Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_19148_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 1.7e-123 446.0 224 100.0
Glyma.12G062600 Glycine max HOM05D005444 ORTHO05D006773 1.8e-98 362.8 221 81.0
Lj3g0017515 Lotus japonicus HOM05D005444 ORTHO05D006773 1.6e-97 359.8 222 80.6
Phvul.011G063700 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 2.1e-94 349.4 221 79.2
VMungo1127G0766 Vigna mungo HOM05D005444 ORTHO05D006773 3.4e-92 342.0 221 76.9
Lalb_Chr01g0003631 Lupinus albus HOM05D005444 ORTHO05D006773 1.0e-85 320.5 228 75.4
arahy.Tifrunner.gnm1.ann1.9NI65Y Arachis hypogaea HOM05D005444 ORTHO05D006773 7.0e-82 307.8 225 73.3
arahy.Tifrunner.gnm1.ann1.T6ZDSA Arachis hypogaea HOM05D005444 ORTHO05D006773 7.0e-82 307.8 225 72.9
Cfa011517 Carpinus fangiana HOM05D005444 ORTHO05D006773 3.5e-81 305.4 229 69.9
Haze_24114 Corylus avellana HOM05D005444 ORTHO05D006773 7.8e-81 304.3 229 69.9
TPR.G34263 Trifolium pratense HOM05D005444 ORTHO05D006773 1.0e-80 303.9 208 71.6
Medtr2g097230 Medicago truncatula HOM05D005444 ORTHO05D006773 6.6e-80 301.2 207 72.0
Sabra16G0145900 Salix brachista HOM05D005444 ORTHO05D006773 6.6e-80 301.2 200 73.0
GSVIVG01024939001 Vitis vinifera HOM05D005444 ORTHO05D006773 3.3e-79 298.9 233 68.7
Potri.001G241400 Populus trichocarpa HOM05D005444 ORTHO05D006773 4.3e-79 298.5 200 73.5
CiPaw.13G092700 Carya illinoinensis HOM05D005444 ORTHO05D006773 5.6e-79 298.1 227 67.0
arahy.Tifrunner.gnm1.ann1.XH3YCC Arachis hypogaea HOM05D005444 ORTHO05D006773 2.8e-78 295.8 237 65.8
CANSAT54G1668 Cannabis sativa HOM05D005444 ORTHO05D006773 4.7e-78 295.0 214 69.6
arahy.Tifrunner.gnm1.ann1.3F7RX4 Arachis hypogaea HOM05D005444 ORTHO05D006773 1.8e-77 293.1 237 65.4
Ca_01319_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 1.8e-77 293.1 208 70.7
Ciclev10028946m.g Citrus clementina HOM05D005444 ORTHO05D006773 3.1e-77 292.4 228 66.2
Prupe.6G074400 Prunus persica HOM05D005444 ORTHO05D006773 6.8e-77 291.2 196 74.5
Glyma.13G336800 Glycine max HOM05D005444 ORTHO05D006773 8.9e-77 290.8 184 77.2
Glyma.15G037500 Glycine max HOM05D005444 ORTHO05D006773 3.4e-76 288.9 183 76.5
Dinv04178 Davidia involucrata HOM05D005444 ORTHO05D006773 1.3e-75 287.0 228 64.0
Manes.02G131500 Manihot esculenta HOM05D005444 ORTHO05D006773 1.3e-75 287.0 239 64.9
CSS0026048 Camellia sinensis var. sinensis HOM05D005444 ORTHO05D006773 1.7e-75 286.6 227 65.2
FvH4_3g36480 Fragaria vesca HOM05D005444 ORTHO05D006773 1.4e-74 283.5 228 65.4
Actinidia34411 Actinidia chinensis HOM05D005444 ORTHO05D006773 2.4e-74 282.7 226 64.2
FAN21G3395 Fragaria x ananassa HOM05D005444 ORTHO05D006773 7.0e-74 281.2 228 64.9
Gorai.001G111300 Gossypium raimondii HOM05D005444 ORTHO05D006773 7.0e-74 281.2 195 72.3
QL01p031522 Quercus lobata HOM05D005444 ORTHO05D006773 7.0e-74 281.2 238 63.9
Thecc.09G320000 Theobroma cacao HOM05D005444 ORTHO05D006773 7.0e-74 281.2 179 75.4
Sed0025445 Sechium edule HOM05D005444 ORTHO05D006773 1.6e-73 280.0 228 62.3
MD03G1090200 Malus domestica HOM05D005444 ORTHO05D006773 2.0e-73 279.6 186 73.1
Gohir.A07G098900 Gossypium hirsutum HOM05D005444 ORTHO05D006773 3.5e-73 278.9 195 71.8
Gohir.D07G103400 Gossypium hirsutum HOM05D005444 ORTHO05D006773 3.5e-73 278.9 195 71.8
Potri.009G032300 Populus trichocarpa HOM05D005444 ORTHO05D006773 7.8e-73 277.7 181 73.5
Lj1A150T42 Lonicera japonica HOM05D005444 ORTHO05D006773 1.0e-72 277.3 207 67.1
Duzib168G1171 Durio zibethinus HOM05D005444 ORTHO05D006773 1.3e-72 276.9 187 73.3
Phvul.L006243 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 1.3e-72 276.9 182 75.3
Sabra09G0022900 Salix brachista HOM05D005444 ORTHO05D006773 1.3e-72 276.9 180 73.9
Rhsim01G0229400 Rhododendron simsii HOM05D005444 ORTHO05D006773 3.0e-72 275.8 228 63.6
Atru.chr3.3946 Acer truncatum HOM05D005444 ORTHO05D006773 6.6e-72 274.6 200 68.5
vmacro14541 Vaccinium macrocarpon HOM05D005444 ORTHO05D006773 8.6e-72 274.2 227 61.7
Sc21g0005860 Simmondsia chinensis HOM05D005444 ORTHO05D006773 4.3e-71 271.9 199 67.8
COL.COLO4_18527 Corchorus olitorius HOM05D005444 ORTHO05D006773 7.3e-71 271.2 188 70.2
MD11G1099800 Malus domestica HOM05D005444 ORTHO05D006773 7.3e-71 271.2 197 68.5
RcHm_v2.0_Chr5g0065341 Rosa chinensis HOM05D005444 ORTHO05D006773 9.5e-71 270.8 207 65.7
Peaxi162Scf00774g00121 Petunia axillaris HOM05D005444 ORTHO05D006773 4.7e-70 268.5 213 64.3
TAR633G2200 Trochodendron aralioides HOM05D005444 ORTHO05D006773 4.7e-70 268.5 231 62.8
Nitab4.5_0000463g0210 Nicotiana tabacum HOM05D005444 ORTHO05D006773 6.2e-70 268.1 208 65.9
FAN25G3546 Fragaria x ananassa HOM05D005444 ORTHO05D006773 1.8e-69 266.5 241 58.9
SalBow3G1488 Salvia bowleyana HOM05D005444 ORTHO05D006773 3.1e-69 265.8 180 70.0
CAN.G394.63 Capsicum annuum HOM05D005444 ORTHO05D006773 4.0e-69 265.4 198 66.7
ECA236G0569 Erigeron canadensis HOM05D005444 ORTHO05D006773 8.9e-69 264.2 201 62.2
FAN16G3284 Fragaria x ananassa HOM05D005444 ORTHO05D006773 8.9e-69 264.2 265 55.5
Eucgr.B02353 Eucalyptus grandis HOM05D005444 ORTHO05D006773 2.0e-68 263.1 180 70.0
FAN11G0832 Fragaria x ananassa HOM05D005444 ORTHO05D006773 1.3e-67 260.4 275 54.5
Lsat_1_v5_gn_8_73500 Lactuca sativa HOM05D005444 ORTHO05D006773 1.3e-67 260.4 193 63.7
VMungo1080G1107 Vigna mungo HOM05D000758 ORTHO05D002867 1.3e-67 260.4 210 66.7
AUR62009560 Chenopodium quinoa HOM05D005444 ORTHO05D006773 6.4e-67 258.1 182 65.9
TWI79G0937 Tripterygium wilfordii HOM05D005444 ORTHO05D006773 6.4e-67 258.1 207 63.3
Migut.D02083 Erythranthe guttata HOM05D005444 ORTHO05D006773 8.3e-67 257.7 225 61.8
Solyc06g076250.4 Solanum lycopersicum HOM05D005444 ORTHO05D006773 1.1e-66 257.3 198 65.2
Sopen06g032680 Solanum pennellii HOM05D005444 ORTHO05D006773 1.1e-66 257.3 198 65.2
EL10Ac7g16033 Beta vulgaris HOM05D005444 ORTHO05D006773 1.4e-66 256.9 224 58.0
Cc01_g13010 Coffea canephora HOM05D005444 ORTHO05D006773 1.4e-66 256.9 183 67.8
PSO339G5422 Papaver somniferum HOM05D005444 ORTHO05D006773 1.9e-66 256.5 217 59.9
CsaV3_1G034350 Cucumis sativus L. HOM05D005444 ORTHO05D006773 3.2e-66 255.8 210 60.0
HanXRQChr05g0135061 Helianthus annuus HOM05D005444 ORTHO05D006773 3.2e-66 255.8 181 67.4
PGSC0003DMG401030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 1.2e-65 253.8 198 64.1
THA.LOC104810774 Tarenaya hassleriana HOM05D005444 ORTHO05D006773 2.1e-65 253.1 180 66.7
Nitab4.5_0001326g0170 Nicotiana tabacum HOM05D005444 ORTHO05D006773 3.5e-65 252.3 234 58.1
PSO063G3487 Papaver somniferum HOM05D005444 ORTHO05D006773 6.6e-64 248.1 217 57.6
Sp6g21080 Schrenkiella parvula HOM05D005444 ORTHO05D006773 6.6e-64 248.1 210 59.5
Actinidia23933 Actinidia chinensis HOM05D000001 ORTHO05D000003 1.5e-63 246.9 243 56.4
Hund04946 Selenicereus undatus HOM05D005444 ORTHO05D006773 1.9e-63 246.5 235 54.9
Hund18899 Selenicereus undatus HOM05D005444 ORTHO05D006773 2.5e-63 246.1 181 64.6
Oeu017397.1 Olea europaea HOM05D005444 ORTHO05D006773 7.3e-63 244.6 260 51.2
ClCG03G001420 Citrullus lanatus HOM05D005444 ORTHO05D006773 9.5e-63 244.2 290 49.0
HanXRQChr06g0178811 Helianthus annuus HOM05D005444 ORTHO05D006773 6.2e-62 241.5 182 63.7
Aa31sc23G420 Aethionema arabicum HOM05D005444 ORTHO05D006773 1.4e-61 240.4 179 65.9
AT5G59400 Arabidopsis thaliana HOM05D005444 ORTHO05D006773 1.8e-61 240.0 182 64.3
Thhalv10014435m.g Eutrema salsugineum HOM05D005444 ORTHO05D006773 1.8e-61 240.0 183 63.4
BcaC04g19778 Brassica carinata HOM05D005444 ORTHO05D006773 3.1e-61 239.2 181 64.1
C09p51810 Brassica napus HOM05D005444 ORTHO05D006773 3.1e-61 239.2 181 64.1
BolC9t58042H Brassica oleracea HOM05D005444 ORTHO05D006773 3.1e-61 239.2 181 64.1
BraA10t43744Z Brassica rapa HOM05D005444 ORTHO05D006773 3.1e-61 239.2 181 64.1
ATR0559G091 Amborella trichopoda HOM05D005444 ORTHO05D006773 6.8e-61 238.0 223 54.3
A10p16600 Brassica napus HOM05D005444 ORTHO05D006773 8.9e-61 237.7 181 63.5
AL8G35870 Arabidopsis lyrata HOM05D005444 ORTHO05D006773 2.0e-60 236.5 203 58.6
Carub.0008s2007 Capsella rubella HOM05D005444 ORTHO05D006773 2.6e-60 236.1 182 62.6
BcaB08g36261 Brassica carinata HOM05D005444 ORTHO05D006773 1.3e-59 233.8 181 62.4
CDE04G2637 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 1.4e-58 230.3 191 58.6
Dinv17019 Davidia involucrata HOM05D005444 ORTHO05D006773 2.7e-57 226.1 230 54.3
Dinv42967 Davidia involucrata HOM05D005444 ORTHO05D006773 2.7e-57 226.1 230 54.3
Dinv43132 Davidia involucrata HOM05D005444 ORTHO05D006773 2.7e-57 226.1 230 54.3
SEGI_38540 Sequoiadendron giganteum HOM05D005444 ORTHO05D006773 2.7e-57 226.1 214 57.0
MELO3C020623.2 Cucumis melo HOM05D005444 ORTHO05D006773 1.3e-56 223.8 194 60.3
CDE09G1090 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 2.3e-56 223.0 205 58.5
Psat5g286680 Pisum sativum HOM05D005444 ORTHO05D006773 2.3e-56 223.0 225 56.9
Cpa.g.sc81.131 Carica papaya HOM05D005444 ORTHO05D006773 2.5e-55 219.5 180 64.4
PGR102G1676 Punica granatum HOM05D005444 ORTHO05D006773 3.3e-55 219.2 200 60.5
TPR.G1035 Trifolium pratense HOM05D005444 ORTHO05D006773 2.4e-50 203.0 134 79.9
Mapoly0050s0097 Marchantia polymorpha HOM05D005444 ORTHO05D006773 9.3e-50 201.1 182 55.5
AUR62001772 Chenopodium quinoa HOM05D005444 ORTHO05D006773 7.8e-49 198.0 206 51.0
Oeu002422.1 Olea europaea HOM05D005444 ORTHO05D006773 8.7e-48 194.5 411 33.8
AagrBONN_evm.TU.Sc2ySwM_368.577 Anthoceros agrestis HOM05D005444 ORTHO05D006773 2.8e-46 189.5 180 55.0
TPR.G3768 Trifolium pratense HOM05D005444 ORTHO05D006773 1.8e-45 186.8 115 82.6
Pp3c1_24530 Physcomitrium patens HOM05D005444 ORTHO05D006773 1.5e-44 183.7 189 52.9
Duzib170G0057 Durio zibethinus HOM05D005444 ORTHO05D006773 2.9e-43 179.5 135 67.4
HPP92_009462 Vanilla planifolia HOM05D005444 ORTHO05D006773 4.2e-42 175.6 162 54.9
Pp3c14_5400 Physcomitrium patens HOM05D005444 ORTHO05D006773 7.1e-42 174.9 179 53.1
Aqoxy1G00927 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 3.9e-32 142.5 113 63.7
SGA_v2.0_scaffold203G41535 Striga asiatica HOM05D005444 ORTHO05D006773 5.1e-32 142.1 94 72.3
SGA_v2.0_scaffold203G41537 Striga asiatica HOM05D005444 ORTHO05D006773 5.1e-32 142.1 105 65.7
unitig_747.g22036 Utricularia gibba HOM05D005444 ORTHO05D006773 9.0e-29 131.3 75 77.3
Ah.15g097630 Amaranthus hybridus HOM05D005444 ORTHO05D006773 2.0e-28 130.2 82 73.2
TPR.G27554 Trifolium pratense HOM05D005444 ORTHO05D006773 2.6e-28 129.8 74 86.5
PGSC0003DMG402030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 1.8e-24 117.1 106 55.7
Os05g0110800 Oryza sativa ssp. japonica HOM05D005444 ORTHO05D006773 5.1e-24 115.5 67 79.1
MCO07G449 Micromonas commoda HOM05D005444 ORTHO05D006773 6.7e-24 115.2 182 38.5
HanXRQChr06g0167871 Helianthus annuus HOM05D000219 ORTHO05D006773 5.7e-23 112.1 81 64.2
Glyma.11G138967 Glycine max HOM05D005444 ORTHO05D006773 7.4e-23 111.7 74 78.4
HanXRQChr10g0291051 Helianthus annuus HOM05D005444 ORTHO05D006773 9.6e-23 111.3 77 67.5
HanXRQChr10g0291061 Helianthus annuus HOM05D005444 ORTHO05D006773 9.6e-23 111.3 77 67.5
Medtr4g064030 Medicago truncatula HOM05D005444 ORTHO05D006773 4.1e-21 105.9 101 56.4
CARHR285770 Cardamine hirsuta HOM05D005444 ORTHO05D006773 1.2e-20 104.4 109 50.5
Aqoxy1G00926 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 2.6e-20 103.2 89 59.6
Zm00001eb355820 Zea mays HOM05D005444 ORTHO05D006773 6.7e-16 88.6 102 46.1
TPR.G376 Trifolium pratense HOM05D025391 ORTHO05D030167 8.7e-16 88.2 41 95.1
unitig_747.g22037 Utricularia gibba HOM05D005444 ORTHO05D006773 1.5e-15 87.4 79 53.2
Psat5g007960 Pisum sativum HOM05D005444 ORTHO05D006773 5.7e-15 85.5 72 61.1
TAR636G2897 Trochodendron aralioides HOM05D005444 ORTHO05D006773 9.7e-15 84.7 80 57.5
DCAR_005353 Daucus carota HOM05D005444 ORTHO05D006773 1.8e-13 80.5 60 63.3
Psat4g229040 Pisum sativum HOM05D005444 ORTHO05D006773 1.8e-13 80.5 46 78.3
COL.COLO4_35627 Corchorus olitorius HOM05D005444 ORTHO05D001950 2.4e-13 80.1 105 46.7
AUR62031662 Chenopodium quinoa HOM05D001050 ORTHO05D001270 6.9e-13 78.6 44 75.0
Ah.15g097620 Amaranthus hybridus HOM05D005444 ORTHO05D006773 1.2e-12 77.8 44 75.0
BcaB01g04587 Brassica carinata HOM05D000021 ORTHO05D000010 3.6e-09 66.2 78 46.2
Nn2g13370 Nelumbo nucifera HOM05D005444 ORTHO05D006773 9.7e-07 58.2 28 85.7
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 4.8e-06 55.8 58 43.1


User provided reference genes

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