Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_19076_v3 Cicer arietinum L. HOM05D005996 ORTHO05D007507 0.0e+00 1578.5 962 100.0
Medtr4g072990 Medicago truncatula HOM05D005996 ORTHO05D007507 3.0e-283 978.8 969 70.8
TPR.G39263 Trifolium pratense HOM05D005996 ORTHO05D007507 4.5e-279 964.9 951 71.7
Psat7g180560 Pisum sativum HOM05D005996 ORTHO05D007507 8.6e-262 907.5 951 69.3
Glyma.12G033700 Glycine max HOM05D005996 ORTHO05D007507 8.1e-260 901.0 952 66.2
Glyma.09G218800 Glycine max HOM05D005996 ORTHO05D007507 3.1e-251 872.5 961 64.5
Lj3g0021328 Lotus japonicus HOM05D005996 ORTHO05D007507 3.4e-242 842.4 954 64.8
VMungo1127G0707 Vigna mungo HOM05D005996 ORTHO05D007507 1.2e-239 833.9 962 62.1
Phvul.011G036300 Phaseolus vulgaris HOM05D005996 ORTHO05D007507 3.8e-233 812.4 956 62.4
arahy.Tifrunner.gnm1.ann1.YQYF3H Arachis hypogaea HOM05D005996 ORTHO05D007507 7.1e-216 755.0 1017 56.9
arahy.Tifrunner.gnm1.ann1.XDQA6W Arachis hypogaea HOM05D005996 ORTHO05D007507 1.6e-215 753.8 1018 56.9
Lalb_Chr01g0001941 Lupinus albus HOM05D005996 ORTHO05D007507 1.1e-168 598.2 826 59.8
CiPaw.06G125900 Carya illinoinensis HOM05D005996 ORTHO05D007507 2.5e-168 597.0 969 51.5
Dinv04976 Davidia involucrata HOM05D005996 ORTHO05D007507 8.6e-161 572.0 973 50.7
Haze_02211 Corylus avellana HOM05D005996 ORTHO05D007507 1.8e-155 554.3 939 50.6
Manes.11G088413 Manihot esculenta HOM05D005996 ORTHO05D007507 5.4e-155 552.7 953 50.1
Cfa005165 Carpinus fangiana HOM05D005996 ORTHO05D007507 9.2e-155 552.0 956 50.0
Manes.11G088257 Manihot esculenta HOM05D005996 ORTHO05D007507 6.6e-153 545.8 960 49.7
QL11p046997 Quercus lobata HOM05D005996 ORTHO05D007507 5.6e-152 542.7 960 49.7
GSVIVG01024119001 Vitis vinifera HOM05D005996 ORTHO05D007507 2.3e-150 537.3 964 49.3
Sabra04G0111800 Salix brachista HOM05D005996 ORTHO05D007507 8.9e-150 535.4 998 41.9
Rhsim05G0064300 Rhododendron simsii HOM05D005996 ORTHO05D007507 1.2e-146 525.0 950 49.2
Eucgr.I01366 Eucalyptus grandis HOM05D005996 ORTHO05D007507 6.8e-142 509.2 958 48.1
Dinv41983 Davidia involucrata HOM05D005996 ORTHO05D007507 2.6e-141 507.3 927 49.3
Sed0023130 Sechium edule HOM05D005996 ORTHO05D007507 9.2e-139 498.8 965 48.2
Actinidia32089 Actinidia chinensis HOM05D005996 ORTHO05D007507 6.0e-138 496.1 965 47.9
Cc02_g16690 Coffea canephora HOM05D005996 ORTHO05D007507 4.7e-135 486.5 906 49.1
Thecc.02G069400 Theobroma cacao HOM05D005996 ORTHO05D007507 8.1e-135 485.7 968 46.7
Oeu046116.1 Olea europaea HOM05D005996 ORTHO05D007507 6.8e-134 482.6 888 49.7
TWI75G0427 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 5.4e-131 473.0 952 46.7
vmacro17393 Vaccinium macrocarpon HOM05D005996 ORTHO05D007507 7.1e-131 472.6 952 46.5
Ah.01g018430 Amaranthus hybridus HOM05D005996 ORTHO05D007507 2.1e-130 471.1 941 47.1
Potri.004G166600 Populus trichocarpa HOM05D005996 ORTHO05D007507 4.6e-130 469.9 959 46.8
CsaV3_2G015630 Cucumis sativus L. HOM05D005996 ORTHO05D007507 7.8e-130 469.2 958 47.5
ClCG11G003680 Citrullus lanatus HOM05D005996 ORTHO05D007507 5.1e-129 466.5 966 48.0
FvH4_2g02240 Fragaria vesca HOM05D005996 ORTHO05D007507 1.1e-128 465.3 874 50.2
Duzib052G0584 Durio zibethinus HOM05D005996 ORTHO05D007507 2.5e-128 464.2 948 46.5
MD05G1113900 Malus domestica HOM05D005996 ORTHO05D007507 2.1e-127 461.1 868 50.2
DCAR_022928 Daucus carota HOM05D005996 ORTHO05D007507 9.9e-125 452.2 915 46.9
FAN24G2882 Fragaria x ananassa HOM05D005996 ORTHO05D007507 1.3e-124 451.8 874 49.7
EL10Ac9g22244 Beta vulgaris HOM05D005996 ORTHO05D007507 5.4e-123 446.4 846 49.5
RcHm_v2.0_Chr6g0245931 Rosa chinensis HOM05D005996 ORTHO05D007507 1.1e-120 438.7 865 48.6
COL.COLO4_17237 Corchorus olitorius HOM05D005996 ORTHO05D007507 5.6e-120 436.4 961 46.5
AUR62010338 Chenopodium quinoa HOM05D005996 ORTHO05D007507 1.6e-119 434.9 965 45.8
Sed0010933 Sechium edule HOM05D005996 ORTHO05D007507 1.1e-115 422.2 967 45.3
ECA234G3379 Erigeron canadensis HOM05D005996 ORTHO05D007507 4.2e-115 420.2 917 45.9
CANSAT25G2790 Cannabis sativa HOM05D005996 ORTHO05D007507 9.3e-115 419.1 962 45.7
Gohir.D13G094700 Gossypium hirsutum HOM05D005996 ORTHO05D007507 2.1e-114 417.9 953 46.2
Nitab4.5_0000283g0180 Nicotiana tabacum HOM05D005996 ORTHO05D007507 2.7e-114 417.5 800 48.4
Gorai.001G246900 Gossypium raimondii HOM05D005996 ORTHO05D007507 3.5e-114 417.2 953 46.2
Gohir.A13G098800 Gossypium hirsutum HOM05D005996 ORTHO05D007507 6.0e-114 416.4 953 46.0
Hund06298 Selenicereus undatus HOM05D005996 ORTHO05D007507 6.0e-114 416.4 921 45.3
Lsat_1_v5_gn_4_74240 Lactuca sativa HOM05D005996 ORTHO05D007507 2.5e-112 411.0 908 45.3
MSTRG.16865 Avicennia marina HOM05D005996 ORTHO05D007507 4.8e-111 406.8 949 44.4
Sc08g0001200 Simmondsia chinensis HOM05D005996 ORTHO05D007507 4.5e-109 400.2 968 43.8
Duzib248G0011 Durio zibethinus HOM05D005996 ORTHO05D007507 6.4e-108 396.4 950 44.2
FAN15G0761 Fragaria x ananassa HOM05D005996 ORTHO05D007507 6.4e-108 396.4 873 48.7
PGR142G2892 Punica granatum HOM05D005996 ORTHO05D007507 1.4e-107 395.2 938 45.4
FAN20G0865 Fragaria x ananassa HOM05D005996 ORTHO05D007507 1.9e-107 394.8 873 48.7
Cpa.g.sc37.207 Carica papaya HOM05D005996 ORTHO05D007507 2.5e-107 394.4 962 36.6
FAN27G2880 Fragaria x ananassa HOM05D005996 ORTHO05D007507 2.5e-107 394.4 871 48.5
Prupe.8G158300 Prunus persica HOM05D005996 ORTHO05D007507 9.3e-107 392.5 775 48.8
SGA_v2.0_scaffold58G20447 Striga asiatica HOM05D005996 ORTHO05D007507 1.6e-106 391.7 982 43.8
MELO3C020773.2 Cucumis melo HOM05D005996 ORTHO05D007507 2.7e-106 391.0 926 45.2
Peaxi162Scf00362g01048 Petunia axillaris HOM05D005996 ORTHO05D007507 8.2e-103 379.4 732 49.7
Nn5g29328 Nelumbo nucifera HOM05D005996 ORTHO05D007507 3.1e-102 377.5 956 44.5
CAN.G588.14 Capsicum annuum HOM05D005996 ORTHO05D007507 5.3e-102 376.7 775 47.9
Migut.B00160 Erythranthe guttata HOM05D005996 ORTHO05D007507 6.9e-102 376.3 901 44.2
Sp7g32590 Schrenkiella parvula HOM05D005996 ORTHO05D007507 1.0e-100 372.5 936 42.8
BcaNung00650 Brassica carinata HOM05D005996 ORTHO05D007507 3.8e-100 370.5 888 43.8
PSO170G2255 Papaver somniferum HOM05D005996 ORTHO05D007507 4.2e-99 367.1 965 43.5
PSO700G0013 Papaver somniferum HOM05D005996 ORTHO05D007507 5.5e-99 366.7 980 43.1
Os10g0181200 Oryza sativa ssp. japonica HOM05D005996 ORTHO05D007507 9.3e-99 365.9 637 52.9
AL7G16380 Arabidopsis lyrata HOM05D005996 ORTHO05D007507 2.7e-98 364.4 914 42.0
Aqoxy5G01766 Aquilegia oxysepala HOM05D005996 ORTHO05D007507 5.1e-97 360.1 817 47.1
AT4G34830 Arabidopsis thaliana HOM05D005996 ORTHO05D007507 6.7e-97 359.8 949 40.4
CSS0029020 Camellia sinensis var. sinensis HOM05D005996 ORTHO05D007507 1.1e-96 359.0 453 49.9
Atru.chr5.3202 Acer truncatum HOM05D005996 ORTHO05D007507 1.1e-94 352.4 956 43.8
Ciclev10027915m.g Citrus clementina HOM05D005996 ORTHO05D007507 1.1e-94 352.4 638 54.1
Solyc01g111020.3 Solanum lycopersicum HOM05D005996 ORTHO05D007507 2.7e-90 337.8 783 47.1
ATR0955G004 Amborella trichopoda HOM05D005996 ORTHO05D007507 7.9e-90 336.3 635 52.8
Sopen01g053080 Solanum pennellii HOM05D005996 ORTHO05D007507 5.1e-89 333.6 786 46.8
HanXRQChr10g0296321 Helianthus annuus HOM05D005996 ORTHO05D007507 9.7e-88 329.3 966 42.4
Lj5C186G10 Lonicera japonica HOM05D005996 ORTHO05D007507 6.9e-86 323.2 910 44.6
THA.LOC104807280 Tarenaya hassleriana HOM05D005996 ORTHO05D007507 4.5e-85 320.5 938 41.5
BraA01t00353Z Brassica rapa HOM05D005996 ORTHO05D007507 5.9e-85 320.1 774 46.1
AUR62016883 Chenopodium quinoa HOM05D005996 ORTHO05D007507 1.4e-83 315.5 883 44.8
HPP92_022112 Vanilla planifolia HOM05D005996 ORTHO05D007507 5.5e-83 313.5 635 41.4
C01p03970 Brassica napus HOM05D005996 ORTHO05D007507 9.4e-83 312.8 885 42.9
BolC1t00389H Brassica oleracea HOM05D005996 ORTHO05D007507 9.4e-83 312.8 885 42.9
Thhalv10024275m.g Eutrema salsugineum HOM05D005996 ORTHO05D007507 1.6e-82 312.0 917 42.4
Aa31LG2G15710 Aethionema arabicum HOM05D005996 ORTHO05D007507 3.3e-80 304.3 960 40.2
Carub.0007s0547 Capsella rubella HOM05D005996 ORTHO05D007507 5.7e-80 303.5 901 41.5
TAR628G0092 Trochodendron aralioides HOM05D005996 ORTHO05D007507 5.7e-80 303.5 218 68.3
A01p03690 Brassica napus HOM05D005996 ORTHO05D007507 1.7e-79 302.0 910 41.6
Nitab4.5_0000980g0320 Nicotiana tabacum HOM05D005996 ORTHO05D007507 7.0e-78 296.6 632 49.7
MBI09_g26149_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 8.5e-76 289.7 891 42.3
TAR628G0048 Trochodendron aralioides HOM05D005996 ORTHO05D007507 2.0e-64 251.9 617 49.4
BcaNung04307 Brassica carinata HOM05D005996 ORTHO05D007507 2.5e-59 235.0 200 57.5
CDE09G0530 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 4.9e-47 194.1 344 67.7
Hma1.2p1_0032F.1_g019730 Hydrangea macrophylla HOM05D005996 ORTHO05D007507 9.2e-46 189.9 288 77.4
Nitab4.5_0000980g0280 Nicotiana tabacum HOM05D005996 ORTHO05D007507 7.5e-40 170.2 123 66.7
Zm00001eb027100 Zea mays HOM05D005996 ORTHO05D007507 1.3e-39 169.5 306 64.4
TWI75G0933 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 1.8e-33 149.1 246 39.8
AagrBONN_evm.TU.Sc2ySwM_228.2051 Anthoceros agrestis HOM05D005996 ORTHO05D007507 3.1e-33 148.3 219 40.2
SMO340G0075 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 2.0e-32 145.6 642 34.4
Pp3c12_14320 Physcomitrium patens HOM05D005996 ORTHO05D007507 7.5e-32 143.7 210 41.0
Pp3c10_19570 Physcomitrium patens HOM05D005996 ORTHO05D007507 1.4e-30 139.4 253 36.4
PGSC0003DMG400001599 Solanum tuberosum HOM05D005996 ORTHO05D007507 3.2e-30 138.3 402 56.0
CARHR243120 Cardamine hirsuta HOM05D005996 ORTHO05D007507 7.8e-29 133.7 552 46.0
ATR0913G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 8.6e-28 130.2 258 74.0
Mapoly0039s0079 Marchantia polymorpha HOM05D005996 ORTHO05D007507 6.2e-26 124.0 216 36.6
CDE09G0259 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 2.3e-25 122.1 99 57.6
SEGI_22573 Sequoiadendron giganteum HOM05D005996 ORTHO05D007507 3.1e-25 121.7 120 52.5
Mapoly0039s0078 Marchantia polymorpha HOM05D005996 ORTHO05D007507 3.7e-23 114.8 183 40.4
Pp3c7_22430 Physcomitrium patens HOM05D005996 ORTHO05D007507 1.2e-21 109.8 641 39.2
SMO240G0032 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 4.3e-19 101.3 92 54.3
CBR_g66762 Chara braunii HOM05D005996 ORTHO05D007507 2.1e-18 99.0 712 36.8
CDE09G0717 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 2.4e-14 85.5 263 35.0
MBI09_g44523_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 4.2e-14 84.7 81 56.8
CDE09G0218 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 2.7e-13 82.0 65 63.1
MCO09G858 Micromonas commoda HOM05D005996 ORTHO05D007507 2.9e-07 62.0 94 34.0
ATR0074G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 3.2e-06 58.5 48 56.2
EL10Ac7g17325 Beta vulgaris HOM05D007104 ORTHO05D008851 3.2e-06 58.5 118 27.1
Os03g0284900 Oryza sativa ssp. japonica HOM05D007104 ORTHO05D008851 3.2e-06 58.5 115 27.8
Medtr7g076350 Medicago truncatula HOM05D000001 ORTHO05D010372 7.1e-06 57.4 180 23.3


User provided reference genes

Program Settings