Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 2.2e-157 558.9 288 100.0
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 2.0e-150 535.8 287 97.9
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 1.5e-132 476.5 289 87.9
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 5.6e-132 474.6 289 89.3
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 2.0e-129 466.1 287 86.1
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 5.8e-113 411.4 288 76.4
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 4.3e-108 395.2 288 73.3
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 9.6e-108 394.0 281 75.1
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 1.6e-107 393.3 288 74.3
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 2.8e-107 392.5 281 74.7
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 2.5e-100 369.4 280 67.5
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 7.9e-94 347.8 267 70.4
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 1.0e-93 347.4 269 66.2
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 1.8e-93 346.7 264 71.6
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 9.0e-90 334.3 312 63.5
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 8.7e-85 317.8 290 60.0
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 3.4e-81 305.8 297 58.6
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 4.5e-81 305.4 280 61.1
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 1.0e-80 304.3 290 59.7
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 2.2e-80 303.1 266 61.3
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 3.8e-80 302.4 281 58.4
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 1.1e-79 300.8 283 60.1
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 1.1e-79 300.8 285 58.2
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 1.6e-78 297.0 254 61.4
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 1.6e-78 297.0 281 56.9
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 1.6e-78 297.0 282 56.7
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 4.6e-78 295.4 285 56.5
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 6.1e-78 295.0 282 56.4
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 1.3e-77 293.9 282 56.4
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.8e-77 293.5 263 61.2
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 3.3e-76 289.3 276 57.6
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 3.3e-76 289.3 272 58.1
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 5.7e-76 288.5 262 61.1
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 1.3e-75 287.3 287 55.7
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.6e-75 287.0 287 55.1
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.6e-75 287.0 287 55.1
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 2.2e-75 286.6 285 58.2
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 3.7e-75 285.8 290 55.2
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 4.8e-75 285.4 252 58.7
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 1.4e-74 283.9 284 56.7
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 4.1e-74 282.3 285 56.1
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 9.0e-74 281.2 280 55.0
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 9.0e-74 281.2 273 56.8
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 3.8e-72 275.8 273 56.0
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 5.0e-72 275.4 287 54.4
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 5.0e-72 275.4 264 59.1
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 8.5e-72 274.6 283 53.7
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 1.1e-71 274.2 250 58.0
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 9.4e-71 271.2 248 58.9
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 1.6e-70 270.4 285 51.6
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 2.1e-70 270.0 284 52.5
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 6.1e-70 268.5 272 58.1
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 7.9e-70 268.1 287 52.3
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 8.8e-69 264.6 289 53.6
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 4.4e-68 262.3 284 53.2
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 9.7e-68 261.2 258 55.8
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 2.8e-67 259.6 280 55.0
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 3.7e-67 259.2 287 52.6
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 3.7e-67 259.2 284 52.5
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 4.8e-67 258.8 305 52.1
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 9.1e-66 254.6 276 53.3
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 3.4e-65 252.7 247 56.7
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 5.9e-65 251.9 283 50.5
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 5.9e-65 251.9 284 53.9
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 1.0e-64 251.1 280 49.3
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 1.3e-64 250.8 270 48.5
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 2.2e-64 250.0 283 51.2
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 3.8e-64 249.2 288 50.3
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 8.5e-64 248.1 282 49.3
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 8.5e-64 248.1 283 50.2
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 1.1e-63 247.7 281 51.6
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 1.1e-63 247.7 282 48.9
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 4.2e-63 245.7 278 50.0
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 5.5e-63 245.4 284 47.5
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 2.1e-62 243.4 279 48.4
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 2.1e-62 243.4 284 49.6
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 2.7e-62 243.0 287 48.1
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 7.9e-62 241.5 284 46.5
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 1.0e-61 241.1 284 48.9
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 1.4e-61 240.7 284 47.9
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 1.8e-61 240.4 285 47.7
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 3.0e-61 239.6 284 49.3
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 8.8e-61 238.0 285 48.4
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 1.5e-60 237.3 284 47.5
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 2.6e-60 236.5 284 46.5
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 4.4e-60 235.7 262 49.2
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 5.7e-60 235.3 289 46.7
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 7.4e-60 235.0 281 48.4
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 1.7e-59 233.8 275 45.8
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 2.8e-59 233.0 285 48.4
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 3.7e-59 232.6 286 49.7
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 4.8e-59 232.3 289 46.0
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 4.8e-59 232.3 286 44.4
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 8.2e-59 231.5 284 46.8
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 8.2e-59 231.5 287 45.6
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 8.2e-59 231.5 286 45.1
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 8.2e-59 231.5 286 45.1
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 8.2e-59 231.5 286 45.1
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 8.2e-59 231.5 286 47.6
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 1.1e-58 231.1 285 46.3
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 1.1e-58 231.1 287 46.0
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 1.1e-58 231.1 287 46.3
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 1.1e-58 231.1 286 46.5
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 1.1e-58 231.1 287 46.0
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 1.1e-58 231.1 287 46.3
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 1.1e-58 231.1 286 46.5
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 1.8e-58 230.3 286 48.3
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 2.4e-58 229.9 284 45.4
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 2.4e-58 229.9 279 47.0
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 3.1e-58 229.6 287 46.3
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 5.3e-58 228.8 293 47.8
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 3.5e-57 226.1 285 44.9
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 3.5e-57 226.1 283 44.9
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 4.5e-57 225.7 325 47.4
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 7.7e-57 224.9 286 46.9
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 1.0e-56 224.6 287 43.9
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 1.0e-56 224.6 287 43.9
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 1.0e-56 224.6 287 43.9
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 1.0e-56 224.6 284 45.4
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 1.0e-56 224.6 229 52.0
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 8.5e-56 221.5 283 45.6
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 1.9e-55 220.3 282 45.4
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 2.5e-55 219.9 229 51.1
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 4.2e-55 219.2 283 47.0
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 5.5e-55 218.8 285 44.9
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 8.0e-54 214.9 286 44.1
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 8.0e-54 214.9 285 44.2
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 6.7e-53 211.8 282 44.3
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 5.7e-52 208.8 285 43.2
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 9.7e-52 208.0 381 38.3
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 2.8e-51 206.5 229 48.0
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 4.8e-51 205.7 286 44.1
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 6.5e-48 195.3 283 40.3
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 1.4e-45 187.6 289 41.5
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 5.2e-45 185.7 281 40.6
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 1.4e-42 177.6 168 54.2
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 7.7e-41 171.8 245 38.8
RcHm_v2.0_Chr4g0398051 Rosa chinensis HOM05D004300 ORTHO05D005171 1.0e-37 161.4 164 54.3
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 7.5e-36 155.2 170 53.5
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 5.2e-29 132.5 159 49.1
Medtr1g055145 Medicago truncatula HOM05D004300 ORTHO05D005171 1.5e-28 131.0 86 77.9
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 2.0e-28 130.6 178 45.5
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 8.3e-27 125.2 185 41.1
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 7.3e-23 112.1 135 42.2
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 2.1e-22 110.5 135 41.5
Mapoly0001s0434 Marchantia polymorpha HOM05D004300 ORTHO05D005171 3.1e-21 106.7 286 29.0
Potri.008G223987 Populus trichocarpa HOM05D004300 ORTHO05D005171 2.2e-19 100.5 115 52.2
Pp3c14_9560 Physcomitrium patens HOM05D004300 ORTHO05D005171 6.4e-19 99.0 285 29.8
Pp3c1_26860 Physcomitrium patens HOM05D004300 ORTHO05D005171 8.3e-19 98.6 284 30.6
AT1G55546 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 6.0e-17 92.4 105 52.4
Zm00001eb363780 Zea mays HOM05D004300 ORTHO05D005171 1.5e-15 87.8 80 53.8
Potri.012G124888 Populus trichocarpa HOM05D004300 ORTHO05D005171 2.5e-15 87.0 87 56.3
Zm00001eb043250 Zea mays HOM05D004300 ORTHO05D005171 3.3e-15 86.7 74 54.1
Zm00001eb387380 Zea mays HOM05D004300 ORTHO05D005171 3.3e-15 86.7 74 54.1
Zm00001eb080660 Zea mays HOM05D004300 ORTHO05D005171 1.2e-14 84.7 83 50.6
FAN02G4318 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.6e-14 84.3 78 59.0
FAN17G1476 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.6e-14 84.3 78 59.0
SMO134G0100 Selaginella moellendorffii HOM05D004300 ORTHO05D005171 2.3e-13 80.5 287 26.8
FAN20G0894 Fragaria x ananassa HOM05D004300 ORTHO05D005171 8.9e-13 78.6 92 50.0
Actinidia00920 Actinidia chinensis HOM05D004300 ORTHO05D038087 5.4e-10 69.3 122 41.0
Glyma.03G121400 Glycine max HOM05D004300 ORTHO05D005171 4.3e-07 59.7 37 75.7
Zm00001eb132370 Zea mays HOM05D004300 ORTHO05D005171 3.6e-06 56.6 131 32.1


User provided reference genes

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