Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_19066_v3 Cicer arietinum L. HOM05D005755 ORTHO05D007006 2.5e-56 221.9 111 100.0
Medtr6g068850 Medicago truncatula HOM05D005755 ORTHO05D007006 1.9e-51 205.7 111 89.2
TPR.G12499 Trifolium pratense HOM05D005755 ORTHO05D007006 9.2e-51 203.4 111 87.4
Psat1g119080 Pisum sativum HOM05D005755 ORTHO05D007006 1.0e-49 199.9 111 86.5
Glyma.05G164400 Glycine max HOM05D005755 ORTHO05D007006 3.3e-48 194.9 109 86.2
Glyma.08G121800 Glycine max HOM05D005755 ORTHO05D007006 7.3e-48 193.7 109 86.2
Phvul.002G244400 Phaseolus vulgaris HOM05D005755 ORTHO05D007006 7.6e-45 183.7 109 80.7
VMungo0251G2378 Vigna mungo HOM05D001210 ORTHO05D001036 1.4e-43 179.5 106 82.1
Lalb_Chr07g0186081 Lupinus albus HOM05D005755 ORTHO05D007006 4.6e-42 174.5 111 78.4
Nn5g30302 Nelumbo nucifera HOM05D005755 ORTHO05D007006 1.3e-41 172.9 109 78.9
TAR381G1573 Trochodendron aralioides HOM05D005755 ORTHO05D007006 3.9e-41 171.4 109 75.2
Hund18453 Selenicereus undatus HOM05D005755 ORTHO05D007006 4.3e-40 167.9 109 76.1
Aqoxy3G01116 Aquilegia oxysepala HOM05D005755 ORTHO05D007006 5.6e-40 167.5 111 73.0
CANSAT11G0923 Cannabis sativa HOM05D005755 ORTHO05D007006 7.3e-40 167.2 109 75.2
Lj4g0006534 Lotus japonicus HOM05D005755 ORTHO05D007006 7.3e-40 167.2 109 76.1
FAN10G3796 Fragaria x ananassa HOM05D005755 ORTHO05D007006 9.6e-40 166.8 109 74.3
Sc05g0001890 Simmondsia chinensis HOM05D005755 ORTHO05D007006 2.1e-39 165.6 109 72.5
Dinv04676 Davidia involucrata HOM05D005755 ORTHO05D007006 3.6e-39 164.9 106 73.6
Eucgr.G02800 Eucalyptus grandis HOM05D005755 ORTHO05D007006 4.8e-39 164.5 109 70.6
FvH4_7g20160 Fragaria vesca HOM05D005755 ORTHO05D007006 4.8e-39 164.5 109 73.4
RcHm_v2.0_Chr1g0364121 Rosa chinensis HOM05D005755 ORTHO05D007006 8.1e-39 163.7 109 71.6
GSVIVG01016339001 Vitis vinifera HOM05D005755 ORTHO05D007006 8.1e-39 163.7 109 73.4
MBI19_g25006_MAGBIO Magnolia biondii HOM05D005755 ORTHO05D007006 1.4e-38 162.9 109 77.1
Manes.10G042600 Manihot esculenta HOM05D005755 ORTHO05D007006 1.8e-38 162.5 111 71.2
TWI15G0398 Tripterygium wilfordii HOM05D005755 ORTHO05D007006 1.8e-38 162.5 111 70.3
Ah.04g160050 Amaranthus hybridus HOM05D005755 ORTHO05D007006 4.0e-38 161.4 107 72.9
FAN06G3582 Fragaria x ananassa HOM05D005755 ORTHO05D007006 5.3e-38 161.0 109 70.6
TWI38G1562 Tripterygium wilfordii HOM05D005755 ORTHO05D007006 5.3e-38 161.0 111 69.4
Dinv11808 Davidia involucrata HOM05D005755 ORTHO05D007006 6.9e-38 160.6 106 71.7
FAN01G0677 Fragaria x ananassa HOM05D005755 ORTHO05D007006 6.9e-38 160.6 109 71.6
MD07G1179300 Malus domestica HOM05D005755 ORTHO05D007006 6.9e-38 160.6 109 70.6
arahy.Tifrunner.gnm1.ann1.FL0JYU Arachis hypogaea HOM05D005755 ORTHO05D007006 1.2e-37 159.8 105 76.2
arahy.Tifrunner.gnm1.ann1.QA5RE0 Arachis hypogaea HOM05D005755 ORTHO05D007006 1.2e-37 159.8 105 76.2
EL10Ac3g06003 Beta vulgaris HOM05D005755 ORTHO05D007006 1.2e-37 159.8 111 70.3
Ciclev10033129m.g Citrus clementina HOM05D005755 ORTHO05D007006 1.2e-37 159.8 109 69.7
Prupe.2G218600 Prunus persica HOM05D005755 ORTHO05D007006 1.5e-37 159.5 109 67.9
FAN03G2322 Fragaria x ananassa HOM05D005755 ORTHO05D007006 2.0e-37 159.1 106 72.6
vmacro04890 Vaccinium macrocarpon HOM05D005755 ORTHO05D007006 2.0e-37 159.1 108 70.4
MD01G1131200 Malus domestica HOM05D005755 ORTHO05D007006 3.4e-37 158.3 109 68.8
EL10Ac7g15953 Beta vulgaris HOM05D005755 ORTHO05D007006 4.5e-37 157.9 111 69.4
AUR62004768 Chenopodium quinoa HOM05D005755 ORTHO05D007006 4.5e-37 157.9 111 69.4
CsaV3_3G030820 Cucumis sativus L. HOM05D005755 ORTHO05D007006 4.5e-37 157.9 109 68.8
Hma1.2p1_0157F.1_g068960 Hydrangea macrophylla HOM05D005755 ORTHO05D007006 7.6e-37 157.1 107 72.9
Thecc.10G068000 Theobroma cacao HOM05D005755 ORTHO05D007006 9.9e-37 156.8 106 71.7
CSS0044562 Camellia sinensis var. sinensis HOM05D005755 ORTHO05D007006 1.7e-36 156.0 108 69.4
Cpa.g.sc53.20 Carica papaya HOM05D005755 ORTHO05D007006 1.7e-36 156.0 98 76.5
Duzib106G1131 Durio zibethinus HOM05D005755 ORTHO05D007006 1.7e-36 156.0 106 72.6
CiPaw.15G145100 Carya illinoinensis HOM05D005755 ORTHO05D007006 2.2e-36 155.6 109 69.7
DCAR_015273 Daucus carota HOM05D005755 ORTHO05D007006 2.9e-36 155.2 107 70.1
QL08p056843 Quercus lobata HOM05D005755 ORTHO05D007006 3.8e-36 154.8 107 70.1
HPP92_016041 Vanilla planifolia HOM05D005755 ORTHO05D007006 3.8e-36 154.8 109 67.0
Sed0018161 Sechium edule HOM05D005755 ORTHO05D007006 4.9e-36 154.5 109 67.9
AUR62037483 Chenopodium quinoa HOM05D005755 ORTHO05D007006 6.4e-36 154.1 103 72.8
Atru.chr12.636 Acer truncatum HOM05D005755 ORTHO05D007006 8.4e-36 153.7 111 68.5
EL10Ac6g13227 Beta vulgaris HOM05D005755 ORTHO05D007006 1.4e-35 152.9 111 66.7
Cfa019629 Carpinus fangiana HOM05D005755 ORTHO05D007006 1.4e-35 152.9 111 67.6
PGR142G0594 Punica granatum HOM05D005755 ORTHO05D007006 1.4e-35 152.9 109 68.8
Gohir.A01G133200 Gossypium hirsutum HOM05D005755 ORTHO05D007006 1.9e-35 152.5 106 69.8
Gorai.002G143500 Gossypium raimondii HOM05D005755 ORTHO05D007006 1.9e-35 152.5 106 69.8
EL10Ac7g17935 Beta vulgaris HOM05D005755 ORTHO05D007006 2.4e-35 152.1 103 71.8
Duzib114G0063 Durio zibethinus HOM05D005755 ORTHO05D007006 3.2e-35 151.8 99 75.8
Potri.008G044200 Populus trichocarpa HOM05D005755 ORTHO05D007006 3.2e-35 151.8 109 69.7
CDE10G1261 Ceratophyllum demersum HOM05D005755 ORTHO05D007006 7.1e-35 150.6 109 66.1
Sabra08G0030600 Salix brachista HOM05D005755 ORTHO05D007006 7.1e-35 150.6 111 68.5
Actinidia38859 Actinidia chinensis HOM05D005755 ORTHO05D007006 1.6e-34 149.4 109 67.0
ECA238G0308 Erigeron canadensis HOM05D005755 ORTHO05D007006 2.1e-34 149.1 111 70.3
Peaxi162Scf00373g00210 Petunia axillaris HOM05D005755 ORTHO05D007006 2.7e-34 148.7 103 69.9
ATR1096G048 Amborella trichopoda HOM05D005755 ORTHO05D007006 6.0e-34 147.5 103 66.0
EL10Ac5g11654 Beta vulgaris HOM05D005755 ORTHO05D007006 7.9e-34 147.1 98 73.5
Lsat_1_v5_gn_2_46180 Lactuca sativa HOM05D005755 ORTHO05D007006 1.3e-33 146.4 103 68.9
Sopen04g020610 Solanum pennellii HOM05D005755 ORTHO05D007006 1.8e-33 146.0 104 69.2
Peaxi162Scf00111g00718 Petunia axillaris HOM05D005755 ORTHO05D007006 3.9e-33 144.8 100 71.0
Rhsim09G0154200 Rhododendron simsii HOM05D001639 ORTHO05D004140 5.1e-33 144.4 133 57.1
Potri.010G217300 Populus trichocarpa HOM05D005755 ORTHO05D007006 1.1e-32 143.3 105 67.6
THA.LOC104799357 Tarenaya hassleriana HOM05D005755 ORTHO05D007006 1.1e-32 143.3 109 61.5
Cc00_g19060 Coffea canephora HOM05D005755 ORTHO05D007006 1.5e-32 142.9 111 66.7
Solyc04g049970.4 Solanum lycopersicum HOM05D005755 ORTHO05D007006 1.5e-32 142.9 101 69.3
CAN.G79.77 Capsicum annuum HOM05D005755 ORTHO05D007006 3.3e-32 141.7 107 65.4
Gohir.D01G118000 Gossypium hirsutum HOM05D005755 ORTHO05D007006 4.3e-32 141.4 124 59.7
Sopen07g033930 Solanum pennellii HOM05D005755 ORTHO05D007006 7.4e-32 140.6 105 64.8
PSO675G6920 Papaver somniferum HOM05D005755 ORTHO05D007006 9.6e-32 140.2 105 63.8
PGSC0003DMG400022164 Solanum tuberosum HOM05D005755 ORTHO05D007006 9.6e-32 140.2 105 64.8
Nitab4.5_0001721g0080 Nicotiana tabacum HOM05D005755 ORTHO05D007006 1.3e-31 139.8 106 64.2
Solyc07g065720.4 Solanum lycopersicum HOM05D005755 ORTHO05D007006 1.3e-31 139.8 104 65.4
Sp6g14210 Schrenkiella parvula HOM05D005755 ORTHO05D007006 2.1e-31 139.0 109 61.5
Nitab4.5_0000061g0170 Nicotiana tabacum HOM05D005755 ORTHO05D007006 6.2e-31 137.5 104 65.4
Oeu017232.1 Olea europaea HOM05D005755 ORTHO05D007006 8.1e-31 137.1 112 64.3
Thhalv10015092m.g Eutrema salsugineum HOM05D005755 ORTHO05D007006 1.1e-30 136.7 109 62.4
Aa31LG7G12880 Aethionema arabicum HOM05D005755 ORTHO05D007006 1.4e-30 136.3 112 60.7
MSTRG.8164 Avicennia marina HOM05D005755 ORTHO05D007006 1.4e-30 136.3 99 68.7
CARHR264900 Cardamine hirsuta HOM05D005755 ORTHO05D007006 1.4e-30 136.3 109 59.6
Oeu057236.1 Olea europaea HOM05D005755 ORTHO05D007006 1.8e-30 136.0 112 64.3
SGA_v2.0_scaffold122G33246 Striga asiatica HOM05D005940 ORTHO05D007027 3.1e-30 135.2 99 66.7
AT5G51960 Arabidopsis thaliana HOM05D005755 ORTHO05D007006 5.3e-30 134.4 109 60.6
BcaB08g35550 Brassica carinata HOM05D005755 ORTHO05D007006 1.2e-29 133.3 103 63.1
Carub.0008s1205 Capsella rubella HOM05D005755 ORTHO05D007006 1.2e-29 133.3 111 59.5
Migut.F01798 Erythranthe guttata HOM05D005755 ORTHO05D007006 2.6e-29 132.1 98 67.3
SalBow1G5334 Salvia bowleyana HOM05D005755 ORTHO05D007006 2.6e-29 132.1 100 69.0
SalBow1G7067 Salvia bowleyana HOM05D005755 ORTHO05D007006 2.6e-29 132.1 100 69.0
BcaC03g14561 Brassica carinata HOM05D005755 ORTHO05D007006 4.5e-29 131.3 99 65.7
C02p20090 Brassica napus HOM05D005755 ORTHO05D007006 4.5e-29 131.3 99 65.7
BolC2t08139H Brassica oleracea HOM05D005755 ORTHO05D007006 5.8e-29 131.0 99 64.6
BraA02t06267Z Brassica rapa HOM05D005755 ORTHO05D007006 5.8e-29 131.0 99 64.6
Glyma.19G087500 Glycine max HOM05D005755 ORTHO05D007006 7.6e-29 130.6 109 63.3
SalBow3G2244 Salvia bowleyana HOM05D005755 ORTHO05D007006 7.6e-29 130.6 100 68.0
SalBow3G3619 Salvia bowleyana HOM05D005755 ORTHO05D007006 7.6e-29 130.6 100 68.0
AL8G26290 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 9.9e-29 130.2 111 58.6
AL8G32330 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 9.9e-29 130.2 109 58.7
BraA10t43055Z Brassica rapa HOM05D005755 ORTHO05D007006 3.8e-28 128.3 103 60.2
SEGI_41538 Sequoiadendron giganteum HOM05D005755 ORTHO05D007006 6.4e-28 127.5 103 58.3
A10p09750 Brassica napus HOM05D005755 ORTHO05D007006 8.4e-28 127.1 103 59.2
BcaB05g23952 Brassica carinata HOM05D005755 ORTHO05D007006 2.4e-27 125.6 99 60.6
Os11g0133900 Oryza sativa ssp. japonica HOM05D005755 ORTHO05D007006 3.2e-27 125.2 100 60.0
BcaC04g20616 Brassica carinata HOM05D005755 ORTHO05D007006 4.2e-27 124.8 103 58.3
C09p41470 Brassica napus HOM05D005755 ORTHO05D007006 4.2e-27 124.8 103 58.3
BolC9t57024H Brassica oleracea HOM05D005755 ORTHO05D007006 4.2e-27 124.8 103 58.3
unitig_8.g3685 Utricularia gibba HOM05D005755 ORTHO05D007006 7.1e-27 124.0 101 66.3
SGA_v2.0_scaffold71G24037 Striga asiatica HOM05D005755 ORTHO05D007006 2.3e-25 119.0 102 59.8
Zm00001eb235420 Zea mays HOM05D005755 ORTHO05D007006 2.5e-24 115.5 99 56.6
Zm00001eb163500 Zea mays HOM05D005755 ORTHO05D007006 5.6e-24 114.4 99 56.6
Lj3g0006677 Lotus japonicus HOM05D005755 ORTHO05D007006 6.2e-23 110.9 74 73.0
TPR.G31353 Trifolium pratense HOM05D005755 ORTHO05D007006 1.4e-22 109.8 83 67.5
Os12g0131266 Oryza sativa ssp. japonica HOM05D005755 ORTHO05D007006 7.6e-21 104.0 85 60.0
SMO207G0003 Selaginella moellendorffii HOM05D005755 ORTHO05D007006 2.2e-20 102.4 99 54.5
AagrBONN_evm.TU.Sc2ySwM_362.2659 Anthoceros agrestis HOM05D005755 ORTHO05D007006 3.2e-19 98.6 95 47.4
Lj3g0023846 Lotus japonicus HOM05D005755 ORTHO05D007006 3.2e-19 98.6 73 68.5
Mapoly0006s0175 Marchantia polymorpha HOM05D005755 ORTHO05D007006 5.5e-19 97.8 99 44.4
Haze_18895 Corylus avellana HOM05D005755 ORTHO05D007006 3.0e-17 92.0 86 53.5
Pp3c3_10790 Physcomitrium patens HOM05D005755 ORTHO05D007006 6.3e-15 84.3 100 42.0
HanXRQChr14g0436521 Helianthus annuus HOM05D005755 ORTHO05D007006 9.0e-14 80.5 70 50.0
Oeu057237.1 Olea europaea HOM05D005755 ORTHO05D007006 3.8e-12 75.1 76 52.6
Prupe.2G218400 Prunus persica HOM05D005755 ORTHO05D007006 3.8e-12 75.1 109 44.0
AL792U10010 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 1.1e-11 73.6 73 49.3
A02p12030 Brassica napus HOM05D005755 ORTHO05D007006 9.4e-11 70.5 65 52.3
ClCG08G001190 Citrullus lanatus HOM05D005755 ORTHO05D007006 3.9e-09 65.1 60 51.7
SEGI_15077 Sequoiadendron giganteum HOM05D002017 ORTHO05D007006 5.7e-08 61.2 65 43.1
CBR_g23899 Chara braunii HOM05D005755 ORTHO05D007006 1.7e-07 59.7 96 35.4


User provided reference genes

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