Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_18866_v3 Cicer arietinum L. HOM05D006510 ORTHO05D008171 0.0e+00 1627.5 861 100.0
Psat7g163800 Pisum sativum HOM05D006510 ORTHO05D008171 0.0e+00 1484.2 861 90.6
TPR.G16532 Trifolium pratense HOM05D006510 ORTHO05D008171 0.0e+00 1477.6 858 88.7
TPR.G13821 Trifolium pratense HOM05D006510 ORTHO05D008171 0.0e+00 1476.5 861 88.2
Medtr4g080110 Medicago truncatula HOM05D006510 ORTHO05D008171 0.0e+00 1419.4 862 84.7
Lj3g0027149 Lotus japonicus HOM05D006510 ORTHO05D008171 0.0e+00 1389.4 864 82.9
Glyma.06G276100 Glycine max HOM05D006510 ORTHO05D008171 0.0e+00 1365.1 863 82.4
Glyma.12G129300 Glycine max HOM05D006510 ORTHO05D008171 0.0e+00 1363.6 862 82.8
arahy.Tifrunner.gnm1.ann1.J1H900 Arachis hypogaea HOM05D006510 ORTHO05D008171 0.0e+00 1357.4 861 80.0
arahy.Tifrunner.gnm1.ann1.JGR80D Arachis hypogaea HOM05D006510 ORTHO05D008171 0.0e+00 1349.0 861 79.6
Phvul.011G128400 Phaseolus vulgaris HOM05D006510 ORTHO05D008171 0.0e+00 1332.4 866 80.7
Lalb_Chr24g0400131 Lupinus albus HOM05D006510 ORTHO05D008171 0.0e+00 1312.0 864 78.0
QL08p042146 Quercus lobata HOM05D006510 ORTHO05D008171 0.0e+00 1213.0 867 72.1
Cfa021921 Carpinus fangiana HOM05D006510 ORTHO05D008171 0.0e+00 1162.5 866 69.1
VMungo1127G1883 Vigna mungo HOM05D006510 ORTHO05D008171 0.0e+00 1147.1 753 80.5
CiPaw.03G194300 Carya illinoinensis HOM05D006510 ORTHO05D008171 0.0e+00 1145.6 868 68.8
Prupe.3G115700 Prunus persica HOM05D006510 ORTHO05D008171 0.0e+00 1143.6 870 70.2
MD11G1004500 Malus domestica HOM05D006510 ORTHO05D008171 0.0e+00 1128.6 869 69.2
RcHm_v2.0_Chr2g0130091 Rosa chinensis HOM05D006510 ORTHO05D008171 0.0e+00 1127.5 869 68.7
Thecc.01G152700 Theobroma cacao HOM05D006510 ORTHO05D008171 0.0e+00 1127.1 866 67.7
TWI38G0436 Tripterygium wilfordii HOM05D006510 ORTHO05D008171 0.0e+00 1122.8 867 70.1
CANSAT78G1126 Cannabis sativa HOM05D006510 ORTHO05D008171 0.0e+00 1122.5 872 69.3
CSS0034147 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 0.0e+00 1117.8 868 68.0
CSS0039339 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 0.0e+00 1117.4 868 67.9
COL.COLO4_33599 Corchorus olitorius HOM05D006510 ORTHO05D008171 0.0e+00 1116.7 866 68.0
Duzib147G0397 Durio zibethinus HOM05D006510 ORTHO05D008171 0.0e+00 1107.4 866 67.1
Rhsim04G0074900 Rhododendron simsii HOM05D006510 ORTHO05D008171 0.0e+00 1106.3 869 66.4
Haze_13408 Corylus avellana HOM05D006510 ORTHO05D008171 0.0e+00 1098.6 830 68.3
Hma1.2p1_0178F.1_g078710 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 0.0e+00 1097.8 864 67.1
Potri.014G142900 Populus trichocarpa HOM05D006510 ORTHO05D008171 0.0e+00 1097.0 865 65.9
GSVIVG01020726001 Vitis vinifera HOM05D006510 ORTHO05D008171 0.0e+00 1093.6 864 66.6
FAN05G5099 Fragaria x ananassa HOM05D006510 ORTHO05D008171 0.0e+00 1093.2 869 65.9
TAR636G1540 Trochodendron aralioides HOM05D006510 ORTHO05D008171 0.0e+00 1092.4 872 65.4
Ciclev10014241m.g Citrus clementina HOM05D006510 ORTHO05D008171 0.0e+00 1090.5 868 67.4
FAN14G1437 Fragaria x ananassa HOM05D006510 ORTHO05D008171 0.0e+00 1082.0 868 65.1
FvH4_6g27600 Fragaria vesca HOM05D006510 ORTHO05D008171 0.0e+00 1081.6 868 65.1
FAN02G4134 Fragaria x ananassa HOM05D006510 ORTHO05D008171 0.0e+00 1080.1 868 65.4
Atru.chr6.2773 Acer truncatum HOM05D006510 ORTHO05D008171 0.0e+00 1075.5 864 65.5
Gorai.006G003700 Gossypium raimondii HOM05D006510 ORTHO05D008171 5.8e-310 1067.4 868 65.1
Gohir.A09G003200 Gossypium hirsutum HOM05D006510 ORTHO05D008171 4.2e-308 1061.2 868 64.6
Manes.07G057100 Manihot esculenta HOM05D006510 ORTHO05D008171 2.4e-303 1045.4 868 65.8
Actinidia03942 Actinidia chinensis HOM05D006510 ORTHO05D008171 4.5e-302 1041.2 825 66.3
Sabra14G0108000 Salix brachista HOM05D006510 ORTHO05D008171 3.8e-301 1038.1 867 63.2
CsaV3_1G037360 Cucumis sativus L. HOM05D006510 ORTHO05D008171 4.2e-300 1034.6 867 63.6
PGR142G2695 Punica granatum HOM05D006510 ORTHO05D008171 1.1e-297 1026.5 866 62.4
Lj8C100T15 Lonicera japonica HOM05D006510 ORTHO05D008171 7.4e-297 1023.8 882 63.5
Nn8g40464 Nelumbo nucifera HOM05D006510 ORTHO05D008171 2.1e-296 1022.3 875 61.8
MELO3C002806.2 Cucumis melo HOM05D006510 ORTHO05D008171 1.8e-295 1019.2 867 62.4
ClCG07G002720 Citrullus lanatus HOM05D006510 ORTHO05D008171 4.0e-295 1018.1 871 62.9
Sopen12g005700 Solanum pennellii HOM05D006510 ORTHO05D008171 6.9e-295 1017.3 862 61.9
Solyc12g013950.2 Solanum lycopersicum HOM05D006510 ORTHO05D008171 2.0e-294 1015.8 862 62.2
Eucgr.K01140 Eucalyptus grandis HOM05D006510 ORTHO05D008171 1.0e-293 1013.4 863 61.8
THA.LOC104823853 Tarenaya hassleriana HOM05D006510 ORTHO05D008171 4.9e-293 1011.1 874 61.7
CAN.G1716.4 Capsicum annuum HOM05D006510 ORTHO05D008171 1.1e-292 1010.0 861 61.3
arahy.Tifrunner.gnm1.ann1.H5IL2E Arachis hypogaea HOM05D006510 ORTHO05D008171 1.9e-292 1009.2 645 80.8
PGSC0003DMG400015368 Solanum tuberosum HOM05D006510 ORTHO05D008171 1.9e-292 1009.2 861 61.6
Nitab4.5_0002027g0190 Nicotiana tabacum HOM05D006510 ORTHO05D008171 4.2e-292 1008.1 847 62.2
Cc05_g08450 Coffea canephora HOM05D006510 ORTHO05D008171 5.5e-292 1007.7 865 62.9
Peaxi162Scf00229g01116 Petunia axillaris HOM05D006510 ORTHO05D008171 9.3e-292 1006.9 858 61.4
Gohir.D09G003000 Gossypium hirsutum HOM05D006510 ORTHO05D008171 3.0e-290 1001.9 868 62.3
DCAR_013276 Daucus carota HOM05D006510 ORTHO05D008171 8.7e-290 1000.3 871 61.7
MBI16_g39629_MAGBIO Magnolia biondii HOM05D006510 ORTHO05D008171 2.8e-288 995.3 873 60.3
PSO478G4451 Papaver somniferum HOM05D006510 ORTHO05D008171 4.2e-284 981.5 871 63.0
Migut.M00272 Erythranthe guttata HOM05D006510 ORTHO05D008171 9.4e-284 980.3 873 60.7
PSO782G3259 Papaver somniferum HOM05D006510 ORTHO05D008171 1.2e-283 979.9 871 60.6
CARHR137800 Cardamine hirsuta HOM05D006510 ORTHO05D008171 2.1e-283 979.2 876 60.2
Sed0011358 Sechium edule HOM05D006510 ORTHO05D008171 2.7e-283 978.8 865 61.0
Carub.0004s2514 Capsella rubella HOM05D006510 ORTHO05D008171 4.6e-283 978.0 875 59.8
AT2G42700 Arabidopsis thaliana HOM05D006510 ORTHO05D008171 8.8e-282 973.8 870 59.0
Sp4g24850 Schrenkiella parvula HOM05D006510 ORTHO05D008171 7.4e-281 970.7 871 59.5
BraA05t19323Z Brassica rapa HOM05D006510 ORTHO05D008171 1.1e-279 966.8 872 60.1
A05p03350 Brassica napus HOM05D006510 ORTHO05D008171 1.8e-279 966.1 870 60.2
AL4G41260 Arabidopsis lyrata HOM05D006510 ORTHO05D008171 2.4e-279 965.7 870 58.2
C04p03920 Brassica napus HOM05D006510 ORTHO05D008171 6.9e-279 964.1 872 59.7
Thhalv10016247m.g Eutrema salsugineum HOM05D006510 ORTHO05D008171 6.9e-279 964.1 875 59.1
Nitab4.5_0006142g0020 Nicotiana tabacum HOM05D006510 ORTHO05D008171 2.5e-276 955.7 847 59.6
Aa31LG1G24480 Aethionema arabicum HOM05D006510 ORTHO05D008171 4.2e-276 954.9 914 56.5
Aqoxy5G02856 Aquilegia oxysepala HOM05D006510 ORTHO05D008171 4.7e-275 951.4 877 58.3
ECA248G1772 Erigeron canadensis HOM05D006510 ORTHO05D008171 1.7e-269 932.9 866 57.4
EL10Ac9g20963 Beta vulgaris HOM05D006510 ORTHO05D008171 2.5e-268 929.1 855 58.2
AUR62041733 Chenopodium quinoa HOM05D006510 ORTHO05D008171 7.2e-268 927.5 854 59.1
Sc12g0003550 Simmondsia chinensis HOM05D006510 ORTHO05D008171 4.4e-265 918.3 807 61.0
Oeu001793.2 Olea europaea HOM05D006510 ORTHO05D008171 2.0e-262 909.4 799 61.3
AUR62029599 Chenopodium quinoa HOM05D006510 ORTHO05D008171 5.9e-262 907.9 848 58.4
Hma1.2p1_0178F.1_g078700 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 8.5e-261 904.0 801 61.7
BolC4t22028H Brassica oleracea HOM05D006510 ORTHO05D008171 2.5e-260 902.5 830 59.0
FAN09G2536 Fragaria x ananassa HOM05D006510 ORTHO05D008171 9.7e-257 890.6 755 63.7
Lsat_1_v5_gn_4_64481 Lactuca sativa HOM05D006510 ORTHO05D008171 1.7e-253 879.8 862 56.0
SGA_v2.0_scaffold9G04837 Striga asiatica HOM05D006510 ORTHO05D008171 4.1e-247 858.6 866 54.3
ATR0796G261 Amborella trichopoda HOM05D006510 ORTHO05D008171 5.9e-246 854.7 850 54.0
Os11g0169100 Oryza sativa ssp. japonica HOM05D006510 ORTHO05D008171 5.9e-246 854.7 864 53.4
Ah.01g004980 Amaranthus hybridus HOM05D006510 ORTHO05D008171 5.0e-245 851.7 826 57.3
unitig_46.g18272 Utricularia gibba HOM05D006510 ORTHO05D008171 1.5e-236 823.5 860 50.7
CDE04G2642 Ceratophyllum demersum HOM05D006510 ORTHO05D008171 5.6e-236 821.6 867 50.2
HPP92_014652 Vanilla planifolia HOM05D006510 ORTHO05D008171 2.9e-232 809.3 857 52.9
vmacro09212 Vaccinium macrocarpon HOM05D006510 ORTHO05D008171 4.4e-217 758.8 810 52.5
Dinv07684 Davidia involucrata HOM05D006510 ORTHO05D008171 3.4e-209 732.6 689 59.9
Zm00001eb297610 Zea mays HOM05D006510 ORTHO05D008171 9.0e-202 708.0 757 49.5
SEGI_27047 Sequoiadendron giganteum HOM05D006510 ORTHO05D008171 1.6e-171 607.4 735 47.5
TAR629G2876 Trochodendron aralioides HOM05D006510 ORTHO05D008171 1.4e-170 604.4 521 60.7
Pp3c9_21860 Physcomitrium patens HOM05D006510 ORTHO05D008171 4.8e-139 499.6 876 36.5
Mapoly0047s0091 Marchantia polymorpha HOM05D006510 ORTHO05D008171 5.0e-136 489.6 845 37.2
SMO164G0050 Selaginella moellendorffii HOM05D006510 ORTHO05D008171 5.7e-132 476.1 849 38.3
SalBow7G4578 Salvia bowleyana HOM05D006510 ORTHO05D008171 5.4e-130 469.5 436 56.9
Cpa.g.sc52.162 Carica papaya HOM05D006510 ORTHO05D008171 1.7e-104 384.8 310 62.6
CBR_g35046 Chara braunii HOM05D006510 ORTHO05D008171 1.2e-100 372.1 1004 29.9
Cpa.g.sc52.161 Carica papaya HOM05D006510 ORTHO05D008171 9.4e-50 203.0 189 63.5
Dinv07685 Davidia involucrata HOM05D006510 ORTHO05D008171 7.0e-29 133.7 100 67.0
TAR629G0105 Trochodendron aralioides HOM05D006510 ORTHO05D008171 1.5e-23 115.9 98 60.2
Cre11.g479200 Chlamydomonas reinhardtii HOM05D006510 ORTHO05D008171 2.8e-22 111.7 590 22.0
VMungo1127G1894 Vigna mungo HOM05D006510 ORTHO05D008171 4.8e-22 110.9 97 56.7
MCO09G591 Micromonas commoda HOM05D006510 ORTHO05D008171 6.5e-19 100.5 587 23.9
Cpa.g.c45723 Carica papaya HOM05D006510 ORTHO05D008171 6.1e-17 94.0 63 69.8
Hund07777 Selenicereus undatus HOM05D006510 ORTHO05D008171 5.7e-15 87.4 65 63.1
unitig_46.g18270 Utricularia gibba HOM05D006510 ORTHO05D008171 1.3e-14 86.3 65 61.5
HanXRQChr09g0251831 Helianthus annuus HOM05D006510 ORTHO05D008171 8.3e-14 83.6 57 68.4
Solyc01g011190.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 1.9e-10 72.4 57 64.9
Solyc01g011180.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 4.3e-10 71.2 57 66.7
arahy.Tifrunner.gnm1.ann1.JPYC3C Arachis hypogaea HOM05D006510 ORTHO05D008171 1.2e-07 63.2 42 66.7
SEGI_32298 Sequoiadendron giganteum HOM05D006510 ORTHO05D008171 1.2e-07 63.2 63 50.8
Lsat_1_v5_gn_9_51101 Lactuca sativa HOM05D003114 ORTHO05D003519 7.5e-07 60.5 34 73.5
BraA03t11594Z Brassica rapa HOM05D006510 ORTHO05D008171 3.7e-06 58.2 101 43.6


User provided reference genes

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