Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_18872_v3 Cicer arietinum L. HOM05D003819 ORTHO05D005291 0.0e+00 1459.9 711 100.0
Medtr4g080020 Medicago truncatula HOM05D003819 ORTHO05D005291 0.0e+00 1284.2 715 88.0
TPR.G4345 Trifolium pratense HOM05D003819 ORTHO05D005291 0.0e+00 1248.8 711 86.1
Psat7g136560 Pisum sativum HOM05D003819 ORTHO05D005291 0.0e+00 1241.5 730 85.6
Lj3g0009870 Lotus japonicus HOM05D003819 ORTHO05D005291 0.0e+00 1161.0 712 80.5
Phvul.011G129700 Phaseolus vulgaris HOM05D003819 ORTHO05D005291 0.0e+00 1157.1 712 80.1
VMungo1127G0295 Vigna mungo HOM05D003819 ORTHO05D005291 0.0e+00 1150.6 712 79.8
Lalb_Chr03g0029931 Lupinus albus HOM05D003819 ORTHO05D005291 0.0e+00 1129.4 722 78.0
Glyma.12G128600 Glycine max HOM05D003819 ORTHO05D005291 0.0e+00 1114.8 712 77.9
Glyma.06G277000 Glycine max HOM05D003819 ORTHO05D005291 0.0e+00 1096.3 718 76.6
Lalb_Chr22g0356941 Lupinus albus HOM05D003819 ORTHO05D005291 1.9e-290 1002.3 723 70.1
Cfa023595 Carpinus fangiana HOM05D003819 ORTHO05D005291 5.0e-259 897.9 715 63.8
CiPaw.03G195200 Carya illinoinensis HOM05D003819 ORTHO05D005291 2.1e-257 892.5 727 63.3
COL.COLO4_33586 Corchorus olitorius HOM05D003819 ORTHO05D005291 3.1e-256 888.6 712 62.9
Gorai.008G099500 Gossypium raimondii HOM05D003819 ORTHO05D005291 4.9e-254 881.3 710 62.8
Gohir.D12G091900 Gossypium hirsutum HOM05D003819 ORTHO05D005291 1.4e-253 879.8 710 62.8
Duzib264G1063 Durio zibethinus HOM05D003819 ORTHO05D005291 2.7e-252 875.5 713 62.6
Gohir.A12G077800 Gossypium hirsutum HOM05D003819 ORTHO05D005291 2.7e-252 875.5 710 62.3
QL08p041841 Quercus lobata HOM05D003819 ORTHO05D005291 3.5e-252 875.2 721 61.9
Prupe.3G117700 Prunus persica HOM05D003819 ORTHO05D005291 1.3e-251 873.2 733 61.0
MELO3C018720.2 Cucumis melo HOM05D003819 ORTHO05D005291 5.1e-251 871.3 719 62.6
MD09G1236800 Malus domestica HOM05D003819 ORTHO05D005291 3.3e-250 868.6 725 61.2
MD17G1266700 Malus domestica HOM05D003819 ORTHO05D005291 9.5e-250 867.1 724 61.5
Atru.chr6.2788 Acer truncatum HOM05D003819 ORTHO05D005291 3.6e-249 865.1 710 62.0
CsaV3_7G005710 Cucumis sativus L. HOM05D003819 ORTHO05D005291 2.3e-248 862.4 721 61.9
Eucgr.K01130 Eucalyptus grandis HOM05D003819 ORTHO05D005291 3.1e-248 862.1 721 62.8
FAN05G0664 Fragaria x ananassa HOM05D003819 ORTHO05D005291 3.1e-248 862.1 723 60.9
TAR629G3160 Trochodendron aralioides HOM05D003819 ORTHO05D005291 5.2e-248 861.3 740 61.1
Thecc.01G151000 Theobroma cacao HOM05D003819 ORTHO05D005291 8.9e-248 860.5 717 61.4
ClCG07G002740 Citrullus lanatus HOM05D003819 ORTHO05D005291 2.0e-247 859.4 720 61.9
PGR142G0379 Punica granatum HOM05D003819 ORTHO05D005291 2.6e-247 859.0 718 62.7
RcHm_v2.0_Chr2g0129761 Rosa chinensis HOM05D003819 ORTHO05D005291 3.7e-246 855.1 720 60.4
FAN02G3241 Fragaria x ananassa HOM05D003819 ORTHO05D005291 1.2e-244 850.1 729 59.9
CANSAT64G0548 Cannabis sativa HOM05D003819 ORTHO05D005291 4.6e-244 848.2 712 61.2
FAN09G4766 Fragaria x ananassa HOM05D003819 ORTHO05D005291 6.0e-244 847.8 729 60.1
FvH4_6g27480 Fragaria vesca HOM05D003819 ORTHO05D005291 3.0e-243 845.5 730 60.0
Aa31LG1G24420 Aethionema arabicum HOM05D003819 ORTHO05D005291 8.6e-243 844.0 710 60.0
Sed0027609 Sechium edule HOM05D003819 ORTHO05D005291 8.6e-243 844.0 719 60.2
FAN14G1852 Fragaria x ananassa HOM05D003819 ORTHO05D005291 5.6e-242 841.3 730 59.7
GSVIVG01020711001 Vitis vinifera HOM05D003819 ORTHO05D005291 5.6e-242 841.3 710 60.8
Sabra14G0107700 Salix brachista HOM05D003819 ORTHO05D005291 1.4e-240 836.6 709 59.8
DCAR_021294 Daucus carota HOM05D003819 ORTHO05D005291 5.2e-240 834.7 726 59.2
Potri.014G142600 Populus trichocarpa HOM05D003819 ORTHO05D005291 1.2e-239 833.6 708 60.2
Cpa.g.sc52.168 Carica papaya HOM05D003819 ORTHO05D005291 3.4e-239 832.0 707 61.1
Actinidia11157 Actinidia chinensis HOM05D003819 ORTHO05D005291 1.3e-238 830.1 715 58.5
BcaB06g29258 Brassica carinata HOM05D003819 ORTHO05D005291 6.4e-238 827.8 706 59.1
Nitab4.5_0000249g0240 Nicotiana tabacum HOM05D003819 ORTHO05D005291 1.1e-237 827.0 722 59.4
Sp4g24760 Schrenkiella parvula HOM05D003819 ORTHO05D005291 1.1e-237 827.0 707 58.7
Rhsim06G0130800 Rhododendron simsii HOM05D003819 ORTHO05D005291 2.4e-237 825.9 732 58.3
PGSC0003DMG400035320 Solanum tuberosum HOM05D003819 ORTHO05D005291 3.2e-237 825.5 718 59.5
CARHR137760 Cardamine hirsuta HOM05D003819 ORTHO05D005291 2.1e-236 822.8 710 59.2
THA.LOC104802258 Tarenaya hassleriana HOM05D003819 ORTHO05D005291 2.1e-236 822.8 707 60.0
AL4G41180 Arabidopsis lyrata HOM05D003819 ORTHO05D005291 3.5e-236 822.0 711 58.8
Sopen07g027110 Solanum pennellii HOM05D003819 ORTHO05D005291 7.8e-236 820.8 715 58.6
AT2G42620 Arabidopsis thaliana HOM05D003819 ORTHO05D005291 1.3e-235 820.1 707 59.1
Nitab4.5_0006875g0030 Nicotiana tabacum HOM05D003819 ORTHO05D005291 2.3e-235 819.3 724 58.8
BraA04t18686Z Brassica rapa HOM05D003819 ORTHO05D005291 1.5e-234 816.6 706 58.5
Migut.M00265 Erythranthe guttata HOM05D003819 ORTHO05D005291 2.5e-234 815.8 718 57.7
BcaNung03224 Brassica carinata HOM05D003819 ORTHO05D005291 3.3e-234 815.5 706 59.2
C04p03960 Brassica napus HOM05D003819 ORTHO05D005291 9.6e-234 813.9 711 58.5
Sopen12g006260 Solanum pennellii HOM05D003819 ORTHO05D005291 1.6e-233 813.1 728 57.6
Solyc12g010900.1 Solanum lycopersicum HOM05D003819 ORTHO05D005291 4.8e-233 811.6 728 57.4
BcaC02g07227 Brassica carinata HOM05D003819 ORTHO05D005291 6.2e-233 811.2 705 58.4
C04p69840 Brassica napus HOM05D003819 ORTHO05D005291 6.2e-233 811.2 705 58.4
BolC4t28484H Brassica oleracea HOM05D003819 ORTHO05D005291 6.2e-233 811.2 705 58.4
A04p32330 Brassica napus HOM05D003819 ORTHO05D005291 8.1e-233 810.8 706 58.1
Lj3g0006196 Lotus japonicus HOM05D003819 ORTHO05D005291 8.1e-233 810.8 705 60.3
Nitab4.5_0013227g0010 Nicotiana tabacum HOM05D003819 ORTHO05D005291 1.8e-232 809.7 730 57.4
BolC4t22032H Brassica oleracea HOM05D003819 ORTHO05D005291 9.0e-232 807.4 738 56.6
Cc05_g08390 Coffea canephora HOM05D003819 ORTHO05D005291 1.2e-231 807.0 713 58.9
Lj1P684T13 Lonicera japonica HOM05D003819 ORTHO05D005291 1.2e-231 807.0 717 59.1
CSS0043691 Camellia sinensis var. sinensis HOM05D003819 ORTHO05D005291 1.5e-231 806.6 739 57.8
MSTRG.15087 Avicennia marina HOM05D003819 ORTHO05D005291 2.0e-231 806.2 715 56.4
PGSC0003DMG400007856 Solanum tuberosum HOM05D003819 ORTHO05D005291 4.9e-230 801.6 731 57.2
CAN.G1148.8 Capsicum annuum HOM05D003819 ORTHO05D005291 8.4e-230 800.8 714 57.0
BcaC02g12429 Brassica carinata HOM05D003819 ORTHO05D005291 1.4e-229 800.0 738 56.2
Ciclev10014472m.g Citrus clementina HOM05D003819 ORTHO05D005291 9.3e-229 797.3 713 58.2
Lsat_1_v5_gn_8_141221 Lactuca sativa HOM05D003819 ORTHO05D005291 1.6e-228 796.6 714 56.3
HanXRQChr17g0558991 Helianthus annuus HOM05D003819 ORTHO05D005291 6.0e-228 794.7 710 56.3
SalBow7G4473 Salvia bowleyana HOM05D003819 ORTHO05D005291 7.9e-228 794.3 714 56.3
Cc00_g28410 Coffea canephora HOM05D003819 ORTHO05D005291 3.0e-227 792.3 712 57.7
SGA_v2.0_scaffold9G04831 Striga asiatica HOM05D003819 ORTHO05D005291 1.5e-226 790.0 720 56.7
ECA233G0398 Erigeron canadensis HOM05D003819 ORTHO05D005291 3.6e-225 785.4 712 57.0
Manes.17G056400 Manihot esculenta HOM05D003819 ORTHO05D005291 4.8e-225 785.0 710 57.5
MBI06_g08600_MAGBIO Magnolia biondii HOM05D003819 ORTHO05D005291 2.0e-223 779.6 715 57.5
TWI14G0201 Tripterygium wilfordii HOM05D003819 ORTHO05D005291 9.9e-223 777.3 712 58.1
Aqoxy1G02044 Aquilegia oxysepala HOM05D003819 ORTHO05D005291 1.3e-222 776.9 719 56.2
CAN.G1081.14 Capsicum annuum HOM05D003819 ORTHO05D005291 2.9e-222 775.8 718 56.7
PSO675G1769 Papaver somniferum HOM05D003819 ORTHO05D005291 3.8e-222 775.4 725 56.1
Haze_13379 Corylus avellana HOM05D003819 ORTHO05D005291 6.0e-220 768.1 713 57.9
Manes.17G056300 Manihot esculenta HOM05D003819 ORTHO05D005291 1.3e-219 766.9 705 56.6
COL.COLO4_31287 Corchorus olitorius HOM05D003819 ORTHO05D005291 1.1e-218 763.8 715 55.8
Solyc07g055120.4 Solanum lycopersicum HOM05D003819 ORTHO05D005291 1.5e-218 763.5 713 55.8
Sc21g0004140 Simmondsia chinensis HOM05D003819 ORTHO05D005291 2.5e-218 762.7 720 55.0
Duzib235G0786 Durio zibethinus HOM05D003819 ORTHO05D005291 4.3e-218 761.9 719 55.4
Oeu058996.1 Olea europaea HOM05D003819 ORTHO05D005291 9.6e-218 760.8 707 57.1
Peaxi162Scf00384g00211 Petunia axillaris HOM05D003819 ORTHO05D005291 1.3e-217 760.4 724 55.4
Dinv07714 Davidia involucrata HOM05D003819 ORTHO05D005291 1.6e-217 760.0 725 56.0
EL10Ac9g20949 Beta vulgaris HOM05D003819 ORTHO05D005291 6.9e-216 754.6 719 55.6
Potri.011G066700 Populus trichocarpa HOM05D003819 ORTHO05D005291 9.0e-216 754.2 704 55.8
Ah.01g003580 Amaranthus hybridus HOM05D003819 ORTHO05D005291 5.8e-215 751.5 715 55.2
Thhalv10017925m.g Eutrema salsugineum HOM05D003819 ORTHO05D005291 3.8e-214 748.8 708 56.1
Sabra11G0048300 Salix brachista HOM05D003819 ORTHO05D005291 7.1e-213 744.6 709 54.7
AUR62042109 Chenopodium quinoa HOM05D003819 ORTHO05D005291 9.3e-213 744.2 717 55.1
Gorai.010G159500 Gossypium raimondii HOM05D003819 ORTHO05D005291 5.7e-210 734.9 707 54.5
Gohir.A06G131200 Gossypium hirsutum HOM05D003819 ORTHO05D005291 2.2e-206 723.0 707 53.9
PSO229G0146 Papaver somniferum HOM05D003819 ORTHO05D005291 2.9e-206 722.6 722 53.6
QL05p047385 Quercus lobata HOM05D003819 ORTHO05D005291 3.8e-206 722.2 706 54.1
Dinv16776 Davidia involucrata HOM05D003819 ORTHO05D005291 1.2e-204 717.2 717 54.5
CiPaw.09G070200 Carya illinoinensis HOM05D003819 ORTHO05D005291 7.9e-204 714.5 707 53.9
Gohir.D10G037300 Gossypium hirsutum HOM05D003819 ORTHO05D005291 3.4e-199 699.1 704 52.7
Gorai.011G039300 Gossypium raimondii HOM05D003819 ORTHO05D005291 3.4e-199 699.1 704 52.8
Ciclev10017759m.g Citrus clementina HOM05D003819 ORTHO05D005291 5.0e-198 695.3 723 51.5
CDE10G0290 Ceratophyllum demersum HOM05D003819 ORTHO05D005291 3.2e-197 692.6 715 51.9
Peaxi162Scf00469g00034 Petunia axillaris HOM05D003819 ORTHO05D005291 2.0e-194 683.3 567 61.4
Gohir.A10G036700 Gossypium hirsutum HOM05D003819 ORTHO05D005291 2.2e-193 679.9 672 54.0
Atru.chr10.1659 Acer truncatum HOM05D003819 ORTHO05D005291 1.1e-192 677.6 716 51.8
Gohir.D06G137250 Gossypium hirsutum HOM05D003819 ORTHO05D005291 9.1e-192 674.5 707 51.3
Nn1g09185 Nelumbo nucifera HOM05D003819 ORTHO05D005291 2.0e-191 673.3 569 59.9
AUR62040526 Chenopodium quinoa HOM05D003819 ORTHO05D005291 2.0e-183 646.7 689 52.0
vmacro12379 Vaccinium macrocarpon HOM05D003819 ORTHO05D005291 2.8e-177 626.3 731 48.7
ATR0602G021 Amborella trichopoda HOM05D003819 ORTHO05D005291 4.1e-176 622.5 711 46.6
Dinv40684 Davidia involucrata HOM05D003819 ORTHO05D005291 4.0e-171 605.9 717 49.5
THA.LOC104813346 Tarenaya hassleriana HOM05D003819 ORTHO05D005291 2.6e-170 603.2 716 45.8
Zm00001eb376660 Zea mays HOM05D003819 ORTHO05D005291 9.8e-170 601.3 723 46.6
Zm00001eb270950 Zea mays HOM05D003819 ORTHO05D005291 2.2e-169 600.1 726 46.0
SEGI_05136 Sequoiadendron giganteum HOM05D003819 ORTHO05D005291 1.8e-168 597.0 839 40.9
Os06g0154200 Oryza sativa ssp. japonica HOM05D003819 ORTHO05D005291 4.2e-165 585.9 742 45.3
Haze_06225 Corylus avellana HOM05D003819 ORTHO05D005291 5.4e-160 568.9 694 46.5
Carub.0004s2507 Capsella rubella HOM05D003819 ORTHO05D005291 3.7e-153 546.2 558 52.2
Mapoly0113s0006 Marchantia polymorpha HOM05D003819 ORTHO05D005291 5.8e-146 522.3 761 39.8
Pp3c17_1180 Physcomitrium patens HOM05D003819 ORTHO05D005291 2.9e-145 520.0 808 38.6
SMO118G0454 Selaginella moellendorffii HOM05D003819 ORTHO05D005291 9.5e-141 505.0 724 41.6
Thecc.06G169900 Theobroma cacao HOM05D003819 ORTHO05D005291 2.1e-135 487.3 530 50.0
Actinidia10955 Actinidia chinensis HOM05D003819 ORTHO05D005291 3.3e-133 479.9 500 52.0
Lj3g0028116 Lotus japonicus HOM05D003819 ORTHO05D005291 2.3e-126 457.2 429 57.6
RcHm_v2.0_Chr2g0128411 Rosa chinensis HOM05D003819 ORTHO05D005291 2.6e-122 443.7 357 62.2
SHI10509 Sapria himalayana HOM05D003819 ORTHO05D005291 1.9e-112 411.0 374 57.8
unitig_85.g27374 Utricularia gibba HOM05D003819 ORTHO05D005291 7.1e-112 409.1 361 59.0
RcHm_v2.0_Chr2g0128401 Rosa chinensis HOM05D003819 ORTHO05D005291 9.3e-104 382.1 339 58.1
AagrBONN_evm.TU.Sc2ySwM_228.1793 Anthoceros agrestis HOM05D003819 ORTHO05D005291 1.8e-91 341.3 924 29.7
Thecc.K0007200 Theobroma cacao HOM05D003819 ORTHO05D005291 2.6e-90 337.4 231 70.1
unitig_85.g27373 Utricularia gibba HOM05D003819 ORTHO05D005291 7.4e-85 319.3 326 48.5
Atru.chr11.57 Acer truncatum HOM05D003819 ORTHO05D005291 1.0e-73 282.3 445 38.4
Cfa000614 Carpinus fangiana HOM05D003819 ORTHO05D005291 1.5e-69 268.5 404 41.1
Oeu053232.1 Olea europaea HOM05D003819 ORTHO05D005291 1.3e-68 265.4 419 39.1
A05p03380 Brassica napus HOM05D003819 ORTHO05D005291 2.7e-63 247.7 179 68.7
Ciclev10026180m.g Citrus clementina HOM05D003819 ORTHO05D005291 6.8e-46 189.9 191 53.4
Psat3g013160 Pisum sativum HOM05D003819 ORTHO05D005291 1.1e-43 182.6 162 58.6
Nn2g14348 Nelumbo nucifera HOM05D003819 ORTHO05D023588 8.9e-38 162.9 151 54.3
AUR62037398 Chenopodium quinoa HOM05D003819 ORTHO05D005291 1.5e-37 162.2 99 77.8
Dinv24544 Davidia involucrata HOM05D003819 ORTHO05D005291 3.4e-29 134.4 148 50.7
FvH4_4g05521 Fragaria vesca HOM05D003819 ORTHO05D005291 9.8e-29 132.9 119 57.1
Lalb_Chr14g0367511 Lupinus albus HOM05D003819 ORTHO05D005291 1.7e-28 132.1 78 76.9
Psat1g205040 Pisum sativum HOM05D003819 ORTHO05D005291 4.9e-28 130.6 275 37.1
Psat7g136520 Pisum sativum HOM05D003819 ORTHO05D005291 1.9e-24 118.6 656 27.1
Aqoxy450s002 Aquilegia oxysepala HOM05D003819 ORTHO05D019686 2.5e-24 118.2 100 54.0
Aqoxy7G03214 Aquilegia oxysepala HOM05D003819 ORTHO05D019686 2.5e-24 118.2 100 54.0
Aqoxy450s003 Aquilegia oxysepala HOM05D003819 ORTHO05D023588 6.2e-23 113.6 96 58.3
Aqoxy7G03213 Aquilegia oxysepala HOM05D003819 ORTHO05D023588 6.2e-23 113.6 96 58.3
Nn6g34429 Nelumbo nucifera HOM05D003819 ORTHO05D019686 2.6e-21 108.2 89 53.9
Nn1g05661 Nelumbo nucifera HOM05D003819 ORTHO05D005291 3.4e-21 107.8 78 65.4
A05p03390 Brassica napus HOM05D003819 ORTHO05D019686 1.4e-19 102.4 84 57.1
Mapoly0086s0086 Marchantia polymorpha HOM05D003819 ORTHO05D038376 2.7e-18 98.2 430 25.6
FvH4_2g05661 Fragaria vesca HOM05D003819 ORTHO05D025473 3.0e-17 94.7 114 51.8
Cc02_g34240 Coffea canephora HOM05D003819 ORTHO05D023588 3.9e-17 94.4 84 59.5
BcaC02g12428 Brassica carinata HOM05D003819 ORTHO05D032918 5.6e-16 90.5 68 63.2
FvH4_2g12921 Fragaria vesca HOM05D003819 ORTHO05D025473 1.6e-15 89.0 125 45.6
C04p03970 Brassica napus HOM05D003819 ORTHO05D032918 2.8e-15 88.2 61 68.9
Nn1g05873 Nelumbo nucifera HOM05D003819 ORTHO05D005291 1.1e-14 86.3 87 55.2
BolC4t22033H Brassica oleracea HOM05D003819 ORTHO05D032918 2.0e-13 82.0 61 63.9
Haze_22749 Corylus avellana HOM05D003819 ORTHO05D005291 5.8e-13 80.5 61 59.0
Nn1g05663 Nelumbo nucifera HOM05D003819 ORTHO05D019686 2.7e-10 71.6 49 61.2
Cpa.g.sc70.88 Carica papaya HOM05D000530 ORTHO05D000621 1.0e-09 69.7 439 23.5
Haze_02876 Corylus avellana HOM05D000448 ORTHO05D000291 5.1e-09 67.4 49 59.2
AagrBONN_evm.TU.Sc2ySwM_228.4816 Anthoceros agrestis HOM05D003819 ORTHO05D038376 1.5e-08 65.9 378 26.2
Nn3g18421 Nelumbo nucifera HOM05D003819 ORTHO05D019686 1.9e-08 65.5 49 53.1
Aqoxy7G03215 Aquilegia oxysepala HOM05D003819 ORTHO05D005291 5.6e-08 63.9 62 50.0
Nn5g28220 Nelumbo nucifera HOM05D003819 ORTHO05D019686 7.3e-08 63.5 48 54.2
DCAR_025753 Daucus carota HOM05D001905 ORTHO05D001820 1.2e-07 62.8 429 24.0
Cc00_g06350 Coffea canephora HOM05D003819 ORTHO05D023588 1.8e-06 58.9 170 30.6
CDE02G3796 Ceratophyllum demersum HOM05D001905 ORTHO05D001820 2.4e-06 58.5 429 22.6
Phvul.001G024700 Phaseolus vulgaris HOM05D001905 ORTHO05D001820 2.4e-06 58.5 429 24.2
MBI01_g44281_MAGBIO Magnolia biondii HOM05D007176 ORTHO05D009050 3.1e-06 58.2 262 26.3
VMungo0647G1437 Vigna mungo HOM05D001905 ORTHO05D001820 6.9e-06 57.0 432 24.5
SMO174G0051 Selaginella moellendorffii HOM05D000530 ORTHO05D000621 9.0e-06 56.6 277 24.9


User provided reference genes

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