Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_19026_v3 Cicer arietinum L. HOM05D000120 ORTHO05D148590 5.5e-80 300.8 143 100.0
Psat7g177120 Pisum sativum HOM05D000120 ORTHO05D000068 6.4e-28 127.9 238 37.4
Medtr4g074960 Medicago truncatula HOM05D000120 ORTHO05D000068 2.0e-26 122.9 233 36.5
TPR.G32331 Trifolium pratense HOM05D000120 ORTHO05D000068 1.7e-25 119.8 247 35.2
Ca_19024_v3 Cicer arietinum L. HOM05D000120 ORTHO05D000068 6.6e-25 117.9 246 35.0
Cpa.g.sc183.4 Carica papaya HOM05D000120 ORTHO05D000068 1.6e-23 113.2 224 33.9
RcHm_v2.0_Chr7g0221731 Rosa chinensis HOM05D000120 ORTHO05D000068 8.9e-22 107.5 204 33.8
Lj2g0007205 Lotus japonicus HOM05D000120 ORTHO05D000068 1.5e-21 106.7 225 32.4
Lalb_Chr25g0282911 Lupinus albus HOM05D000120 ORTHO05D000068 1.5e-21 106.7 239 31.8
Manes.11G102200 Manihot esculenta HOM05D000120 ORTHO05D000068 2.0e-21 106.3 220 31.4
Atru.chr11.1169 Acer truncatum HOM05D000120 ORTHO05D000068 3.4e-21 105.5 223 31.4
arahy.Tifrunner.gnm1.ann1.W22BEH Arachis hypogaea HOM05D000120 ORTHO05D000068 3.4e-21 105.5 240 32.9
CSS0047898 Camellia sinensis var. sinensis HOM05D000120 ORTHO05D000068 3.4e-21 105.5 209 34.0
HanXRQChr06g0171501 Helianthus annuus HOM05D000120 ORTHO05D000068 4.4e-21 105.1 222 32.0
Aqoxy3G04262 Aquilegia oxysepala HOM05D000120 ORTHO05D000068 5.8e-21 104.8 227 33.0
Migut.D01909 Erythranthe guttata HOM05D000120 ORTHO05D000068 5.8e-21 104.8 206 35.0
Ciclev10033912m.g Citrus clementina HOM05D000120 ORTHO05D000068 9.8e-21 104.0 206 33.0
Prupe.1G346900 Prunus persica HOM05D000120 ORTHO05D000068 1.3e-20 103.6 202 34.7
Glyma.11G101300 Glycine max HOM05D000120 ORTHO05D000068 2.9e-20 102.4 242 31.4
HanXRQChr17g0544871 Helianthus annuus HOM05D000120 ORTHO05D000068 8.3e-20 100.9 236 31.4
HanXRQChr17g0544891 Helianthus annuus HOM05D000120 ORTHO05D000068 8.3e-20 100.9 236 31.4
Potri.007G071200 Populus trichocarpa HOM05D000120 ORTHO05D000068 8.3e-20 100.9 237 30.0
arahy.Tifrunner.gnm1.ann1.C8C1MT Arachis hypogaea HOM05D000120 ORTHO05D000068 1.1e-19 100.5 252 30.6
Haze_11753 Corylus avellana HOM05D000120 ORTHO05D000068 1.4e-19 100.1 227 31.7
MELO3C023598.2 Cucumis melo HOM05D000120 ORTHO05D000068 1.9e-19 99.8 248 28.6
ECA246G1442 Erigeron canadensis HOM05D000120 ORTHO05D000068 1.9e-19 99.8 235 30.2
Lj3C850T11 Lonicera japonica HOM05D000120 ORTHO05D000068 1.9e-19 99.8 241 31.1
GSVIVG01012043001 Vitis vinifera HOM05D000120 ORTHO05D000068 1.9e-19 99.8 228 30.3
CiPaw.05G168600 Carya illinoinensis HOM05D000120 ORTHO05D000068 2.4e-19 99.4 249 29.3
FvH4_5g29090 Fragaria vesca HOM05D000120 ORTHO05D000068 5.4e-19 98.2 233 30.5
FAN08G3083 Fragaria x ananassa HOM05D000120 ORTHO05D000068 5.4e-19 98.2 233 30.5
FAN18G3533 Fragaria x ananassa HOM05D000120 ORTHO05D000068 5.4e-19 98.2 233 30.5
TAR374G1200 Trochodendron aralioides HOM05D000120 ORTHO05D000068 5.4e-19 98.2 228 29.8
Oeu022176.1 Olea europaea HOM05D000120 ORTHO05D000068 7.0e-19 97.8 237 30.4
Sabra07G0059900 Salix brachista HOM05D000120 ORTHO05D000068 7.0e-19 97.8 236 30.9
FAN13G1087 Fragaria x ananassa HOM05D000120 ORTHO05D000068 9.2e-19 97.4 229 30.6
Glyma.12G027200 Glycine max HOM05D000120 ORTHO05D000068 1.2e-18 97.1 254 30.3
Hma1.2p1_0122F.1_g057650 Hydrangea macrophylla HOM05D000120 ORTHO05D000068 1.2e-18 97.1 247 30.0
SalBow3G0326 Salvia bowleyana HOM05D000120 ORTHO05D000068 1.2e-18 97.1 235 28.9
Lsat_1_v5_gn_3_35560 Lactuca sativa HOM05D000120 ORTHO05D000068 2.1e-18 96.3 232 30.6
Lalb_Chr03g0024771 Lupinus albus HOM05D000120 ORTHO05D000068 2.1e-18 96.3 243 31.3
VMungo1127G2008 Vigna mungo HOM05D000120 ORTHO05D000068 2.7e-18 95.9 252 30.2
Gohir.A03G164400 Gossypium hirsutum HOM05D000120 ORTHO05D000068 4.6e-18 95.1 235 30.2
CsaV3_7G030570 Cucumis sativus L. HOM05D000120 ORTHO05D000068 6.0e-18 94.7 248 27.8
Gohir.D02G187700 Gossypium hirsutum HOM05D000120 ORTHO05D000068 6.0e-18 94.7 236 30.1
Gorai.005G210200 Gossypium raimondii HOM05D000120 ORTHO05D000068 6.0e-18 94.7 236 30.1
BcaB07g33700 Brassica carinata HOM05D000120 ORTHO05D000068 7.8e-18 94.4 221 30.8
Thecc.02G160400 Theobroma cacao HOM05D000120 ORTHO05D000068 7.8e-18 94.4 249 29.3
QL03p044100 Quercus lobata HOM05D000120 ORTHO05D000068 1.0e-17 94.0 239 27.2
Actinidia13707 Actinidia chinensis HOM05D000120 ORTHO05D000068 1.3e-17 93.6 238 28.6
Phvul.011G030300 Phaseolus vulgaris HOM05D000120 ORTHO05D000068 1.3e-17 93.6 270 27.4
Cfa008736 Carpinus fangiana HOM05D000120 ORTHO05D000068 2.3e-17 92.8 219 32.0
Cc11_g00170 Coffea canephora HOM05D000120 ORTHO05D000068 2.3e-17 92.8 233 28.8
Duzib052G0501 Durio zibethinus HOM05D000120 ORTHO05D000068 2.3e-17 92.8 235 30.6
Peaxi162Scf00363g00412 Petunia axillaris HOM05D000120 ORTHO05D000068 2.3e-17 92.8 237 30.8
Dinv17607 Davidia involucrata HOM05D000120 ORTHO05D000068 5.0e-17 91.7 238 29.8
BraA05t20988Z Brassica rapa HOM05D000120 ORTHO05D000068 1.1e-16 90.5 238 29.8
COL.COLO4_19605 Corchorus olitorius HOM05D000120 ORTHO05D000068 1.1e-16 90.5 247 29.1
FAN04G2880 Fragaria x ananassa HOM05D000120 ORTHO05D000068 1.1e-16 90.5 47 80.9
Nitab4.5_0009774g0010 Nicotiana tabacum HOM05D000120 ORTHO05D000068 1.1e-16 90.5 245 29.0
BcaB02g11293 Brassica carinata HOM05D000120 ORTHO05D000068 2.5e-16 89.4 249 28.5
BolC5t32243H Brassica oleracea HOM05D000120 ORTHO05D000068 2.5e-16 89.4 237 29.1
SGA_v2.0_scaffold7G04112 Striga asiatica HOM05D000120 ORTHO05D000068 2.5e-16 89.4 246 28.0
DCAR_002574 Daucus carota HOM05D000120 ORTHO05D000068 3.3e-16 89.0 84 50.0
Nitab4.5_0000661g0070 Nicotiana tabacum HOM05D000120 ORTHO05D000068 3.3e-16 89.0 246 29.7
MD16G1001700 Malus domestica HOM05D000120 ORTHO05D000068 4.3e-16 88.6 239 29.7
PGSC0003DMG400019898 Solanum tuberosum HOM05D000120 ORTHO05D000068 1.2e-15 87.0 246 27.2
ClCG09G004570 Citrullus lanatus HOM05D000120 ORTHO05D000068 1.6e-15 86.7 251 27.9
Thhalv10011318m.g Eutrema salsugineum HOM05D000120 ORTHO05D000068 1.6e-15 86.7 236 28.8
AL1G55760 Arabidopsis lyrata HOM05D000120 ORTHO05D000068 2.8e-15 85.9 237 28.3
BolC6t35493H Brassica oleracea HOM05D000120 ORTHO05D000068 3.6e-15 85.5 236 28.8
Sp1g35840 Schrenkiella parvula HOM05D000120 ORTHO05D000068 3.6e-15 85.5 234 27.4
BcaC08g43093 Brassica carinata HOM05D000120 ORTHO05D000068 4.7e-15 85.1 236 28.4
C06p03530 Brassica napus HOM05D000120 ORTHO05D000068 4.7e-15 85.1 236 28.4
Rhsim04G0167400 Rhododendron simsii HOM05D000120 ORTHO05D000068 8.1e-15 84.3 190 29.5
SalBow5G4401 Salvia bowleyana HOM05D000120 ORTHO05D000068 8.1e-15 84.3 48 70.8
Carub.0001s3810 Capsella rubella HOM05D000120 ORTHO05D000068 1.1e-14 84.0 236 27.5
Sopen02g003500 Solanum pennellii HOM05D000120 ORTHO05D000068 1.1e-14 84.0 269 26.0
BraA06t23616Z Brassica rapa HOM05D000120 ORTHO05D000068 1.4e-14 83.6 236 28.8
MBI06_g00927_MAGBIO Magnolia biondii HOM05D000120 ORTHO05D000068 1.4e-14 83.6 228 29.8
Solyc02g014220.3 Solanum lycopersicum HOM05D000120 ORTHO05D000068 1.4e-14 83.6 270 25.9
MBI06_g11151_MAGBIO Magnolia biondii HOM05D000120 ORTHO05D000068 2.3e-14 82.8 177 33.9
BcaC05g27544 Brassica carinata HOM05D000120 ORTHO05D000068 3.1e-14 82.4 293 26.3
C05p35290 Brassica napus HOM05D000120 ORTHO05D000068 3.1e-14 82.4 293 26.3
A05p20820 Brassica napus HOM05D000120 ORTHO05D000068 4.0e-14 82.0 260 27.3
CANSAT56G1069 Cannabis sativa HOM05D000120 ORTHO05D000068 4.0e-14 82.0 248 27.4
Eucgr.J00862 Eucalyptus grandis HOM05D000120 ORTHO05D000068 5.2e-14 81.6 207 30.4
Sed0025708 Sechium edule HOM05D000120 ORTHO05D000068 1.5e-13 80.1 247 26.3
DCAR_026906 Daucus carota HOM05D000120 ORTHO05D000068 2.0e-13 79.7 45 71.1
CAN.G157.21 Capsicum annuum HOM05D000120 ORTHO05D000068 3.4e-13 79.0 46 71.7
Aa31LG10G4990 Aethionema arabicum HOM05D000120 ORTHO05D000068 4.4e-13 78.6 234 24.8
AT1G48930 Arabidopsis thaliana HOM05D000120 ORTHO05D000068 4.4e-13 78.6 237 27.0
Dinv11716 Davidia involucrata HOM05D000482 ORTHO05D000349 5.8e-13 78.2 196 31.1
CARHR038920 Cardamine hirsuta HOM05D000120 ORTHO05D000068 9.9e-13 77.4 237 27.0
PGR044G1434 Punica granatum HOM05D000120 ORTHO05D000068 2.2e-12 76.3 235 26.8
THA.LOC104820415 Tarenaya hassleriana HOM05D000120 ORTHO05D000068 8.3e-12 74.3 247 24.7
AUR62015220 Chenopodium quinoa HOM05D000120 ORTHO05D000068 3.2e-11 72.4 74 43.2
PSO063G4131 Papaver somniferum HOM05D000120 ORTHO05D000068 3.5e-10 68.9 46 60.9
PSO782G3996 Papaver somniferum HOM05D000120 ORTHO05D000068 6.0e-10 68.2 43 65.1
vmacro08595 Vaccinium macrocarpon HOM05D000120 ORTHO05D000068 1.0e-09 67.4 60 51.7
AUR62017686 Chenopodium quinoa HOM05D000120 ORTHO05D000068 1.7e-09 66.6 49 53.1
Zm00001eb433630 Zea mays HOM05D000120 ORTHO05D000068 2.3e-09 66.2 223 24.2
ATR0618G363 Amborella trichopoda HOM05D000120 ORTHO05D000068 3.0e-09 65.9 238 25.2
EL10Ac9g22935 Beta vulgaris HOM05D000120 ORTHO05D000068 4.3e-08 62.0 71 39.4
Ah.01g012870 Amaranthus hybridus HOM05D000120 ORTHO05D000068 7.3e-08 61.2 47 59.6
Sc06g0007990 Simmondsia chinensis HOM05D000120 ORTHO05D000068 7.3e-08 61.2 39 66.7
Hma1.2p1_0281F.1_g113090 Hydrangea macrophylla HOM05D000120 ORTHO05D000068 2.1e-07 59.7 43 62.8
Hma1.2p1_1978F.1_g309825 Hydrangea macrophylla HOM05D000120 ORTHO05D000068 2.1e-07 59.7 43 62.8
EL10Ac9g22934 Beta vulgaris HOM05D000120 ORTHO05D000068 3.6e-07 58.9 47 57.4
Hma1.2p1_0261F.1_g104990 Hydrangea macrophylla HOM05D000120 ORTHO05D000068 6.2e-07 58.2 43 60.5
AT2G32990 Arabidopsis thaliana HOM05D000120 ORTHO05D000068 8.1e-07 57.8 34 76.5
CARHR126940 Cardamine hirsuta HOM05D000120 ORTHO05D000068 8.1e-07 57.8 34 76.5
SEGI_06671 Sequoiadendron giganteum HOM05D000120 ORTHO05D000068 1.1e-06 57.4 35 68.6
Os04g0674800 Oryza sativa ssp. japonica HOM05D000120 ORTHO05D000068 1.4e-06 57.0 42 57.1
SEGI_37975 Sequoiadendron giganteum HOM05D000120 ORTHO05D000068 1.4e-06 57.0 47 51.1
Ah.12g053270 Amaranthus hybridus HOM05D001294 ORTHO05D001178 2.4e-06 56.2 46 52.2
EL10Ac5g12414 Beta vulgaris HOM05D000120 ORTHO05D000068 2.4e-06 56.2 53 47.2
AL120U10014 Arabidopsis lyrata HOM05D000120 ORTHO05D000068 3.1e-06 55.8 34 73.5
AL4G28540 Arabidopsis lyrata HOM05D000120 ORTHO05D000068 3.1e-06 55.8 34 73.5
Lsat_1_v5_gn_3_8520 Lactuca sativa HOM05D000120 ORTHO05D000068 3.1e-06 55.8 42 59.5
THA.LOC104811626 Tarenaya hassleriana HOM05D000120 ORTHO05D000068 3.1e-06 55.8 35 65.7
Carub.0004s1444 Capsella rubella HOM05D000120 ORTHO05D000068 4.0e-06 55.5 34 73.5
BcaB08g35342 Brassica carinata HOM05D000120 ORTHO05D000068 5.2e-06 55.1 32 75.0
BcaC04g20828 Brassica carinata HOM05D000120 ORTHO05D000068 5.2e-06 55.1 32 75.0
A10p08750 Brassica napus HOM05D000120 ORTHO05D000068 5.2e-06 55.1 32 75.0
C09p38730 Brassica napus HOM05D000120 ORTHO05D000068 5.2e-06 55.1 32 75.0
BolC9t56729H Brassica oleracea HOM05D000120 ORTHO05D000068 5.2e-06 55.1 32 75.0
BraSC37t46129Z Brassica rapa HOM05D000120 ORTHO05D000068 5.2e-06 55.1 32 75.0
Actinidia22210 Actinidia chinensis HOM05D000120 ORTHO05D000068 6.8e-06 54.7 49 44.9
BcaB02g10515 Brassica carinata HOM05D000120 ORTHO05D000068 6.8e-06 54.7 34 73.5
BcaC02g11366 Brassica carinata HOM05D000120 ORTHO05D000068 6.8e-06 54.7 34 73.5
A04p25390 Brassica napus HOM05D000120 ORTHO05D000068 6.8e-06 54.7 34 73.5
A05p12630 Brassica napus HOM05D000120 ORTHO05D000068 6.8e-06 54.7 34 73.5
C04p16520 Brassica napus HOM05D000120 ORTHO05D000068 6.8e-06 54.7 34 73.5
BolC4t23200H Brassica oleracea HOM05D000120 ORTHO05D000068 6.8e-06 54.7 34 73.5
BraA04t18042Z Brassica rapa HOM05D000120 ORTHO05D000068 6.8e-06 54.7 34 73.5
BraA05t20201Z Brassica rapa HOM05D000120 ORTHO05D000068 6.8e-06 54.7 34 73.5
CDE09G1268 Ceratophyllum demersum HOM05D000120 ORTHO05D000068 6.8e-06 54.7 66 42.4
Cc08_g13800 Coffea canephora HOM05D000120 ORTHO05D000068 6.8e-06 54.7 47 55.3
Migut.A00717 Erythranthe guttata HOM05D000120 ORTHO05D000068 6.8e-06 54.7 57 47.4
Eucgr.E01715 Eucalyptus grandis HOM05D000120 ORTHO05D000068 6.8e-06 54.7 65 44.6
Thhalv10016495m.g Eutrema salsugineum HOM05D000120 ORTHO05D000068 6.8e-06 54.7 34 73.5
Sp4g15350 Schrenkiella parvula HOM05D000120 ORTHO05D000068 6.8e-06 54.7 34 73.5
BcaC02g07869 Brassica carinata HOM05D000120 ORTHO05D000068 8.9e-06 54.3 34 73.5
FAN10G1497 Fragaria x ananassa HOM05D000120 ORTHO05D000068 8.9e-06 54.3 38 63.2
Nitab4.5_0000573g0040 Nicotiana tabacum HOM05D000120 ORTHO05D000068 8.9e-06 54.3 45 51.1


User provided reference genes

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