Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_19008_v3 Cicer arietinum L. HOM05D007212 ORTHO05D009094 7.8e-58 229.6 114 100.0
Psat7g177640 Pisum sativum HOM05D007212 ORTHO05D009094 8.3e-52 209.5 113 91.2
TPR.G17150 Trifolium pratense HOM05D007212 ORTHO05D009094 7.8e-50 203.0 113 87.6
Lalb_Chr01g0001381 Lupinus albus HOM05D007212 ORTHO05D009094 2.3e-49 201.4 112 87.5
Medtr4g075270 Medicago truncatula HOM05D007212 ORTHO05D009094 3.3e-48 197.6 111 87.4
arahy.Tifrunner.gnm1.ann1.C93D89 Arachis hypogaea HOM05D007212 ORTHO05D009094 6.8e-46 189.9 114 83.3
Phvul.011G027200 Phaseolus vulgaris HOM05D007212 ORTHO05D009094 8.9e-46 189.5 114 81.6
Lj3g0025740 Lotus japonicus HOM05D007212 ORTHO05D009094 9.9e-45 186.0 112 82.1
arahy.Tifrunner.gnm1.ann1.0V2A2H Arachis hypogaea HOM05D007212 ORTHO05D009094 1.3e-44 185.7 110 83.6
VMungo1127G0797 Vigna mungo HOM05D007212 ORTHO05D009094 3.6e-31 141.0 80 86.2
Glyma.11G098900 Glycine max HOM05D007212 ORTHO05D009094 1.5e-29 135.6 77 83.1
FAN21G0605 Fragaria x ananassa HOM05D007212 ORTHO05D009094 1.3e-28 132.5 109 60.6
Migut.G01107 Erythranthe guttata HOM05D007212 ORTHO05D009094 5.6e-24 117.1 112 58.9
Migut.G01143 Erythranthe guttata HOM05D007212 ORTHO05D009094 2.1e-23 115.2 110 59.1
Potri.001G236800 Populus trichocarpa HOM05D007212 ORTHO05D009094 2.8e-23 114.8 106 56.6
FAN03G3455 Fragaria x ananassa HOM05D007212 ORTHO05D009094 4.8e-23 114.0 96 58.3
PSO339G3988 Papaver somniferum HOM05D007212 ORTHO05D009094 4.8e-23 114.0 115 53.9
Oeu041026.1 Olea europaea HOM05D007212 ORTHO05D009094 8.1e-23 113.2 110 51.8
HanXRQChr08g0227881 Helianthus annuus HOM05D007212 ORTHO05D009094 5.3e-22 110.5 117 50.4
Migut.D02115 Erythranthe guttata HOM05D007212 ORTHO05D009094 9.0e-22 109.8 113 56.6
DCAR_015608 Daucus carota HOM05D007212 ORTHO05D009094 3.8e-20 104.4 104 51.0
CiPaw.14G071200 Carya illinoinensis HOM05D007212 ORTHO05D009094 1.2e-18 99.4 82 62.2
ATR0580G451 Amborella trichopoda HOM05D007212 ORTHO05D009094 3.5e-18 97.8 114 47.4
Eucgr.J02064 Eucalyptus grandis HOM05D007212 ORTHO05D009094 3.5e-18 97.8 108 48.1
FAN21G2645 Fragaria x ananassa HOM05D007212 ORTHO05D009094 1.8e-17 95.5 79 58.2
FAN27G2961 Fragaria x ananassa HOM05D007212 ORTHO05D009094 1.8e-17 95.5 79 58.2
FAN28G1733 Fragaria x ananassa HOM05D007212 ORTHO05D009094 1.8e-17 95.5 79 58.2
Prupe.6G082100 Prunus persica HOM05D007212 ORTHO05D009094 2.3e-17 95.1 78 60.3
Haze_24045 Corylus avellana HOM05D007212 ORTHO05D009094 5.6e-16 90.5 74 63.5
FvH4_3g35360 Fragaria vesca HOM05D007212 ORTHO05D009094 5.6e-16 90.5 77 57.1
FAN11G2747 Fragaria x ananassa HOM05D007212 ORTHO05D009094 5.6e-16 90.5 77 57.1
Sed0018920 Sechium edule HOM05D007212 ORTHO05D009094 5.6e-16 90.5 77 62.3
FAN06G0240 Fragaria x ananassa HOM05D007212 ORTHO05D009094 7.4e-16 90.1 78 55.1
FAN03G0763 Fragaria x ananassa HOM05D007212 ORTHO05D009094 9.6e-16 89.7 83 51.8
FAN21G3687 Fragaria x ananassa HOM05D007212 ORTHO05D009094 9.6e-16 89.7 78 56.4
Nitab4.5_0003782g0040 Nicotiana tabacum HOM05D007212 ORTHO05D009094 1.6e-15 89.0 80 52.5
Glyma.12G024900 Glycine max HOM05D007212 ORTHO05D009094 2.1e-15 88.6 48 85.4
Cpa.g.sc190.19 Carica papaya HOM05D007212 ORTHO05D009094 2.8e-15 88.2 77 57.1
Cfa011459 Carpinus fangiana HOM05D007212 ORTHO05D009094 3.7e-15 87.8 68 64.7
FAN16G0386 Fragaria x ananassa HOM05D007212 ORTHO05D009094 3.7e-15 87.8 77 55.8
MD11G1144200 Malus domestica HOM05D007212 ORTHO05D009094 1.4e-14 85.9 74 55.4
Lsat_1_v5_gn_9_22380 Lactuca sativa HOM05D007212 ORTHO05D009094 1.2e-13 82.8 78 47.4
Gohir.A03G039400 Gossypium hirsutum HOM05D007212 ORTHO05D009094 2.0e-13 82.0 75 54.7
Gohir.D03G128800 Gossypium hirsutum HOM05D007212 ORTHO05D009094 2.6e-13 81.6 74 56.8
Gorai.003G135500 Gossypium raimondii HOM05D007212 ORTHO05D009094 2.6e-13 81.6 74 56.8
AUR62040786 Chenopodium quinoa HOM05D001653 ORTHO05D001751 3.4e-13 81.3 88 47.7
SalBow3G0436 Salvia bowleyana HOM05D007212 ORTHO05D009094 3.4e-13 81.3 77 54.5
Sabra16G0142600 Salix brachista HOM05D007212 ORTHO05D009094 7.6e-13 80.1 76 53.9
PGR119G1050 Punica granatum HOM05D007212 ORTHO05D009094 8.4e-12 76.6 50 76.0
PGR142G1175 Punica granatum HOM05D007212 ORTHO05D009094 8.4e-12 76.6 50 76.0
Sc09g0001880 Simmondsia chinensis HOM05D007212 ORTHO05D009094 2.5e-11 75.1 80 51.2
QL01p032998 Quercus lobata HOM05D007212 ORTHO05D009094 3.2e-11 74.7 48 72.9
Dinv32867 Davidia involucrata HOM05D007212 ORTHO05D009094 4.2e-11 74.3 46 76.1
Cpa.g.sc190.20 Carica papaya HOM05D007212 ORTHO05D009094 1.2e-10 72.8 50 70.0
BcaC04g19649 Brassica carinata HOM05D007212 ORTHO05D009094 2.1e-10 72.0 50 66.0
C09p52430 Brassica napus HOM05D007212 ORTHO05D009094 2.1e-10 72.0 50 66.0
BolC9t58111H Brassica oleracea HOM05D007212 ORTHO05D009094 2.1e-10 72.0 50 66.0
Manes.01G128700 Manihot esculenta HOM05D007212 ORTHO05D009094 2.1e-10 72.0 48 66.7
Thecc.09G326300 Theobroma cacao HOM05D007212 ORTHO05D009094 2.1e-10 72.0 48 72.9
ATR1127G166 Amborella trichopoda HOM05D007358 ORTHO05D009117 3.5e-10 71.2 96 35.4
Zm00001eb123970 Zea mays HOM05D067512 ORTHO05D050092 3.5e-10 71.2 95 38.9
EL10Ac6g14029 Beta vulgaris HOM05D007212 ORTHO05D009094 4.6e-10 70.9 50 68.0
AL8G36470 Arabidopsis lyrata HOM05D007212 ORTHO05D009094 7.9e-10 70.1 51 60.8
BcaB08g36211 Brassica carinata HOM05D007212 ORTHO05D009094 7.9e-10 70.1 49 65.3
TWI79G1118 Tripterygium wilfordii HOM05D007212 ORTHO05D009094 7.9e-10 70.1 51 64.7
GSVIVG01025017001 Vitis vinifera HOM05D007212 ORTHO05D009094 7.9e-10 70.1 50 66.0
Hma1.2p1_0624F.1_g191340 Hydrangea macrophylla HOM05D007212 ORTHO05D009094 1.0e-09 69.7 65 53.8
Sp6g21610 Schrenkiella parvula HOM05D007212 ORTHO05D009094 1.0e-09 69.7 51 62.7
A10p17130 Brassica napus HOM05D007212 ORTHO05D009094 1.3e-09 69.3 51 62.7
BraA10t43795Z Brassica rapa HOM05D007212 ORTHO05D009094 1.3e-09 69.3 51 62.7
vmacro03100 Vaccinium macrocarpon HOM05D007212 ORTHO05D009094 3.0e-09 68.2 47 72.3
AT5G59900 Arabidopsis thaliana HOM05D007212 ORTHO05D009094 3.9e-09 67.8 50 60.0
CDE09G0292 Ceratophyllum demersum HOM05D007212 ORTHO05D009094 3.9e-09 67.8 48 68.8
vmacro19175 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 3.9e-09 67.8 97 36.1
Thhalv10016210m.g Eutrema salsugineum HOM05D007212 ORTHO05D009094 5.1e-09 67.4 49 61.2
Ah.02g128350 Amaranthus hybridus HOM05D007212 ORTHO05D009094 6.7e-09 67.0 50 64.0
CAN.G764.6 Capsicum annuum HOM05D007212 ORTHO05D009094 6.7e-09 67.0 50 62.0
THA.LOC104814860 Tarenaya hassleriana HOM05D007212 ORTHO05D009094 6.7e-09 67.0 47 66.0
HPP92_021332 Vanilla planifolia HOM05D007212 ORTHO05D000003 8.7e-09 66.6 51 58.8
MSTRG.21188 Avicennia marina HOM05D007212 ORTHO05D009094 1.1e-08 66.2 46 69.6
CSS0026864 Camellia sinensis var. sinensis HOM05D007212 ORTHO05D009094 1.1e-08 66.2 46 69.6
Solyc11g073270.1 Solanum lycopersicum HOM05D007212 ORTHO05D009094 1.5e-08 65.9 48 64.6
Sopen11g030900 Solanum pennellii HOM05D007212 ORTHO05D009094 1.5e-08 65.9 48 64.6
MBI05_g28547_MAGBIO Magnolia biondii HOM05D007212 ORTHO05D009094 1.9e-08 65.5 48 64.6
Atru.chr5.563 Acer truncatum HOM05D003900 ORTHO05D005009 3.3e-08 64.7 111 29.7
Atru.chr5.581 Acer truncatum HOM05D003900 ORTHO05D005009 5.7e-08 63.9 111 29.7
MELO3C035453.2 Cucumis melo HOM05D007212 ORTHO05D009094 7.4e-08 63.5 48 68.8
ECA247G1906 Erigeron canadensis HOM05D007212 ORTHO05D009094 9.7e-08 63.2 43 72.1
Actinidia07048 Actinidia chinensis HOM05D007212 ORTHO05D009094 1.6e-07 62.4 48 64.6
MD07G1131300 Malus domestica HOM05D003900 ORTHO05D005009 1.6e-07 62.4 111 29.7
Nitab4.5_0000610g0130 Nicotiana tabacum HOM05D007212 ORTHO05D009094 2.8e-07 61.6 54 55.6
RcHm_v2.0_Chr5g0063471 Rosa chinensis HOM05D007212 ORTHO05D009094 4.8e-07 60.8 40 67.5
CARHR273510 Cardamine hirsuta HOM05D007212 ORTHO05D009094 8.2e-07 60.1 46 60.9
Rhsim13G0085700 Rhododendron simsii HOM05D007212 ORTHO05D009094 8.2e-07 60.1 40 70.0
BcaC05g26202 Brassica carinata HOM05D007426 ORTHO05D009167 1.1e-06 59.7 108 31.5
BolC5t30906H Brassica oleracea HOM05D007426 ORTHO05D009167 1.1e-06 59.7 108 31.5
Prupe.7G119000 Prunus persica HOM05D007410 ORTHO05D009500 1.1e-06 59.7 97 30.9
HPP92_009300 Vanilla planifolia HOM05D017260 ORTHO05D014237 1.1e-06 59.7 98 31.6
Carub.0008s2053 Capsella rubella HOM05D007212 ORTHO05D009094 1.8e-06 58.9 43 60.5
Lj1A206G45 Lonicera japonica HOM05D007212 ORTHO05D009094 1.8e-06 58.9 36 75.0
SGA_v2.0_scaffold134G34680 Striga asiatica HOM05D007212 ORTHO05D009094 3.1e-06 58.2 40 62.5
Aqoxy4G02992 Aquilegia oxysepala HOM05D007212 ORTHO05D009094 4.1e-06 57.8 41 65.9
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 4.1e-06 57.8 111 29.7
CsaV3_5G006140 Cucumis sativus L. HOM05D005764 ORTHO05D006600 4.1e-06 57.8 97 30.9
Dinv43863 Davidia involucrata HOM05D003900 ORTHO05D005009 4.1e-06 57.8 99 30.3
Prupe.2G177500 Prunus persica HOM05D003900 ORTHO05D005009 4.1e-06 57.8 109 27.5
MSTRG.1303 Avicennia marina HOM05D007639 ORTHO05D009509 5.3e-06 57.4 83 33.7
FAN04G0755 Fragaria x ananassa HOM05D003900 ORTHO05D005009 5.3e-06 57.4 101 27.7
Medtr8g098755 Medicago truncatula HOM05D003900 ORTHO05D005009 6.9e-06 57.0 105 28.6
Rhsim07G0010500 Rhododendron simsii HOM05D003900 ORTHO05D005009 6.9e-06 57.0 97 29.9
SalBow7G4426 Salvia bowleyana HOM05D007639 ORTHO05D009509 9.0e-06 56.6 103 28.2


User provided reference genes

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