Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_19010_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 6.1e-263 910.2 445 100.0
Ca_20945_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 7.0e-251 870.2 449 95.8
Medtr4g075200 Medicago truncatula HOM05D001960 ORTHO05D007725 3.8e-236 821.2 450 90.9
TPR.G17186 Trifolium pratense HOM05D001960 ORTHO05D007725 1.4e-235 819.3 452 90.3
Psat7g177520 Pisum sativum HOM05D001960 ORTHO05D007725 5.1e-233 810.8 454 88.5
Lj3g0011182 Lotus japonicus HOM05D001960 ORTHO05D007725 1.7e-228 795.8 458 85.8
Phvul.011G027550 Phaseolus vulgaris HOM05D001960 ORTHO05D007725 7.1e-219 763.8 457 82.1
Glyma.11G099200 Glycine max HOM05D001960 ORTHO05D007725 1.2e-218 763.1 465 81.7
VMungo1127G2029 Vigna mungo HOM05D001960 ORTHO05D007725 6.7e-217 757.3 458 81.0
arahy.Tifrunner.gnm1.ann1.9ZMQ3R Arachis hypogaea HOM05D001960 ORTHO05D007725 1.5e-216 756.1 435 84.8
arahy.Tifrunner.gnm1.ann1.57V2RC Arachis hypogaea HOM05D001960 ORTHO05D007725 2.8e-215 751.9 435 84.4
Lalb_Chr19g0139461 Lupinus albus HOM05D001960 ORTHO05D007725 1.3e-212 743.0 422 84.6
Gohir.D04G050500 Gossypium hirsutum HOM05D001960 ORTHO05D007725 4.6e-210 734.6 425 81.2
Gorai.012G056000 Gossypium raimondii HOM05D001960 ORTHO05D007725 2.3e-209 732.3 425 80.9
QL02p080348 Quercus lobata HOM05D001960 ORTHO05D007725 4.3e-208 728.0 425 81.6
MELO3C021973.2 Cucumis melo HOM05D001960 ORTHO05D007725 6.9e-206 720.7 426 80.5
CsaV3_5G037870 Cucumis sativus L. HOM05D001960 ORTHO05D007725 6.9e-206 720.7 426 80.8
CANSAT64G2224 Cannabis sativa HOM05D001960 ORTHO05D007725 1.5e-205 719.5 429 80.0
Actinidia06068 Actinidia chinensis HOM05D001960 ORTHO05D007725 3.4e-205 718.4 422 80.6
CSS0036057 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 3.4e-205 718.4 426 79.6
Cfa007507 Carpinus fangiana HOM05D001960 ORTHO05D007725 7.6e-205 717.2 425 80.0
GSVIVG01032604001 Vitis vinifera HOM05D001960 ORTHO05D007725 1.4e-203 713.0 426 79.8
Potri.017G077000 Populus trichocarpa HOM05D001960 ORTHO05D007725 2.5e-203 712.2 426 79.8
Thecc.04G074100 Theobroma cacao HOM05D001960 ORTHO05D007725 2.5e-203 712.2 426 79.1
CiPaw.03G030400 Carya illinoinensis HOM05D001960 ORTHO05D007725 4.2e-203 711.4 426 79.3
TAR371G1229 Trochodendron aralioides HOM05D001960 ORTHO05D007725 5.5e-203 711.1 425 79.3
Manes.17G020800 Manihot esculenta HOM05D001960 ORTHO05D007725 2.7e-202 708.8 439 77.4
Sabra17G0069200 Salix brachista HOM05D001960 ORTHO05D007725 3.5e-202 708.4 426 79.1
Atru.chr8.1915 Acer truncatum HOM05D001960 ORTHO05D007725 4.6e-202 708.0 426 79.1
MD17G1046800 Malus domestica HOM05D001960 ORTHO05D007725 4.6e-202 708.0 423 80.1
Prupe.3G272300 Prunus persica HOM05D001960 ORTHO05D007725 4.6e-202 708.0 422 80.8
RcHm_v2.0_Chr2g0169211 Rosa chinensis HOM05D001960 ORTHO05D007725 7.9e-202 707.2 426 79.6
AL5G18340 Arabidopsis lyrata HOM05D001960 ORTHO05D007725 1.0e-201 706.8 423 78.0
Thhalv10004119m.g Eutrema salsugineum HOM05D001960 ORTHO05D007725 1.8e-201 706.1 429 76.9
Sed0013706 Sechium edule HOM05D001960 ORTHO05D007725 1.8e-201 706.1 426 79.1
Ciclev10011611m.g Citrus clementina HOM05D001960 ORTHO05D007725 5.1e-201 704.5 427 79.4
MSTRG.15488 Avicennia marina HOM05D001960 ORTHO05D007725 3.3e-200 701.8 423 79.0
CARHR286600 Cardamine hirsuta HOM05D001960 ORTHO05D007725 3.3e-200 701.8 423 77.8
MD09G1045900 Malus domestica HOM05D001960 ORTHO05D007725 3.3e-200 701.8 423 79.7
Eucgr.J02136 Eucalyptus grandis HOM05D001960 ORTHO05D007725 5.7e-200 701.0 425 76.9
THA.LOC104823928 Tarenaya hassleriana HOM05D001960 ORTHO05D007725 9.7e-200 700.3 423 79.4
BcaC06g33634 Brassica carinata HOM05D001960 ORTHO05D007725 1.6e-199 699.5 436 75.7
RhsimUnG0055000 Rhododendron simsii HOM05D001960 ORTHO05D007725 2.2e-199 699.1 426 78.2
Carub.0005s0723 Capsella rubella HOM05D001960 ORTHO05D007725 2.8e-199 698.7 420 77.4
C07p37650 Brassica napus HOM05D001960 ORTHO05D004348 3.7e-199 698.4 436 75.7
BolC7t44281H Brassica oleracea HOM05D001960 ORTHO05D007725 3.7e-199 698.4 436 75.7
AT3G28700 Arabidopsis thaliana HOM05D001960 ORTHO05D007725 6.3e-199 697.6 423 77.1
ClCG09G018410 Citrullus lanatus HOM05D001960 ORTHO05D007725 1.4e-198 696.4 453 74.6
A06p40400 Brassica napus HOM05D001960 ORTHO05D004348 1.8e-198 696.0 436 75.5
BraA06t26958Z Brassica rapa HOM05D001960 ORTHO05D004348 1.8e-198 696.0 436 75.5
Sed0024340 Sechium edule HOM05D001960 ORTHO05D007725 2.4e-198 695.7 425 76.7
Haze_14586 Corylus avellana HOM05D001960 ORTHO05D007725 3.1e-198 695.3 461 73.3
FvH4_6g49351 Fragaria vesca HOM05D001960 ORTHO05D007725 3.1e-198 695.3 425 77.9
Hma1.2p1_1232F.1_g268880 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 3.1e-198 695.3 425 77.4
BcaC06g30901 Brassica carinata HOM05D001960 ORTHO05D007725 5.3e-198 694.5 428 76.4
PGR083G0481 Punica granatum HOM05D001960 ORTHO05D007725 5.3e-198 694.5 429 78.6
AUR62031644 Chenopodium quinoa HOM05D001960 ORTHO05D007725 9.0e-198 693.7 427 76.3
Nitab4.5_0002265g0270 Nicotiana tabacum HOM05D001960 ORTHO05D007725 9.0e-198 693.7 429 76.2
TWI34G1416 Tripterygium wilfordii HOM05D001960 ORTHO05D007725 1.2e-197 693.3 443 75.6
Sp2g17340 Schrenkiella parvula HOM05D001960 ORTHO05D007725 2.0e-197 692.6 429 75.8
Cc01_g00810 Coffea canephora HOM05D001960 ORTHO05D007725 2.6e-197 692.2 432 75.9
CAN.G206.108 Capsicum annuum HOM05D001960 ORTHO05D007725 3.4e-197 691.8 423 76.8
Nn3g17123 Nelumbo nucifera HOM05D001960 ORTHO05D007725 3.4e-197 691.8 425 76.7
Nitab4.5_0000564g0320 Nicotiana tabacum HOM05D001960 ORTHO05D007725 4.5e-197 691.4 429 75.5
DCAR_006720 Daucus carota HOM05D001960 ORTHO05D007725 1.3e-196 689.9 466 71.9
SGA_v2.0_scaffold30G12523 Striga asiatica HOM05D001960 ORTHO05D007725 1.3e-196 689.9 429 76.5
Sopen02g032390 Solanum pennellii HOM05D001960 ORTHO05D007725 2.9e-196 688.7 423 75.7
Migut.K01335 Erythranthe guttata HOM05D001960 ORTHO05D007725 3.8e-196 688.3 427 76.8
Solyc02g087640.3 Solanum lycopersicum HOM05D001960 ORTHO05D007725 3.8e-196 688.3 423 75.7
Lsat_1_v5_gn_4_179920 Lactuca sativa HOM05D001960 ORTHO05D007725 5.0e-196 688.0 421 78.4
Hund13245 Selenicereus undatus HOM05D001960 ORTHO05D007725 6.5e-196 687.6 434 76.5
PGSC0003DMG400001411 Solanum tuberosum HOM05D001960 ORTHO05D007725 6.5e-196 687.6 425 76.0
FAN05G4054 Fragaria x ananassa HOM05D001960 ORTHO05D007725 8.5e-196 687.2 430 76.7
AUR62038879 Chenopodium quinoa HOM05D001960 ORTHO05D007725 2.5e-195 685.6 440 74.3
HanXRQChr09g0265611 Helianthus annuus HOM05D001960 ORTHO05D007725 9.4e-195 683.7 425 76.0
SalBow1G8169 Salvia bowleyana HOM05D001960 ORTHO05D007725 9.4e-195 683.7 425 76.5
Oeu060916.1 Olea europaea HOM05D001960 ORTHO05D007725 1.6e-194 682.9 424 76.2
Sc10g0003830 Simmondsia chinensis HOM05D001960 ORTHO05D007725 1.8e-193 679.5 422 77.0
Aa31LG2G4510 Aethionema arabicum HOM05D001960 ORTHO05D007725 2.3e-193 679.1 424 77.1
PSO832G0234 Papaver somniferum HOM05D001960 ORTHO05D007725 1.5e-192 676.4 421 77.4
Lj7A401T79 Lonicera japonica HOM05D001960 ORTHO05D007725 4.3e-192 674.9 444 74.1
EL10Ac2g03435 Beta vulgaris HOM05D001960 ORTHO05D007725 2.2e-191 672.5 425 76.9
Os01g0588800 Oryza sativa ssp. japonica HOM05D001960 ORTHO05D007725 4.8e-191 671.4 424 75.7
FAN14G4702 Fragaria x ananassa HOM05D001960 ORTHO05D007725 5.0e-188 661.4 405 77.5
Oeu033340.1 Olea europaea HOM05D001960 ORTHO05D007725 2.7e-186 655.6 407 76.4
Aqoxy3G03264 Aquilegia oxysepala HOM05D001960 ORTHO05D007725 4.7e-186 654.8 403 77.2
Gohir.A05G364200 Gossypium hirsutum HOM05D001960 ORTHO05D007725 1.4e-185 653.3 406 76.6
MBI15_g37231_MAGBIO Magnolia biondii HOM05D001960 ORTHO05D007725 3.0e-185 652.1 411 75.7
HPP92_022934 Vanilla planifolia HOM05D001960 ORTHO05D007725 3.1e-182 642.1 434 71.0
CSS0006137 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 1.2e-181 640.2 374 80.7
FAN02G2179 Fragaria x ananassa HOM05D001960 ORTHO05D007725 6.5e-180 634.4 482 66.0
ATR1120G150 Amborella trichopoda HOM05D001960 ORTHO05D007725 8.5e-180 634.0 428 71.3
vmacro05739 Vaccinium macrocarpon HOM05D001960 ORTHO05D007725 1.7e-175 619.8 424 72.2
Zm00001eb357440 Zea mays HOM05D001960 ORTHO05D007725 2.2e-175 619.4 421 70.1
C09p03940 Brassica napus HOM05D001960 ORTHO05D007725 8.2e-175 617.5 445 67.9
ECA232G3528 Erigeron canadensis HOM05D001960 ORTHO05D007725 4.1e-174 615.1 374 78.1
HPP92_022922 Vanilla planifolia HOM05D001960 ORTHO05D007725 6.5e-172 607.8 410 71.7
BolC9t53325H Brassica oleracea HOM05D001960 ORTHO05D007725 8.0e-170 600.9 419 69.5
COL.COLO4_25201 Corchorus olitorius HOM05D001960 ORTHO05D007725 1.4e-166 590.1 426 70.4
Ah.12g065370 Amaranthus hybridus HOM05D001960 ORTHO05D007725 2.4e-166 589.3 393 72.3
PSO591G0496 Papaver somniferum HOM05D001960 ORTHO05D007725 1.2e-165 587.0 424 69.8
SEGI_03019 Sequoiadendron giganteum HOM05D001960 ORTHO05D007725 1.2e-165 587.0 424 65.6
Dinv33716 Davidia involucrata HOM05D001960 ORTHO05D007725 5.2e-161 571.6 340 79.1
unitig_747.g21836 Utricularia gibba HOM05D001960 ORTHO05D007725 1.7e-159 566.6 409 68.0
Pp3c8_16780 Physcomitrium patens HOM05D001960 ORTHO05D007725 2.2e-159 566.2 439 61.5
Peaxi162Scf00129g00533 Petunia axillaris HOM05D001960 ORTHO05D007725 1.4e-158 563.5 388 69.3
ECA232G0063 Erigeron canadensis HOM05D001960 ORTHO05D007725 2.4e-158 562.8 374 73.5
BcaC04g23865 Brassica carinata HOM05D001960 ORTHO05D004348 2.3e-156 556.2 416 66.3
CDE05G2812 Ceratophyllum demersum HOM05D001960 ORTHO05D007725 3.1e-150 535.8 381 69.6
Mapoly0027s0012 Marchantia polymorpha HOM05D001960 ORTHO05D007725 1.0e-148 530.8 428 61.2
AagrBONN_evm.TU.Sc2ySwM_368.2217 Anthoceros agrestis HOM05D001960 ORTHO05D007725 2.0e-141 506.5 465 54.8
Dinv34989 Davidia involucrata HOM05D001960 ORTHO05D007725 1.5e-139 500.4 326 74.5
Ca_19017_v3 Cicer arietinum L. HOM05D000077 ORTHO05D002511 8.1e-130 468.0 351 70.9
C04p40510 Brassica napus HOM05D001960 ORTHO05D007725 3.9e-116 422.5 293 69.6
BolC4t25631H Brassica oleracea HOM05D001960 ORTHO05D007725 3.9e-116 422.5 293 69.6
Hma1.2p1_1232F.1_g268890 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 6.6e-116 421.8 248 79.0
SMO200G0063 Selaginella moellendorffii HOM05D001960 ORTHO05D007725 7.3e-115 418.3 390 53.8
C05p44890 Brassica napus HOM05D001960 ORTHO05D007725 3.6e-106 389.4 291 65.6
BcaC02g09250 Brassica carinata HOM05D001960 ORTHO05D007725 1.2e-101 374.4 262 69.8
C08p31240 Brassica napus HOM05D001960 ORTHO05D007725 3.0e-100 369.8 281 64.8
BolC8t50105H Brassica oleracea HOM05D001960 ORTHO05D007725 8.7e-100 368.2 268 68.3
C08p24890 Brassica napus HOM05D001960 ORTHO05D007725 8.1e-98 361.7 292 63.4
MCO09G443 Micromonas commoda HOM05D001960 ORTHO05D007725 4.8e-90 335.9 386 46.6
HPP92_022944 Vanilla planifolia HOM05D001960 ORTHO05D007725 1.2e-80 304.7 206 70.4
CBR_g40650 Chara braunii HOM05D001960 ORTHO05D007725 2.7e-77 293.5 336 45.5
Migut.K01334 Erythranthe guttata HOM05D001960 ORTHO05D007725 1.8e-73 280.8 175 76.6
Cre02.g096400 Chlamydomonas reinhardtii HOM05D001960 ORTHO05D007725 3.0e-68 263.5 580 32.6
SHI22231 Sapria himalayana HOM05D001960 ORTHO05D007725 1.1e-67 261.5 249 55.0
Cfa026330 Carpinus fangiana HOM05D001960 ORTHO05D007725 2.6e-51 207.2 473 33.8
Dinv34987 Davidia involucrata HOM05D001960 ORTHO05D007725 2.7e-45 187.2 110 80.0
Actinidia23575 Actinidia chinensis HOM05D001960 ORTHO05D007725 1.6e-37 161.4 114 69.3
Hma1.2p1_1232F.1_g268870 Hydrangea macrophylla HOM05D001960 ORTHO05D014729 6.3e-34 149.4 85 80.0
AUR62031616 Chenopodium quinoa HOM05D000372 ORTHO05D002769 4.3e-30 136.7 78 76.9
Dinv06509 Davidia involucrata HOM05D001960 ORTHO05D014729 3.4e-27 127.1 99 64.6
CDE05G0334 Ceratophyllum demersum HOM05D000115 ORTHO05D000645 2.3e-20 104.4 58 77.6
A05p31150 Brassica napus HOM05D001960 ORTHO05D033473 4.0e-20 103.6 74 67.6
A01p26160 Brassica napus HOM05D001960 ORTHO05D014930 6.8e-20 102.8 67 73.1
A05p31140 Brassica napus HOM05D001960 ORTHO05D042754 6.8e-20 102.8 93 59.1
C04p14730 Brassica napus HOM05D001960 ORTHO05D014930 6.8e-20 102.8 67 73.1
BraA02t06070Z Brassica rapa HOM05D001960 ORTHO05D014930 6.8e-20 102.8 67 73.1
BcaC02g11495 Brassica carinata HOM05D001960 ORTHO05D014930 8.9e-20 102.4 66 74.2
BraA05t21956Z Brassica rapa HOM05D001960 ORTHO05D042754 8.9e-20 102.4 90 58.9
C07p16020 Brassica napus HOM05D001960 ORTHO05D014930 1.2e-19 102.1 94 56.4
BolC3t20150H Brassica oleracea HOM05D001960 ORTHO05D014930 1.2e-19 102.1 67 73.1
BolC5t33816H Brassica oleracea HOM05D001960 ORTHO05D014930 5.8e-19 99.8 67 70.1
BcaC05g28941 Brassica carinata HOM05D001960 ORTHO05D014930 7.5e-19 99.4 66 71.2
C07p16060 Brassica napus HOM05D001960 ORTHO05D021151 9.8e-19 99.0 67 70.1
HPP92_017638 Vanilla planifolia HOM05D003031 ORTHO05D003371 2.1e-16 91.3 53 75.5
Medtr5g075800 Medicago truncatula HOM05D001960 ORTHO05D258834 3.3e-14 84.0 87 55.2
HPP92_003669 Vanilla planifolia HOM05D001960 ORTHO05D007725 4.7e-13 80.1 69 59.4
GSVIVG01021633001 Vitis vinifera HOM05D001960 ORTHO05D439898 3.5e-08 63.9 43 69.8
Dinv25076 Davidia involucrata HOM05D001960 ORTHO05D033473 1.7e-07 61.6 41 70.7
Actinidia27488 Actinidia chinensis HOM05D001960 ORTHO05D058277 8.6e-07 59.3 33 78.8


User provided reference genes

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