Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_19212_v3 Cicer arietinum L. HOM05D005589 ORTHO05D006948 0.0e+00 1532.3 820 100.0
TPR.G2986 Trifolium pratense HOM05D005589 ORTHO05D006948 0.0e+00 1398.6 823 91.1
Psat7g220760 Pisum sativum HOM05D005589 ORTHO05D006948 0.0e+00 1392.9 820 91.7
Lj3g0027543 Lotus japonicus HOM05D005589 ORTHO05D006948 0.0e+00 1343.9 818 87.5
Medtr4g062090 Medicago truncatula HOM05D005589 ORTHO05D006948 0.0e+00 1331.2 823 88.2
Lalb_Chr19g0137591 Lupinus albus HOM05D005589 ORTHO05D006948 0.0e+00 1315.4 820 85.0
Phvul.011G069300 Phaseolus vulgaris HOM05D005589 ORTHO05D006948 0.0e+00 1282.3 819 82.8
Glyma.12G074800 Glycine max HOM05D005589 ORTHO05D006948 0.0e+00 1275.8 819 83.5
VMungo1127G2244 Vigna mungo HOM05D005589 ORTHO05D006948 0.0e+00 1273.1 819 82.7
arahy.Tifrunner.gnm1.ann1.3ELA68 Arachis hypogaea HOM05D005589 ORTHO05D006948 0.0e+00 1182.9 858 75.9
Cfa011427 Carpinus fangiana HOM05D005589 ORTHO05D006948 0.0e+00 1144.0 822 73.5
Haze_24005 Corylus avellana HOM05D005589 ORTHO05D006948 0.0e+00 1140.2 858 71.7
CiPaw.13G101800 Carya illinoinensis HOM05D005589 ORTHO05D006948 0.0e+00 1132.1 819 74.1
MD11G1116800 Malus domestica HOM05D005589 ORTHO05D006948 0.0e+00 1128.6 823 73.6
Atru.chr3.3796 Acer truncatum HOM05D005589 ORTHO05D006948 0.0e+00 1114.4 821 72.1
MD03G1103200 Malus domestica HOM05D005589 ORTHO05D006948 0.0e+00 1111.7 822 72.9
FAN16G1588 Fragaria x ananassa HOM05D005589 ORTHO05D006948 0.0e+00 1105.5 821 72.1
RcHm_v2.0_Chr5g0062341 Rosa chinensis HOM05D005589 ORTHO05D006948 0.0e+00 1101.7 821 72.1
GSVIVG01025056001 Vitis vinifera HOM05D005589 ORTHO05D006948 0.0e+00 1101.7 822 71.3
Ciclev10027829m.g Citrus clementina HOM05D005589 ORTHO05D006948 0.0e+00 1101.3 821 71.1
FvH4_3g34630 Fragaria vesca HOM05D005589 ORTHO05D006948 0.0e+00 1097.0 821 71.7
CSS0045601 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 0.0e+00 1093.6 823 72.1
FAN11G1618 Fragaria x ananassa HOM05D005589 ORTHO05D006948 0.0e+00 1092.0 821 71.7
FAN25G3171 Fragaria x ananassa HOM05D005589 ORTHO05D006948 0.0e+00 1085.1 828 71.1
Duzib168G1570 Durio zibethinus HOM05D005589 ORTHO05D006948 0.0e+00 1082.4 822 71.0
Prupe.6G087200 Prunus persica HOM05D005589 ORTHO05D006948 5.6e-312 1074.7 788 73.7
Dinv26284 Davidia involucrata HOM05D005589 ORTHO05D006948 1.1e-311 1073.2 788 72.6
Gorai.009G102500 Gossypium raimondii HOM05D005589 ORTHO05D006948 2.2e-311 1072.0 821 70.9
Gohir.D05G098801 Gossypium hirsutum HOM05D005589 ORTHO05D006948 8.4e-311 1070.1 821 70.8
Gohir.A05G098800 Gossypium hirsutum HOM05D005589 ORTHO05D006948 1.5e-310 1069.3 821 70.9
FAN21G0436 Fragaria x ananassa HOM05D005589 ORTHO05D006948 1.6e-309 1065.8 824 69.9
CANSAT54G1803 Cannabis sativa HOM05D005589 ORTHO05D006948 2.7e-309 1065.1 821 70.2
COL.COLO4_18425 Corchorus olitorius HOM05D005589 ORTHO05D006948 1.7e-306 1055.8 822 70.2
CSS0023618 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 4.9e-306 1054.3 823 70.2
Thecc.09G329900 Theobroma cacao HOM05D005589 ORTHO05D006948 5.4e-305 1050.8 821 69.2
Lj1A176T55 Lonicera japonica HOM05D005589 ORTHO05D006948 1.2e-304 1049.7 822 69.5
TWI31G1338 Tripterygium wilfordii HOM05D005589 ORTHO05D006948 2.3e-303 1045.4 818 69.2
MELO3C020678.2 Cucumis melo HOM05D005589 ORTHO05D006948 7.3e-302 1040.4 818 68.1
CsaV3_1G033840 Cucumis sativus L. HOM05D005589 ORTHO05D006948 8.0e-301 1036.9 818 68.0
Rhsim13G0088500 Rhododendron simsii HOM05D005589 ORTHO05D006948 1.0e-300 1036.6 824 68.2
ClCG03G001750 Citrullus lanatus HOM05D005589 ORTHO05D006948 4.4e-299 1031.2 818 67.2
Potri.001G234300 Populus trichocarpa HOM05D005589 ORTHO05D006948 4.4e-299 1031.2 821 68.2
Solyc11g072950.3 Solanum lycopersicum HOM05D005589 ORTHO05D006948 5.7e-299 1030.8 820 67.9
Nitab4.5_0002684g0170 Nicotiana tabacum HOM05D005589 ORTHO05D006948 2.9e-298 1028.5 821 67.8
Sopen11g030610 Solanum pennellii HOM05D005589 ORTHO05D006948 2.9e-298 1028.5 820 67.8
Cc01_g12110 Coffea canephora HOM05D005589 ORTHO05D006948 4.9e-298 1027.7 822 68.5
Nitab4.5_0007030g0040 Nicotiana tabacum HOM05D005589 ORTHO05D006948 3.5e-296 1021.5 820 67.3
TAR623G1588 Trochodendron aralioides HOM05D005589 ORTHO05D006948 3.9e-295 1018.1 756 71.8
Eucgr.J02099 Eucalyptus grandis HOM05D005589 ORTHO05D006948 1.1e-294 1016.5 821 67.0
DCAR_015589 Daucus carota HOM05D005589 ORTHO05D006948 8.0e-293 1010.4 830 65.8
Oeu040274.2 Olea europaea HOM05D005589 ORTHO05D006948 8.0e-293 1010.4 845 65.9
Migut.D02148 Erythranthe guttata HOM05D005589 ORTHO05D006948 6.8e-292 1007.3 821 66.5
Sed0009383 Sechium edule HOM05D005589 ORTHO05D006948 2.6e-291 1005.4 814 66.5
MBI05_g07866_MAGBIO Magnolia biondii HOM05D005589 ORTHO05D006948 1.7e-290 1002.7 843 65.7
Sabra16G0140600 Salix brachista HOM05D005589 ORTHO05D006948 6.4e-290 1000.7 894 62.6
MSTRG.21170 Avicennia marina HOM05D005589 ORTHO05D006948 1.1e-289 1000.0 825 66.4
Hund05020 Selenicereus undatus HOM05D005589 ORTHO05D006948 1.1e-289 1000.0 819 66.8
EL10Ac7g15939 Beta vulgaris HOM05D005589 ORTHO05D006948 1.0e-287 993.4 817 65.9
Ah.08g215000 Amaranthus hybridus HOM05D005589 ORTHO05D006948 8.6e-287 990.3 818 65.4
PGR119G2409 Punica granatum HOM05D005589 ORTHO05D006948 6.2e-285 984.2 820 65.7
Aqoxy2G01955 Aquilegia oxysepala HOM05D005589 ORTHO05D006948 4.0e-284 981.5 822 65.1
Glyma.11G145645 Glycine max HOM05D005589 ORTHO05D006948 5.2e-284 981.1 666 79.9
Hma1.2p1_0846F.1_g227810 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 8.9e-284 980.3 756 69.7
SGA_v2.0_scaffold394G50722 Striga asiatica HOM05D005589 ORTHO05D006948 1.5e-283 979.5 850 64.1
THA.LOC104799457 Tarenaya hassleriana HOM05D005589 ORTHO05D006948 3.7e-282 974.9 819 64.8
Thhalv10002404m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 4.9e-282 974.5 819 63.2
vmacro03127 Vaccinium macrocarpon HOM05D005589 ORTHO05D006948 4.9e-282 974.5 825 65.2
Sp5g15410 Schrenkiella parvula HOM05D005589 ORTHO05D006948 4.1e-281 971.5 819 63.2
Carub.0005s1206 Capsella rubella HOM05D005589 ORTHO05D006948 9.2e-281 970.3 819 63.2
Peaxi162Scf00411g00711 Petunia axillaris HOM05D005589 ORTHO05D006948 1.6e-280 969.5 833 64.9
Aa31LG4G15320 Aethionema arabicum HOM05D005589 ORTHO05D006948 2.3e-279 965.7 819 63.5
C03p70540 Brassica napus HOM05D005589 ORTHO05D006948 3.9e-279 964.9 819 63.1
A06p20980 Brassica napus HOM05D005589 ORTHO05D006948 6.6e-279 964.1 819 63.1
CARHR154660 Cardamine hirsuta HOM05D005589 ORTHO05D006948 2.5e-278 962.2 820 63.0
AL5G25010 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 3.3e-278 961.8 819 63.0
AT3G46220 Arabidopsis thaliana HOM05D005589 ORTHO05D006948 1.2e-277 959.9 819 63.0
Lsat_1_v5_gn_9_21601 Lactuca sativa HOM05D005589 ORTHO05D006948 2.8e-277 958.7 818 65.0
CAN.G755.19 Capsicum annuum HOM05D005589 ORTHO05D006948 3.6e-277 958.4 817 64.6
PSO339G3114 Papaver somniferum HOM05D005589 ORTHO05D006948 1.7e-274 949.5 818 63.8
BolC3t19334H Brassica oleracea HOM05D005589 ORTHO05D006948 2.9e-274 948.7 835 61.9
PSO384G0870 Papaver somniferum HOM05D005589 ORTHO05D006948 1.2e-272 943.3 819 63.9
Manes.04G029200 Manihot esculenta HOM05D005589 ORTHO05D006948 7.8e-272 940.6 758 67.2
PGSC0003DMG400015549 Solanum tuberosum HOM05D005589 ORTHO05D006948 6.6e-271 937.6 819 63.2
HanXRQChr08g0228221 Helianthus annuus HOM05D005589 ORTHO05D006948 1.2e-269 933.3 814 63.0
BraA06t25186Z Brassica rapa HOM05D005589 ORTHO05D006948 6.2e-269 931.0 862 59.7
AUR62009648 Chenopodium quinoa HOM05D005589 ORTHO05D006948 6.2e-269 931.0 829 62.7
AUR62001854 Chenopodium quinoa HOM05D005589 ORTHO05D006948 1.2e-267 926.8 920 57.6
ECA247G1976 Erigeron canadensis HOM05D005589 ORTHO05D006948 8.4e-266 920.6 819 62.1
Os05g0117600 Oryza sativa ssp. japonica HOM05D005589 ORTHO05D006948 3.2e-249 865.5 822 57.3
Zm00001eb266020 Zea mays HOM05D005589 ORTHO05D006948 8.4e-242 840.9 824 55.6
Thhalv10002414m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 4.2e-241 838.6 819 57.8
arahy.Tifrunner.gnm1.ann1.0DF5JX Arachis hypogaea HOM05D005589 ORTHO05D006948 2.8e-237 825.9 623 74.5
Sc21g0005390 Simmondsia chinensis HOM05D005589 ORTHO05D006948 3.7e-229 798.9 674 64.1
HPP92_025619 Vanilla planifolia HOM05D005589 ORTHO05D006948 7.9e-224 781.2 865 51.7
Cpa.g.sc252.12 Carica papaya HOM05D005589 ORTHO05D006948 1.5e-222 776.9 825 55.8
unitig_37.g12679 Utricularia gibba HOM05D005589 ORTHO05D006948 1.4e-217 760.4 822 53.0
Actinidia07078 Actinidia chinensis HOM05D005589 ORTHO05D006948 5.3e-204 715.3 595 64.7
AagrBONN_evm.TU.Sc2ySwM_228.2492 Anthoceros agrestis HOM05D005589 ORTHO05D006948 1.9e-164 583.9 773 45.3
Pp3c8_20630 Physcomitrium patens HOM05D005589 ORTHO05D006948 5.6e-161 572.4 833 43.3
SMO196G0111 Selaginella moellendorffii HOM05D005589 ORTHO05D006948 2.2e-157 560.5 785 42.8
BcaC01g01924 Brassica carinata HOM05D005589 ORTHO05D006948 3.6e-152 543.1 544 57.0
CBR_g777 Chara braunii HOM05D005589 ORTHO05D006948 2.2e-141 507.3 860 38.0
ATR0759G074 Amborella trichopoda HOM05D005589 ORTHO05D006948 9.3e-140 501.9 375 68.3
Hma1.2p1_0846F.1_g227820 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 9.3e-140 501.9 404 69.3
CBR_g29437 Chara braunii HOM05D005589 ORTHO05D006948 1.6e-139 501.1 779 39.8
Mapoly0007s0143 Marchantia polymorpha HOM05D005589 ORTHO05D006948 6.7e-138 495.7 832 38.5
SalBow3G3271 Salvia bowleyana HOM05D005589 ORTHO05D006948 1.6e-136 491.1 324 75.6
SalBow3G0177 Salvia bowleyana HOM05D005589 ORTHO05D006948 4.9e-133 479.6 493 55.2
Actinidia37259 Actinidia chinensis HOM05D005589 ORTHO05D006948 7.7e-110 402.5 269 75.1
AL1G56500 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 2.1e-99 367.9 488 47.7
CDE02G1253 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 2.1e-99 367.9 255 71.0
SEGI_37108 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 1.0e-98 365.5 275 64.4
AL1G56480 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 2.7e-91 340.9 311 60.1
CSS0044614 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 1.2e-75 288.9 243 68.7
arahy.Tifrunner.gnm1.ann1.35TLEJ Arachis hypogaea HOM05D005589 ORTHO05D006948 1.4e-63 248.8 221 63.8
SEGI_34947 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 3.0e-53 214.5 354 40.4
Cre16.g686650 Chlamydomonas reinhardtii HOM05D005589 ORTHO05D006948 1.1e-52 212.6 812 25.9
CSS0011793 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 2.5e-44 184.9 163 60.7
arahy.Tifrunner.gnm1.ann1.HF8MSC Arachis hypogaea HOM05D005589 ORTHO05D006948 1.4e-39 169.1 207 49.8
PRCOL_00006228 Prasinoderma coloniale HOM05D005589 ORTHO05D006948 4.6e-38 164.1 856 22.8
Sc21g0005380 Simmondsia chinensis HOM05D005589 ORTHO05D006948 8.7e-37 159.8 122 70.5
arahy.Tifrunner.gnm1.ann1.KKDX05 Arachis hypogaea HOM05D001394 ORTHO05D001237 1.5e-36 159.1 93 86.0
BcaB01g01018 Brassica carinata HOM05D005589 ORTHO05D006948 1.5e-36 159.1 119 69.7
ATR0759G002 Amborella trichopoda HOM05D005589 ORTHO05D006948 1.4e-34 152.5 245 42.9
ATR0759G057 Amborella trichopoda HOM05D005589 ORTHO05D006948 1.9e-28 132.1 101 71.3
arahy.Tifrunner.gnm1.ann1.NIGF9J Arachis hypogaea HOM05D001394 ORTHO05D001237 1.9e-28 132.1 118 65.3
arahy.Tifrunner.gnm1.ann1.DV3IGD Arachis hypogaea HOM05D005589 ORTHO05D006948 1.1e-26 126.3 86 79.1
Gohir.D08G115100 Gossypium hirsutum HOM05D005589 ORTHO05D047064 3.4e-25 121.3 154 46.1
Gorai.004G124000 Gossypium raimondii HOM05D005589 ORTHO05D047064 3.4e-25 121.3 154 46.1
Actinidia37258 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.2e-22 112.8 70 84.3
arahy.Tifrunner.gnm1.ann1.LY30IG Arachis hypogaea HOM05D005589 ORTHO05D006948 3.5e-22 111.3 134 50.7
arahy.Tifrunner.gnm1.ann1.LTYN5B Arachis hypogaea HOM05D005589 ORTHO05D006948 1.2e-17 96.3 180 38.9
Actinidia37260 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.3e-16 92.8 123 40.7
SEGI_32388 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 4.6e-14 84.3 79 55.7
HanXRQChr10g0314321 Helianthus annuus HOM05D005589 ORTHO05D006948 8.7e-13 80.1 62 67.7
CDE02G0022 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 2.9e-08 65.1 47 72.3
Aa31LG4G15080 Aethionema arabicum HOM05D005589 ORTHO05D006948 1.6e-06 59.3 123 34.1


User provided reference genes

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