m.g Citrus clementina HOM05D005388 ORTHO05D006281 3.6e-90 335.5 249 69.1
PSO339G1452 Papaver somniferum HOM05D005388 ORTHO05D006281 3.6e-90 335.5 219 73.5
Sabra16G0117800 Salix brachista HOM05D005388 ORTHO05D006281 6.2e-90 334.7 218 72.9
Gohir.D06G159300 Gossypium hirsutum HOM05D005388 ORTHO05D006281 1.1e-89 334.0 249 67.9
Gorai.010G186000 Gossypium raimondii HOM05D005388 ORTHO05D006281 1.1e-89 334.0 249 67.9
Sed0023635 Sechium edule HOM05D005388 ORTHO05D006281 1.1e-89 334.0 218 74.3
Actinidia02320 Actinidia chinensis HOM05D005388 ORTHO05D006281 4.0e-89 332.0 247 66.0
Manes.03G134302 Manihot esculenta HOM05D005388 ORTHO05D006281 5.2e-89 331.6 219 73.1
CANSAT56G1966 Cannabis sativa HOM05D005388 ORTHO05D006281 8.9e-89 330.9 246 66.3
Atru.chr1.2476 Acer truncatum HOM05D005388 ORTHO05D006281 1.2e-88 330.5 220 73.6
CSS0028564 Camellia sinensis var. sinensis HOM05D005388 ORTHO05D006281 1.5e-88 330.1 219 72.1
Potri.012G107500 Populus trichocarpa HOM05D005388 ORTHO05D006281 2.0e-88 329.7 241 68.0
COL.COLO4_31868 Corchorus olitorius HOM05D005388 ORTHO05D006281 5.8e-88 328.2 219 73.5
PSO384G2339 Papaver somniferum HOM05D005388 ORTHO05D006281 7.6e-88 327.8 219 72.1
CsaV3_7G034450 Cucumis sativus L. HOM05D005388 ORTHO05D006281 9.9e-88 327.4 219 70.8
Hma1.2p1_0660F.1_g197565 Hydrangea macrophylla HOM05D005388 ORTHO05D006281 9.9e-88 327.4 248 66.9
Nitab4.5_0000143g0400 Nicotiana tabacum HOM05D005388 ORTHO05D006281 9.9e-88 327.4 219 72.1
PGSC0003DMG400013269 Solanum tuberosum HOM05D005388 ORTHO05D006281 1.3e-87 327.0 219 71.7
Sopen11g006890 Solanum pennellii HOM05D005388 ORTHO05D006281 1.7e-87 326.6 219 71.7
ClCG09G000980 Citrullus lanatus HOM05D005388 ORTHO05D006281 3.7e-87 325.5 246 67.1
MELO3C024353.2 Cucumis melo HOM05D005388 ORTHO05D006281 3.7e-87 325.5 219 70.3
TAR624G0708 Trochodendron aralioides HOM05D005388 ORTHO05D006281 3.7e-87 325.5 246 67.9
Oeu044418.1 Olea europaea HOM05D005388 ORTHO05D006281 6.4e-87 324.7 249 65.5
Solyc11g012100.2 Solanum lycopersicum HOM05D005388 ORTHO05D006281 6.4e-87 324.7 219 71.2
MD03G1153200 Malus domestica HOM05D005388 ORTHO05D006281 1.9e-86 323.2 218 74.3
Eucgr.A00642 Eucalyptus grandis HOM05D005388 ORTHO05D006281 2.4e-86 322.8 229 69.4
vmacro03650 Vaccinium macrocarpon HOM05D005388 ORTHO05D006281 2.4e-86 322.8 219 71.2
Cpa.g.sc89.56 Carica papaya HOM05D005388 ORTHO05D006281 2.1e-85 319.7 217 69.6
AUR62009518 Chenopodium quinoa HOM05D005388 ORTHO05D006281 7.8e-85 317.8 248 64.5
THA.LOC104812711 Tarenaya hassleriana HOM05D005388 ORTHO05D006281 1.3e-84 317.0 219 68.5
AT1G31220 Arabidopsis thaliana HOM05D005388 ORTHO05D006281 1.7e-84 316.6 233 67.4
Thhalv10008369m.g Eutrema salsugineum HOM05D005388 ORTHO05D006281 2.3e-84 316.2 221 69.2
BcaB07g32784 Brassica carinata HOM05D005388 ORTHO05D006281 3.0e-84 315.8 220 70.5
Haze_06907 Corylus avellana HOM05D005388 ORTHO05D006281 3.0e-84 315.8 302 57.6
Aqoxy7G03349 Aquilegia oxysepala HOM05D005388 ORTHO05D006281 3.9e-84 315.5 219 70.8
Cc09_g05060 Coffea canephora HOM05D005388 ORTHO05D006281 3.9e-84 315.5 224 70.1
ATR0561G011 Amborella trichopoda HOM05D005388 ORTHO05D006281 5.1e-84 315.1 228 67.1
AL1G49260 Arabidopsis lyrata HOM05D005388 ORTHO05D006281 6.6e-84 314.7 220 69.5
Os08g0500900 Oryza sativa ssp. japonica HOM05D005388 ORTHO05D006281 6.6e-84 314.7 230 67.8
PGR044G2560 Punica granatum HOM05D005388 ORTHO05D006281 8.6e-84 314.3 219 70.3
Sp1g27030 Schrenkiella parvula HOM05D005388 ORTHO05D006281 8.6e-84 314.3 220 70.0
DCAR_027849 Daucus carota HOM05D005388 ORTHO05D006281 1.1e-83 313.9 218 70.2
CARHR030700 Cardamine hirsuta HOM05D005388 ORTHO05D006281 1.5e-83 313.5 220 70.0
AUR62034770 Chenopodium quinoa HOM05D005388 ORTHO05D006281 1.5e-83 313.5 248 63.7
VMungo0647G0909 Vigna mungo HOM05D005388 ORTHO05D006281 1.5e-83 313.5 257 65.4
Peaxi162Scf00558g00317 Petunia axillaris HOM05D005388 ORTHO05D006281 1.9e-83 313.2 220 69.5
Ca_03362_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 3.3e-83 312.4 165 93.9
Sc04g0003930 Simmondsia chinensis HOM05D005388 ORTHO05D006281 3.3e-83 312.4 224 67.0
Carub.0001s2962 Capsella rubella HOM05D005388 ORTHO05D006281 7.3e-83 311.2 220 70.5
HanXRQChr12g0373991 Helianthus annuus HOM05D005388 ORTHO05D006281 7.3e-83 311.2 219 65.8
HanXRQChr12g0374001 Helianthus annuus HOM05D005388 ORTHO05D006281 7.3e-83 311.2 219 65.8
Cc09_g05080 Coffea canephora HOM05D005388 ORTHO05D006281 9.6e-83 310.8 224 69.2
Migut.M01387 Erythranthe guttata HOM05D005388 ORTHO05D006281 9.6e-83 310.8 255 60.4
vmacro03839 Vaccinium macrocarpon HOM05D005388 ORTHO05D006281 9.6e-83 310.8 246 63.4
AL2G29970 Arabidopsis lyrata HOM05D005388 ORTHO05D006281 1.6e-82 310.1 220 69.1
ECA234G3218 Erigeron canadensis HOM05D005388 ORTHO05D006281 2.1e-82 309.7 219 67.1
Os05g0270800 Oryza sativa ssp. japonica HOM05D005388 ORTHO05D006281 2.1e-82 309.7 230 66.5
BolC5t31778H Brassica oleracea HOM05D005388 ORTHO05D006281 4.7e-82 308.5 244 63.9
MSTRG.16020 Avicennia marina HOM05D005388 ORTHO05D006281 6.2e-82 308.1 219 70.3
A09p35020 Brassica napus HOM05D005388 ORTHO05D006281 8.1e-82 307.8 219 68.0
BraA09t39033Z Brassica rapa HOM05D005388 ORTHO05D006281 1.1e-81 307.4 219 68.0
Lsat_1_v5_gn_5_121860 Lactuca sativa HOM05D005388 ORTHO05D006281 1.8e-81 306.6 251 60.6
BcaC05g27152 Brassica carinata HOM05D005388 ORTHO05D006281 1.2e-80 303.9 244 63.1
C05p30410 Brassica napus HOM05D005388 ORTHO05D006281 1.5e-80 303.5 244 63.1
Zm00001eb082710 Zea mays HOM05D005388 ORTHO05D006281 5.8e-80 301.6 215 68.8
Ah.00g000100 Amaranthus hybridus HOM05D005388 ORTHO05D006281 9.9e-80 300.8 248 62.1
Actinidia26868 Actinidia chinensis HOM05D005388 ORTHO05D006281 2.9e-79 299.3 229 66.4
EL10Ac5g11305 Beta vulgaris HOM05D005388 ORTHO05D006281 8.4e-79 297.7 248 61.7
Aa31LG9G16020 Aethionema arabicum HOM05D005388 ORTHO05D006281 1.4e-78 297.0 219 67.1
Nn1g07342 Nelumbo nucifera HOM05D005388 ORTHO05D006281 2.4e-78 296.2 228 68.0
unitig_37.g12191 Utricularia gibba HOM05D005388 ORTHO05D006281 3.2e-78 295.8 227 66.1
Rhsim04G0089100 Rhododendron simsii HOM05D005388 ORTHO05D006281 8.1e-74 281.2 372 45.2
CDE06G1960 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 1.4e-73 280.4 217 63.1
Haze_05515 Corylus avellana HOM05D005388 ORTHO05D006281 1.3e-71 273.9 243 61.7
CDE04G0494 Ceratophyllum demersum HOM05D005388 ORTHO05D006281 3.8e-71 272.3 249 56.2
Duzib235G1331 Durio zibethinus HOM05D005388 ORTHO05D006281 2.4e-70 269.6 208 67.3
Nitab4.5_0001198g0130 Nicotiana tabacum HOM05D005388 ORTHO05D006281 3.2e-70 269.2 183 72.1
SGA_v2.0_scaffold49G18245 Striga asiatica HOM05D005388 ORTHO05D006281 3.2e-70 269.2 184 69.6
SMO353G0366 Selaginella moellendorffii HOM05D005388 ORTHO05D006281 5.4e-70 268.5 214 62.6
Mapoly0084s0080 Marchantia polymorpha HOM05D005388 ORTHO05D006281 6.6e-68 261.5 211 60.7
Pp3c13_14970 Physcomitrium patens HOM05D005388 ORTHO05D006281 4.3e-67 258.8 218 58.7
HPP92_008146 Vanilla planifolia HOM05D005388 ORTHO05D006281 4.6e-61 238.8 197 62.4
Rhsim04G0088200 Rhododendron simsii HOM05D005388 ORTHO05D006281 3.0e-60 236.1 150 76.0
CBR_g45412 Chara braunii HOM05D005388 ORTHO05D006281 3.3e-59 232.6 208 53.8
SalBow8G2877 Salvia bowleyana HOM05D005388 ORTHO05D006281 4.3e-59 232.3 172 68.0
arahy.Tifrunner.gnm1.ann1.NIL5QZ Arachis hypogaea HOM05D005388 ORTHO05D006281 2.8e-58 229.6 181 62.4
Cre12.g550700 Chlamydomonas reinhardtii HOM05D005388 ORTHO05D006281 3.1e-57 226.1 211 54.0
DCAR_016081 Daucus carota HOM05D005388 ORTHO05D006281 2.5e-54 216.5 139 74.8
TAR629G3434 Trochodendron aralioides HOM05D005388 ORTHO05D006281 9.3e-54 214.5 180 62.8
Hund08510 Selenicereus undatus HOM05D005388 ORTHO05D006281 2.1e-53 213.4 182 58.8
Lj2A262G50 Lonicera japonica HOM05D005388 ORTHO05D006281 6.0e-53 211.8 219 52.1
MCO11G941 Micromonas commoda HOM05D005388 ORTHO05D006281 4.8e-50 202.2 253 44.7
Os08g0501132 Oryza sativa ssp. japonica HOM05D005388 ORTHO05D006281 7.6e-48 194.9 142 65.5
Rhsim04G0092900 Rhododendron simsii HOM05D005388 ORTHO05D006281 3.3e-43 179.5 216 47.2
Haze_13876 Corylus avellana HOM05D005388 ORTHO05D006281 6.9e-33 145.2 95 78.9
PRCOL_00005535 Prasinoderma coloniale HOM05D005388 ORTHO05D006281 1.3e-31 141.0 163 44.8
Hund02539 Selenicereus undatus HOM05D005388 ORTHO05D006281 1.4e-30 137.5 297 33.0
Lsat_1_v5_gn_3_44480 Lactuca sativa HOM05D005388 ORTHO05D006281 2.5e-30 136.7 178 40.4
Migut.H01601 Erythranthe guttata HOM05D005388 ORTHO05D006281 9.4e-30 134.8 193 45.6
AagrBONN_evm.TU.Sc2ySwM_369.550 Anthoceros agrestis HOM05D005388 ORTHO05D006281 2.2e-26 123.6 95 65.3
Pp3s32_101 Physcomitrium patens HOM05D005388 ORTHO05D006281 4.8e-26 122.5 201 40.3
Sc04g0003960 Simmondsia chinensis HOM05D005388 ORTHO05D006281 1.4e-25 120.9 75 76.0
FAN04G2929 Fragaria x ananassa HOM05D001252 ORTHO05D006281 2.2e-23 113.6 106 54.7
FAN11G1084 Fragaria x ananassa HOM05D001252 ORTHO05D006281 2.2e-23 113.6 106 54.7
FAN13G0148 Fragaria x ananassa HOM05D001252 ORTHO05D001263 2.2e-23 113.6 106 54.7
FAN24G1366 Fragaria x ananassa HOM05D001252 ORTHO05D006281 2.2e-23 113.6 106 54.7
FAN11G2435 Fragaria x ananassa HOM05D000566 ORTHO05D000686 3.2e-22 109.8 104 51.9
Rhsim04G0088400 Rhododendron simsii HOM05D005388 ORTHO05D006281 8.0e-21 105.1 107 50.5
Haze_26160 Corylus avellana HOM05D003155 ORTHO05D004342 1.5e-19 100.9 206 31.6
MSTRG.14615 Avicennia marina HOM05D005388 ORTHO05D006281 3.7e-18 96.3 70 67.1
Ca_29267_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 4.1e-17 92.8 197 28.9
AagrBONN_evm.TU.Sc2ySwM_369.551 Anthoceros agrestis HOM05D005388 ORTHO05D006281 8.5e-15 85.1 77 49.4
TAR626G0924 Trochodendron aralioides HOM05D005388 ORTHO05D006281 4.2e-14 82.8 49 83.7
C05p30400 Brassica napus HOM05D005388 ORTHO05D006281 8.0e-13 78.6 95 43.2
Cfa024956 Carpinus fangiana HOM05D003894 ORTHO05D004584 5.4e-09 65.9 171 30.4
Aqoxy7G00816 Aquilegia oxysepala HOM05D003894 ORTHO05D004584 2.0e-08 63.9 175 27.4
SalBow1G2889 Salvia bowleyana HOM05D035322 ORTHO05D006281 2.0e-08 63.9 37 70.3
PRCOL_00002707 Prasinoderma coloniale HOM05D003894 ORTHO05D004584 4.5e-08 62.8 164 28.0
Haze_05509 Corylus avellana HOM05D005388 ORTHO05D006281 5.9e-08 62.4 78 43.6
Zm00001eb404490 Zea mays HOM05D003894 ORTHO05D004584 2.9e-07 60.1 119 31.1
PRCOL_00004292 Prasinoderma coloniale HOM05D003894 ORTHO05D004584 5.0e-07 59.3 183 27.9
CSS0041030 Camellia sinensis var. sinensis HOM05D003894 ORTHO05D004584 1.9e-06 57.4 121 28.9
Lalb_Chr05g0214381 Lupinus albus HOM05D003894 ORTHO05D004584 1.9e-06 57.4 121 28.9
DCAR_008499 Daucus carota HOM05D003894 ORTHO05D004584 2.5e-06 57.0 121 28.1
Migut.A01116 Erythranthe guttata HOM05D003894 ORTHO05D004584 2.5e-06 57.0 119 29.4
BcaB03g15262 Brassica carinata HOM05D006412 ORTHO05D008025 3.2e-06 56.6 181 26.0
Nn6g33915 Nelumbo nucifera HOM05D003894 ORTHO05D004584 4.2e-06 56.2 119 28.6
Glyma.05G060500 Glycine max HOM05D003894 ORTHO05D004584 5.5e-06 55.8 119 29.4
RcHm_v2.0_Chr7g0203621 Rosa chinensis HOM05D003894 ORTHO05D004584 5.5e-06 55.8 130 25.4
A07p33470 Brassica napus HOM05D006412 ORTHO05D008025 7.2e-06 55.5 181 25.4
Carub.0002s1254 Capsella rubella HOM05D006412 ORTHO05D008025 7.2e-06 55.5 181 25.4
BcaC08g46048 Brassica carinata HOM05D006412 ORTHO05D008025 9.4e-06 55.1 181 25.4
C06p39860 Brassica napus HOM05D006412 ORTHO05D008025 9.4e-06 55.1 181 25.4


User provided reference genes

Program Settings