Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_18934_v3 Cicer arietinum L. HOM05D006085 ORTHO05D007559 1.0e-276 956.1 458 100.0
Medtr4g078555 Medicago truncatula HOM05D006085 ORTHO05D007559 3.0e-236 821.6 458 84.9
Psat7g168600 Pisum sativum HOM05D006085 ORTHO05D007559 2.9e-231 805.1 458 83.8
Glyma.06G290500 Glycine max HOM05D006085 ORTHO05D007559 2.3e-225 785.4 458 82.3
Lj3g0015664 Lotus japonicus HOM05D006085 ORTHO05D007559 4.0e-225 784.6 458 82.3
Glyma.12G116400 Glycine max HOM05D006085 ORTHO05D007559 1.7e-223 779.2 458 81.2
Lalb_Chr19g0135161 Lupinus albus HOM05D006085 ORTHO05D007559 7.1e-222 773.9 467 80.5
Phvul.011G125900 Phaseolus vulgaris HOM05D006085 ORTHO05D007559 2.0e-216 755.7 460 79.3
arahy.Tifrunner.gnm1.ann1.C4PCKW Arachis hypogaea HOM05D006085 ORTHO05D007559 1.8e-204 716.1 484 72.7
VMungo1127G1010 Vigna mungo HOM05D006085 ORTHO05D007559 4.5e-200 701.4 458 74.5
Haze_13204 Corylus avellana HOM05D006085 ORTHO05D007559 2.0e-192 676.0 471 68.6
CiPaw.03G179300 Carya illinoinensis HOM05D006085 ORTHO05D007559 2.1e-189 666.0 458 69.2
QL08p039688 Quercus lobata HOM05D006085 ORTHO05D007559 2.1e-189 666.0 457 70.0
GSVIVG01020577001 Vitis vinifera HOM05D006085 ORTHO05D007559 4.8e-186 654.8 454 67.4
RcHm_v2.0_Chr2g0127641 Rosa chinensis HOM05D006085 ORTHO05D007559 1.5e-184 649.8 469 67.4
TWI59G1154 Tripterygium wilfordii HOM05D006085 ORTHO05D007559 2.0e-184 649.4 454 67.4
Duzib052G1056 Durio zibethinus HOM05D006085 ORTHO05D007559 7.6e-184 647.5 455 66.8
CsaV3_7G005870 Cucumis sativus L. HOM05D006085 ORTHO05D007559 1.3e-183 646.7 458 66.6
MD17G1236100 Malus domestica HOM05D006085 ORTHO05D007559 1.7e-183 646.4 469 67.0
MELO3C018706.2 Cucumis melo HOM05D006085 ORTHO05D007559 2.1e-181 639.4 473 64.5
Potri.007G139000 Populus trichocarpa HOM05D006085 ORTHO05D007559 1.0e-180 637.1 455 66.4
Rhsim06G0139100 Rhododendron simsii HOM05D006085 ORTHO05D007559 3.0e-180 635.6 484 64.0
Thecc.02G182800 Theobroma cacao HOM05D006085 ORTHO05D007559 1.5e-179 633.3 455 65.9
Manes.13G147400 Manihot esculenta HOM05D006085 ORTHO05D007559 4.3e-179 631.7 455 64.6
arahy.Tifrunner.gnm1.ann1.RY71RI Arachis hypogaea HOM05D006085 ORTHO05D007559 5.7e-179 631.3 458 69.4
CANSAT64G0553 Cannabis sativa HOM05D006085 ORTHO05D007559 7.4e-179 630.9 458 64.8
Ciclev10014891m.g Citrus clementina HOM05D006085 ORTHO05D007559 1.3e-178 630.2 455 67.5
Actinidia30466 Actinidia chinensis HOM05D006085 ORTHO05D007559 1.6e-178 629.8 458 66.4
Nn1g04152 Nelumbo nucifera HOM05D006085 ORTHO05D007559 4.8e-178 628.2 458 63.8
CSS0044112 Camellia sinensis var. sinensis HOM05D006085 ORTHO05D007559 1.4e-177 626.7 458 65.3
FvH4_6g26520 Fragaria vesca HOM05D006085 ORTHO05D007559 1.4e-177 626.7 469 64.8
Gohir.A13G055500 Gossypium hirsutum HOM05D006085 ORTHO05D007559 4.1e-177 625.2 455 65.3
Gorai.013G075800 Gossypium raimondii HOM05D006085 ORTHO05D007559 6.9e-177 624.4 455 65.3
Gohir.D13G066600 Gossypium hirsutum HOM05D006085 ORTHO05D007559 9.1e-177 624.0 455 65.1
TAR626G0071 Trochodendron aralioides HOM05D006085 ORTHO05D007559 2.6e-176 622.5 451 65.2
arahy.Tifrunner.gnm1.ann1.UWD03M Arachis hypogaea HOM05D006085 ORTHO05D007559 5.9e-176 621.3 441 70.7
Lj8C109T7 Lonicera japonica HOM05D006085 ORTHO05D007559 2.9e-175 619.0 460 65.0
Atru.chr6.2894 Acer truncatum HOM05D006085 ORTHO05D007559 3.2e-174 615.5 454 65.4
Sabra07G0112000 Salix brachista HOM05D006085 ORTHO05D007559 7.2e-174 614.4 455 64.6
AUR62038885 Chenopodium quinoa HOM05D006085 ORTHO05D007559 2.3e-172 609.4 460 62.6
Hund01031 Selenicereus undatus HOM05D006085 ORTHO05D007559 2.3e-172 609.4 456 64.9
Prupe.3G189400 Prunus persica HOM05D006085 ORTHO05D007559 3.9e-172 608.6 467 63.8
Hma1.2p1_0002F.1_g002100 Hydrangea macrophylla HOM05D006085 ORTHO05D007559 2.2e-170 602.8 463 63.7
THA.LOC104804055 Tarenaya hassleriana HOM05D006085 ORTHO05D007559 1.1e-169 600.5 458 60.3
AL3G53720 Arabidopsis lyrata HOM05D006085 ORTHO05D007559 5.3e-169 598.2 454 61.5
AT2G20635 Arabidopsis thaliana HOM05D006085 ORTHO05D007559 1.2e-168 597.0 455 61.3
PGR042G2089 Punica granatum HOM05D006085 ORTHO05D007559 2.0e-168 596.3 454 63.2
CARHR111290 Cardamine hirsuta HOM05D006085 ORTHO05D007559 4.5e-168 595.1 455 60.7
ClCG07G002490 Citrullus lanatus HOM05D006085 ORTHO05D007559 3.8e-167 592.0 458 62.7
Sc12g0003150 Simmondsia chinensis HOM05D006085 ORTHO05D007559 3.8e-167 592.0 455 62.6
Sp3g33890 Schrenkiella parvula HOM05D006085 ORTHO05D007559 5.0e-167 591.7 456 61.0
MSTRG.15247 Avicennia marina HOM05D006085 ORTHO05D007559 1.9e-166 589.7 463 62.4
BcaB08g34934 Brassica carinata HOM05D006085 ORTHO05D007559 1.9e-166 589.7 455 60.7
Migut.M00167 Erythranthe guttata HOM05D006085 ORTHO05D007559 2.5e-166 589.3 456 63.2
arahy.Tifrunner.gnm1.ann1.9UNY9A Arachis hypogaea HOM05D006085 ORTHO05D007559 1.2e-165 587.0 429 68.8
CAN.G209.32 Capsicum annuum HOM05D006085 ORTHO05D007559 2.0e-163 579.7 462 62.8
AUR62038975 Chenopodium quinoa HOM05D006085 ORTHO05D007559 2.6e-163 579.3 504 56.5
Sopen07g027790 Solanum pennellii HOM05D006085 ORTHO05D007559 3.3e-163 578.9 462 61.5
Thhalv10001957m.g Eutrema salsugineum HOM05D006085 ORTHO05D007559 9.7e-163 577.4 456 59.9
Lsat_1_v5_gn_4_66841 Lactuca sativa HOM05D006085 ORTHO05D007559 1.3e-162 577.0 467 59.5
Solyc07g053820.3 Solanum lycopersicum HOM05D006085 ORTHO05D007559 1.3e-162 577.0 462 61.3
Carub.0003s3516 Capsella rubella HOM05D006085 ORTHO05D007559 4.8e-162 575.1 454 59.3
C08p42090 Brassica napus HOM05D006085 ORTHO05D007559 6.3e-162 574.7 472 57.6
PGSC0003DMG400032825 Solanum tuberosum HOM05D006085 ORTHO05D007559 8.2e-162 574.3 462 61.0
BcaC07g41200 Brassica carinata HOM05D006085 ORTHO05D007559 2.4e-161 572.8 472 57.4
Aa31LG8G17530 Aethionema arabicum HOM05D006085 ORTHO05D007559 9.1e-161 570.9 456 59.0
Aqoxy1G02363 Aquilegia oxysepala HOM05D006085 ORTHO05D007559 2.0e-160 569.7 452 59.7
BraA09t41263Z Brassica rapa HOM05D006085 ORTHO05D007559 1.0e-159 567.4 466 58.2
SGA_v2.0_scaffold70G23511 Striga asiatica HOM05D006085 ORTHO05D007559 1.3e-159 567.0 447 60.6
A09p58770 Brassica napus HOM05D006085 ORTHO05D007559 1.5e-158 563.5 483 56.1
vmacro12328 Vaccinium macrocarpon HOM05D006085 ORTHO05D007559 1.6e-157 560.1 488 57.6
Oeu036070.3 Olea europaea HOM05D006085 ORTHO05D007559 4.0e-156 555.4 416 63.5
MBI18_g34208_MAGBIO Magnolia biondii HOM05D006085 ORTHO05D007559 8.8e-156 554.3 453 58.1
Eucgr.A01834 Eucalyptus grandis HOM05D006085 ORTHO05D007559 2.0e-155 553.1 447 61.5
PSO675G5281 Papaver somniferum HOM05D006085 ORTHO05D007559 2.0e-155 553.1 451 58.3
Peaxi162Scf00981g00430 Petunia axillaris HOM05D006085 ORTHO05D007559 3.3e-155 552.4 495 57.4
ECA234G4181 Erigeron canadensis HOM05D006085 ORTHO05D007559 2.2e-154 549.7 457 58.4
PSO541G4164 Papaver somniferum HOM05D006085 ORTHO05D007559 1.1e-153 547.4 451 57.6
ATR0217G009 Amborella trichopoda HOM05D006085 ORTHO05D007559 5.3e-153 545.0 457 57.3
HanXRQChr10g0284071 Helianthus annuus HOM05D006085 ORTHO05D007559 7.0e-153 544.7 458 58.1
Sed0017729 Sechium edule HOM05D006085 ORTHO05D007559 7.0e-153 544.7 395 63.8
Ah.01g015320 Amaranthus hybridus HOM05D006085 ORTHO05D007559 1.7e-151 540.0 466 56.9
Cpa.g.sc83.67 Carica papaya HOM05D006085 ORTHO05D007559 1.9e-150 536.6 455 58.5
DCAR_021253 Daucus carota HOM05D006085 ORTHO05D007559 1.9e-150 536.6 523 54.1
COL.COLO4_05950 Corchorus olitorius HOM05D006085 ORTHO05D007559 1.6e-149 533.5 454 59.0
Manes.13G145916 Manihot esculenta HOM05D006085 ORTHO05D007559 6.3e-146 521.5 455 56.3
HPP92_014185 Vanilla planifolia HOM05D006085 ORTHO05D007559 2.9e-143 512.7 449 54.8
BolC8t51769H Brassica oleracea HOM05D006085 ORTHO05D007559 6.5e-143 511.5 472 53.2
Os07g0508500 Oryza sativa ssp. japonica HOM05D006085 ORTHO05D007559 2.0e-139 500.0 456 52.2
CDE04G1826 Ceratophyllum demersum HOM05D006085 ORTHO05D007559 4.9e-138 495.4 399 60.4
FAN02G0764 Fragaria x ananassa HOM05D006085 ORTHO05D007559 4.5e-136 488.8 320 70.9
Zm00001eb322380 Zea mays HOM05D006085 ORTHO05D007559 1.8e-132 476.9 439 53.5
Prupe.3G139600 Prunus persica HOM05D006085 ORTHO05D007559 3.1e-124 449.5 309 69.6
Cc05_g07490 Coffea canephora HOM05D006085 ORTHO05D007559 8.3e-122 441.4 364 61.0
Nitab4.5_0000638g0100 Nicotiana tabacum HOM05D006085 ORTHO05D007559 6.8e-116 421.8 362 59.9
Nitab4.5_0001752g0030 Nicotiana tabacum HOM05D006085 ORTHO05D007559 2.9e-114 416.4 460 49.3
TPR.G31028 Trifolium pratense HOM05D006085 ORTHO05D007559 9.5e-110 401.4 465 51.0
Pp3c20_12130 Physcomitrium patens HOM05D006085 ORTHO05D007559 6.2e-109 398.7 406 50.0
AagrBONN_evm.TU.Sc2ySwM_228.5266 Anthoceros agrestis HOM05D006085 ORTHO05D007559 5.8e-99 365.5 358 48.9
Mapoly0009s0056 Marchantia polymorpha HOM05D006085 ORTHO05D007559 7.6e-99 365.2 379 47.2
Manes.13G145813 Manihot esculenta HOM05D006085 ORTHO05D007559 6.2e-93 345.5 201 75.6
Manes.13G145816 Manihot esculenta HOM05D006085 ORTHO05D007559 5.8e-91 339.0 208 73.1
unitig_21.g20425 Utricularia gibba HOM05D006085 ORTHO05D007559 1.6e-85 320.9 427 42.6
Manes.13G145812 Manihot esculenta HOM05D006085 ORTHO05D007559 3.4e-75 286.6 170 72.9
TPR.G23020 Trifolium pratense HOM05D006085 ORTHO05D007559 3.6e-64 250.0 132 87.9
CBR_g48499 Chara braunii HOM05D006085 ORTHO05D007559 5.7e-62 242.7 332 37.7
MCO16G047 Micromonas commoda HOM05D006085 ORTHO05D007559 4.1e-52 209.9 319 37.6
TPR.G6860 Trifolium pratense HOM05D006085 ORTHO05D007559 7.0e-52 209.1 142 73.2
Duzib132G0978 Durio zibethinus HOM05D006085 ORTHO05D007559 5.0e-50 203.0 195 52.8
Cc00_g12330 Coffea canephora HOM05D006085 ORTHO05D007559 5.5e-41 172.9 173 49.7
TPR.G107 Trifolium pratense HOM05D006085 ORTHO05D007559 2.6e-38 164.1 79 96.2
Cc00_g12340 Coffea canephora HOM05D006085 ORTHO05D007559 4.4e-38 163.3 262 42.0
TPR.G28910 Trifolium pratense HOM05D006085 ORTHO05D007559 7.2e-25 119.4 63 85.7
Nitab4.5_0000638g0110 Nicotiana tabacum HOM05D006085 ORTHO05D007559 6.3e-21 106.3 86 54.7
Cc05_g07480 Coffea canephora HOM05D006085 ORTHO05D007559 9.2e-20 102.4 86 57.0
MD09G1244300 Malus domestica HOM05D006085 ORTHO05D007559 2.9e-18 97.4 90 56.7
Prupe.3G139700 Prunus persica HOM05D006085 ORTHO05D007559 4.3e-17 93.6 108 47.2
SMO276G0023 Selaginella moellendorffii HOM05D006085 ORTHO05D007559 8.9e-15 85.9 133 33.1
TPR.G6836 Trifolium pratense HOM05D006085 ORTHO05D007559 5.4e-12 76.6 43 79.1
TPR.G29620 Trifolium pratense HOM05D006085 ORTHO05D007559 2.0e-11 74.7 52 71.2
PRCOL_00005530 Prasinoderma coloniale HOM05D000750 ORTHO05D000714 8.9e-07 59.3 153 31.4
unitig_88.g27688 Utricularia gibba HOM05D000750 ORTHO05D000714 8.9e-07 59.3 192 31.2
Ciclev10019090m.g Citrus clementina HOM05D000750 ORTHO05D000714 1.5e-06 58.5 152 34.2
Gohir.D11G310300 Gossypium hirsutum HOM05D000750 ORTHO05D000714 1.5e-06 58.5 190 29.5
Gorai.007G343500 Gossypium raimondii HOM05D000750 ORTHO05D000714 1.5e-06 58.5 190 29.5
Hma1.2p1_0256F.1_g103290 Hydrangea macrophylla HOM05D006085 ORTHO05D007559 1.5e-06 58.5 84 39.3
Lalb_Chr22g0359211 Lupinus albus HOM05D000750 ORTHO05D000714 1.5e-06 58.5 191 31.9
Psat5g116400 Pisum sativum HOM05D000088 ORTHO05D001217 1.5e-06 58.5 215 25.6
HPP92_002752 Vanilla planifolia HOM05D000055 ORTHO05D000057 1.5e-06 58.5 165 30.9
HPP92_027756 Vanilla planifolia HOM05D000055 ORTHO05D000057 1.5e-06 58.5 165 30.9
Haze_19417 Corylus avellana HOM05D000750 ORTHO05D000714 2.6e-06 57.8 182 30.8
Haze_19446 Corylus avellana HOM05D000750 ORTHO05D000714 2.6e-06 57.8 182 30.8
Gohir.A11G296600 Gossypium hirsutum HOM05D000750 ORTHO05D000714 2.6e-06 57.8 182 29.7
Nn7g35845 Nelumbo nucifera HOM05D000750 ORTHO05D000714 2.6e-06 57.8 204 29.4
Phvul.001G110300 Phaseolus vulgaris HOM05D000750 ORTHO05D000714 2.6e-06 57.8 182 32.4
Ciclev10014554m.g Citrus clementina HOM05D000132 ORTHO05D000058 3.4e-06 57.4 189 27.0
Lalb_Chr14g0364471 Lupinus albus HOM05D000750 ORTHO05D000714 3.4e-06 57.4 210 30.0
TPR.G24322 Trifolium pratense HOM05D006085 ORTHO05D411953 3.4e-06 57.4 37 70.3
Gohir.A11G259400 Gossypium hirsutum HOM05D000750 ORTHO05D000714 4.4e-06 57.0 192 30.7
Lsat_1_v5_gn_1_59680 Lactuca sativa HOM05D000750 ORTHO05D000714 4.4e-06 57.0 199 30.2
SEGI_18400 Sequoiadendron giganteum HOM05D004939 ORTHO05D005843 4.4e-06 57.0 81 30.9
Duzib106G1106 Durio zibethinus HOM05D000750 ORTHO05D000714 5.8e-06 56.6 182 30.8
HanXRQChr09g0249031 Helianthus annuus HOM05D000083 ORTHO05D000196 5.8e-06 56.6 218 29.4
Medtr3g076970 Medicago truncatula HOM05D000088 ORTHO05D001217 5.8e-06 56.6 215 25.1
Thecc.05G294300 Theobroma cacao HOM05D000750 ORTHO05D000714 5.8e-06 56.6 182 31.3
VMungo1383G2264 Vigna mungo HOM05D000750 ORTHO05D000714 5.8e-06 56.6 183 31.1
arahy.Tifrunner.gnm1.ann1.8Z2YQA Arachis hypogaea HOM05D000750 ORTHO05D000714 7.5e-06 56.2 208 30.3
Rhsim04G0087400 Rhododendron simsii HOM05D000750 ORTHO05D000714 7.5e-06 56.2 182 30.8
ECA285G0001 Erigeron canadensis HOM05D000750 ORTHO05D000714 9.8e-06 55.8 199 29.6
Gohir.D11G269600 Gossypium hirsutum HOM05D000750 ORTHO05D000714 9.8e-06 55.8 192 29.7
Gorai.007G289500 Gossypium raimondii HOM05D000750 ORTHO05D000714 9.8e-06 55.8 192 29.7
Gorai.013G203000 Gossypium raimondii HOM05D000750 ORTHO05D000714 9.8e-06 55.8 162 30.9
MD15G1091200 Malus domestica HOM05D000750 ORTHO05D000714 9.8e-06 55.8 216 29.6
SEGI_31583 Sequoiadendron giganteum HOM05D006085 ORTHO05D007559 9.8e-06 55.8 54 40.7
unitig_0.g2571 Utricularia gibba HOM05D000750 ORTHO05D000714 9.8e-06 55.8 164 31.1


User provided reference genes

Program Settings