Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_18965_v3 Cicer arietinum L. HOM05D001846 ORTHO05D005785 2.2e-248 862.1 509 100.0
Medtr4g077160 Medicago truncatula HOM05D001846 ORTHO05D005785 5.3e-178 628.2 476 77.5
Lj3g0017471 Lotus japonicus HOM05D001846 ORTHO05D005785 1.0e-173 614.0 472 73.9
VMungo1127G1936 Vigna mungo HOM05D001846 ORTHO05D005785 8.0e-166 587.8 482 70.5
Psat7g170880 Pisum sativum HOM05D001846 ORTHO05D005785 7.7e-161 571.2 470 72.8
Lj3g0008415 Lotus japonicus HOM05D001846 ORTHO05D005785 1.1e-159 567.4 473 71.2
Lj3g0026618 Lotus japonicus HOM05D001846 ORTHO05D005785 1.1e-159 567.4 473 71.2
Phvul.011G021900 Phaseolus vulgaris HOM05D001846 ORTHO05D005785 4.0e-157 558.9 467 70.0
Glyma.11G093300 Glycine max HOM05D001846 ORTHO05D005785 2.8e-155 552.7 486 67.3
Glyma.12G019500 Glycine max HOM05D001846 ORTHO05D005785 6.6e-144 515.0 468 66.9
Lalb_Chr19g0139851 Lupinus albus HOM05D001846 ORTHO05D005785 2.2e-139 500.0 438 67.6
QL01p004435 Quercus lobata HOM05D001846 ORTHO05D005785 2.4e-122 443.4 480 56.0
QL01p004534 Quercus lobata HOM05D001846 ORTHO05D005785 1.0e-120 438.0 480 55.6
Cfa009785 Carpinus fangiana HOM05D001846 ORTHO05D005785 7.8e-113 411.8 483 56.7
TAR369G0438 Trochodendron aralioides HOM05D001846 ORTHO05D005785 1.5e-111 407.5 527 51.2
TWI60G1588 Tripterygium wilfordii HOM05D001846 ORTHO05D005785 2.8e-110 403.3 482 54.1
Atru.chr3.2697 Acer truncatum HOM05D001846 ORTHO05D005785 1.1e-109 401.4 481 51.8
Haze_23151 Corylus avellana HOM05D001846 ORTHO05D005785 1.1e-109 401.4 503 53.9
Thecc.09G236100 Theobroma cacao HOM05D001846 ORTHO05D005785 3.4e-108 396.4 477 53.7
arahy.Tifrunner.gnm1.ann1.8PYD8T Arachis hypogaea HOM05D001846 ORTHO05D005785 6.4e-107 392.1 456 57.5
arahy.Tifrunner.gnm1.ann1.563I02 Arachis hypogaea HOM05D001846 ORTHO05D005785 5.4e-106 389.0 456 58.6
TAR369G0720 Trochodendron aralioides HOM05D001846 ORTHO05D005785 9.3e-106 388.3 527 52.2
Thecc.09G235700 Theobroma cacao HOM05D001846 ORTHO05D005785 2.5e-103 380.2 449 55.7
Ciclev10014939m.g Citrus clementina HOM05D001846 ORTHO05D005785 1.3e-102 377.9 472 50.2
CiPaw.14G118000 Carya illinoinensis HOM05D001846 ORTHO05D005785 2.8e-102 376.7 407 57.5
Duzib150G0388 Durio zibethinus HOM05D001846 ORTHO05D005785 5.3e-101 372.5 478 51.0
MD11G1191400 Malus domestica HOM05D001846 ORTHO05D005785 1.2e-100 371.3 474 52.7
CiPaw.13G159200 Carya illinoinensis HOM05D001846 ORTHO05D005785 1.5e-100 370.9 466 51.5
GSVIVG01025241001 Vitis vinifera HOM05D001846 ORTHO05D005785 2.9e-99 366.7 466 49.1
Dinv36247 Davidia involucrata HOM05D001846 ORTHO05D005785 1.3e-96 357.8 478 48.1
FvH4_3g28690 Fragaria vesca HOM05D001846 ORTHO05D005785 7.4e-95 352.1 465 52.5
Manes.14G003700 Manihot esculenta HOM05D001846 ORTHO05D005785 7.4e-95 352.1 476 48.5
Sabra09G0038200 Salix brachista HOM05D001846 ORTHO05D005785 6.2e-94 349.0 513 46.8
RcHm_v2.0_Chr5g0052391 Rosa chinensis HOM05D001846 ORTHO05D005785 2.4e-93 347.1 469 51.6
Manes.06G163200 Manihot esculenta HOM05D001846 ORTHO05D005785 3.1e-93 346.7 471 48.2
Duzib168G1640 Durio zibethinus HOM05D001846 ORTHO05D005785 6.9e-93 345.5 491 48.1
Prupe.4G251400 Prunus persica HOM05D001846 ORTHO05D005785 2.6e-92 343.6 468 51.1
Potri.001G256700 Populus trichocarpa HOM05D001846 ORTHO05D005785 1.3e-91 341.3 466 49.4
CANSAT54G0460 Cannabis sativa HOM05D001846 ORTHO05D005785 3.8e-91 339.7 479 48.0
Cpa.g.sc84.42 Carica papaya HOM05D001846 ORTHO05D005785 3.8e-91 339.7 516 45.7
Sabra16G0155900 Salix brachista HOM05D001846 ORTHO05D005785 8.4e-91 338.6 391 52.9
FAN21G3148 Fragaria x ananassa HOM05D001846 ORTHO05D005785 2.5e-90 337.0 468 49.6
FAN16G0902 Fragaria x ananassa HOM05D001846 ORTHO05D005785 9.3e-90 335.1 499 46.7
Eucgr.J00759 Eucalyptus grandis HOM05D001846 ORTHO05D005785 1.3e-88 331.3 480 45.2
Gohir.D13G220500 Gossypium hirsutum HOM05D001846 ORTHO05D005785 2.3e-88 330.5 468 44.2
PGR119G1478 Punica granatum HOM05D001846 ORTHO05D005785 3.9e-88 329.7 484 48.8
FAN11G2083 Fragaria x ananassa HOM05D001846 ORTHO05D005785 6.7e-88 328.9 474 49.8
Potri.009G052400 Populus trichocarpa HOM05D001846 ORTHO05D005785 2.8e-86 323.6 515 44.7
MD03G1173500 Malus domestica HOM05D001846 ORTHO05D005785 2.6e-84 317.0 469 49.3
Hma1.2p1_1313F.1_g274970 Hydrangea macrophylla HOM05D001846 ORTHO05D005785 3.2e-82 310.1 495 45.3
Dinv22169 Davidia involucrata HOM05D001846 ORTHO05D005785 1.2e-81 308.1 416 48.6
Actinidia16341 Actinidia chinensis HOM05D001846 ORTHO05D005785 2.8e-78 297.0 465 41.9
FAN25G3740 Fragaria x ananassa HOM05D001846 ORTHO05D005785 3.7e-78 296.6 439 50.1
Gorai.013G251400 Gossypium raimondii HOM05D001846 ORTHO05D005785 6.3e-78 295.8 522 39.5
HanXRQChr13g0401091 Helianthus annuus HOM05D001846 ORTHO05D005785 1.4e-77 294.7 511 41.7
Actinidia06915 Actinidia chinensis HOM05D001846 ORTHO05D005785 3.1e-77 293.5 337 53.4
Sc16g0011440 Simmondsia chinensis HOM05D001846 ORTHO05D005785 2.6e-76 290.4 432 45.1
COL.COLO4_06126 Corchorus olitorius HOM05D001846 ORTHO05D005785 1.3e-75 288.1 350 53.1
Sopen11g025350 Solanum pennellii HOM05D001846 ORTHO05D005785 2.2e-75 287.3 469 44.8
Gohir.D09G110300 Gossypium hirsutum HOM05D001846 ORTHO05D005785 8.5e-75 285.4 476 44.1
Aqoxy2G00165 Aquilegia oxysepala HOM05D001846 ORTHO05D005785 1.9e-74 284.3 466 43.1
AUR62000135 Chenopodium quinoa HOM05D001846 ORTHO05D005785 9.4e-74 282.0 528 41.7
Solyc11g065630.3 Solanum lycopersicum HOM05D001846 ORTHO05D005785 2.7e-73 280.4 469 44.1
AUR62019315 Chenopodium quinoa HOM05D001846 ORTHO05D005785 3.6e-73 280.0 467 42.4
Lj1A326G19 Lonicera japonica HOM05D001846 ORTHO05D005785 1.0e-72 278.5 464 44.2
Gorai.006G127900 Gossypium raimondii HOM05D001846 ORTHO05D005785 1.4e-72 278.1 476 43.9
Cc01_g04530 Coffea canephora HOM05D001846 ORTHO05D005785 1.8e-72 277.7 401 48.1
Nitab4.5_0002741g0070 Nicotiana tabacum HOM05D001846 ORTHO05D005785 1.5e-71 274.6 466 45.1
CAN.G71.16 Capsicum annuum HOM05D001846 ORTHO05D005785 2.0e-71 274.2 478 43.7
ClCG02G023130 Citrullus lanatus HOM05D001846 ORTHO05D005785 1.4e-69 268.1 442 43.2
PSO700G0220 Papaver somniferum HOM05D001846 ORTHO05D005785 9.1e-69 265.4 476 42.6
Migut.D00610 Erythranthe guttata HOM05D001846 ORTHO05D005785 2.0e-68 264.2 488 40.0
Ah.06g194060 Amaranthus hybridus HOM05D001846 ORTHO05D005785 1.0e-67 261.9 460 40.2
Lsat_1_v5_gn_6_25301 Lactuca sativa HOM05D001846 ORTHO05D005785 1.3e-67 261.5 401 43.4
PSO170G6025 Papaver somniferum HOM05D001846 ORTHO05D005785 3.8e-67 260.0 477 41.9
ECA233G5307 Erigeron canadensis HOM05D001846 ORTHO05D005785 2.5e-66 257.3 484 39.3
EL10Ac4g10235 Beta vulgaris HOM05D001846 ORTHO05D005785 7.2e-66 255.8 476 42.2
Nn7g36246 Nelumbo nucifera HOM05D001846 ORTHO05D005785 9.4e-66 255.4 439 42.4
SGA_v2.0_scaffold8G04581 Striga asiatica HOM05D001846 ORTHO05D005785 3.9e-64 250.0 522 37.7
Oeu026419.1 Olea europaea HOM05D001846 ORTHO05D005785 1.7e-62 244.6 524 42.9
DCAR_023761 Daucus carota HOM05D001846 ORTHO05D005785 2.8e-62 243.8 493 40.6
Nitab4.5_0007154g0020 Nicotiana tabacum HOM05D001846 ORTHO05D005785 1.7e-59 234.6 404 44.3
CsaV3_6G039320 Cucumis sativus L. HOM05D001846 ORTHO05D005785 3.8e-59 233.4 503 36.6
Sed0016770 Sechium edule HOM05D001846 ORTHO05D005785 5.5e-58 229.6 410 40.7
MELO3C014586.2 Cucumis melo HOM05D001846 ORTHO05D005785 9.4e-58 228.8 501 34.1
Thhalv10011423m.g Eutrema salsugineum HOM05D001846 ORTHO05D005785 9.4e-58 228.8 460 42.4
MSTRG.12465 Avicennia marina HOM05D001846 ORTHO05D005785 2.7e-57 227.3 433 39.7
vmacro04149 Vaccinium macrocarpon HOM05D001846 ORTHO05D005785 3.6e-57 226.9 478 37.9
Peaxi162Scf00004g02629 Petunia axillaris HOM05D001846 ORTHO05D005785 4.7e-57 226.5 416 43.0
AT1G51405 Arabidopsis thaliana HOM05D001846 ORTHO05D005785 1.0e-56 225.3 412 40.5
MSTRG.17597 Avicennia marina HOM05D001846 ORTHO05D005785 1.3e-54 218.4 441 39.7
FAN25G3220 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.7e-54 218.0 254 54.3
Hund22024 Selenicereus undatus HOM05D001846 ORTHO05D005785 2.8e-54 217.2 469 39.0
Carub.0001s4028 Capsella rubella HOM05D001846 ORTHO05D005785 4.8e-54 216.5 368 44.0
THA.LOC104811173 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 8.3e-54 215.7 412 38.8
HanXRQChr02g0051491 Helianthus annuus HOM05D001846 ORTHO05D005785 1.8e-53 214.5 476 35.1
MBI04_g43760_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 2.7e-52 210.7 479 37.8
Sp1g38080 Schrenkiella parvula HOM05D001846 ORTHO05D005785 1.3e-51 208.4 466 39.1
Rhsim13G0220400 Rhododendron simsii HOM05D001846 ORTHO05D005785 5.0e-51 206.5 513 34.9
FAN25G3801 Fragaria x ananassa HOM05D001846 ORTHO05D005785 2.5e-50 204.1 436 37.4
BcaB07g33587 Brassica carinata HOM05D001846 ORTHO05D005785 5.5e-50 203.0 426 40.4
Glyma.06G203350 Glycine max HOM05D001846 ORTHO05D005785 5.2e-48 196.4 154 76.6
Aa31LG10G3580 Aethionema arabicum HOM05D000089 ORTHO05D005785 8.8e-48 195.7 419 41.8
Oeu016678.1 Olea europaea HOM05D001846 ORTHO05D005785 2.6e-47 194.1 492 33.7
CDE05G0547 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 9.8e-47 192.2 470 35.7
BraA06t23456Z Brassica rapa HOM05D001846 ORTHO05D005785 2.4e-45 187.6 426 37.6
CARHR041560 Cardamine hirsuta HOM05D001846 ORTHO05D005785 4.1e-45 186.8 408 38.2
THA.LOC104817913 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 4.1e-45 186.8 445 34.4
AL1G59260 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 4.5e-44 183.3 465 37.4
A06p02500 Brassica napus HOM05D001846 ORTHO05D005785 3.6e-41 173.7 426 38.5
SalBow1G1572 Salvia bowleyana HOM05D001846 ORTHO05D005785 4.7e-41 173.3 447 33.3
BcaC08g43310 Brassica carinata HOM05D001846 ORTHO05D005785 1.1e-37 162.2 426 35.9
BraA08t32338Z Brassica rapa HOM05D001846 ORTHO05D005785 1.4e-37 161.8 419 37.0
C06p06570 Brassica napus HOM05D001846 ORTHO05D005785 2.4e-37 161.0 426 35.9
BolC6t35770H Brassica oleracea HOM05D001846 ORTHO05D005785 2.4e-37 161.0 426 35.9
MSTRG.18433 Avicennia marina HOM05D001846 ORTHO05D005785 3.5e-36 157.1 268 41.4
BolC3t21298H Brassica oleracea HOM05D001846 ORTHO05D005785 1.3e-35 155.2 419 33.4
PGSC0003DMG400010305 Solanum tuberosum HOM05D001846 ORTHO05D005785 1.7e-35 154.8 305 43.9
ATR0332G095 Amborella trichopoda HOM05D001846 ORTHO05D005785 2.3e-35 154.5 473 28.1
SEGI_01920 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 2.3e-35 154.5 439 29.6
Gohir.A09G113600 Gossypium hirsutum HOM05D001846 ORTHO05D005785 2.9e-35 154.1 264 44.3
BcaC01g01249 Brassica carinata HOM05D001846 ORTHO05D005785 3.3e-34 150.6 419 33.7
C03p89760 Brassica napus HOM05D001846 ORTHO05D005785 3.3e-34 150.6 419 33.7
Zm00001eb008800 Zea mays HOM05D001846 ORTHO05D005785 3.3e-34 150.6 503 32.0
BcaB04g17234 Brassica carinata HOM05D001846 ORTHO05D005785 1.4e-32 145.2 426 35.4
A08p03060 Brassica napus HOM05D001846 ORTHO05D005785 3.1e-32 144.1 419 35.8
Zm00001eb400050 Zea mays HOM05D001846 ORTHO05D005785 8.9e-32 142.5 457 29.5
MBI04_g45701_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 2.6e-31 141.0 233 41.6
Actinidia26798 Actinidia chinensis HOM05D001846 ORTHO05D005785 4.7e-25 120.2 244 38.1
CDE05G3609 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 7.5e-23 112.8 237 39.7
MSTRG.21370 Avicennia marina HOM05D001846 ORTHO05D005785 3.5e-20 104.0 97 55.7
Nn6g35051 Nelumbo nucifera HOM05D001846 ORTHO05D005785 1.7e-19 101.7 126 42.1
HPP92_007908 Vanilla planifolia HOM05D001846 ORTHO05D005785 1.5e-18 98.6 279 31.5
CDE05G1816 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 1.6e-17 95.1 99 48.5
QL10p038631 Quercus lobata HOM05D001846 ORTHO05D005785 2.1e-17 94.7 111 51.4
QL02p066233 Quercus lobata HOM05D001846 ORTHO05D005785 3.6e-17 94.0 116 47.4
Gohir.A09G113700 Gossypium hirsutum HOM05D001846 ORTHO05D005785 3.1e-16 90.9 83 55.4
SGA_v2.0_scaffold247G44890 Striga asiatica HOM05D001846 ORTHO05D005785 4.0e-16 90.5 206 41.7
Nn2g13769 Nelumbo nucifera HOM05D001846 ORTHO05D005785 2.4e-13 81.3 237 33.8
Os03g0216900 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D005785 1.0e-11 75.9 191 31.9
Zm00001eb393780 Zea mays HOM05D001846 ORTHO05D005785 1.8e-08 65.1 199 34.7
MSTRG.18434 Avicennia marina HOM05D001846 ORTHO05D005785 2.9e-06 57.8 236 30.5


User provided reference genes

Program Settings