Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_18845_v3 Cicer arietinum L. HOM05D006578 ORTHO05D008100 5.3e-136 487.6 241 100.0
Medtr8g032260 Medicago truncatula HOM05D006578 ORTHO05D008100 1.2e-111 406.8 245 83.7
Phvul.010G094000 Phaseolus vulgaris HOM05D006578 ORTHO05D008100 1.9e-93 346.3 242 74.4
Glyma.07G075100 Glycine max HOM05D006578 ORTHO05D008100 9.5e-93 344.0 245 75.5
Lj3g0025915 Lotus japonicus HOM05D006578 ORTHO05D008100 8.9e-91 337.4 244 71.7
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 4.4e-90 335.1 242 72.7
Psat4g152960 Pisum sativum HOM05D006578 ORTHO05D008100 4.9e-89 331.6 244 69.7
Lalb_Chr04g0256691 Lupinus albus HOM05D006578 ORTHO05D008100 8.1e-84 314.3 241 69.3
Thecc.03G298500 Theobroma cacao HOM05D006578 ORTHO05D008100 1.9e-72 276.6 241 61.8
Ah.07g197460 Amaranthus hybridus HOM05D006578 ORTHO05D008100 1.2e-71 273.9 236 64.8
Cpa.g.sc79.32 Carica papaya HOM05D006578 ORTHO05D008100 8.7e-70 267.7 242 60.7
Cfa012002 Carpinus fangiana HOM05D006578 ORTHO05D008100 8.7e-70 267.7 244 58.2
COL.COLO4_10707 Corchorus olitorius HOM05D006578 ORTHO05D008100 8.7e-70 267.7 242 59.9
Sabra01G0067600 Salix brachista HOM05D006578 ORTHO05D008100 1.5e-69 266.9 234 60.7
CiPaw.11G120900 Carya illinoinensis HOM05D006578 ORTHO05D008100 2.5e-69 266.2 240 60.8
Duzib068G0825 Durio zibethinus HOM05D006578 ORTHO05D008100 5.6e-69 265.0 241 61.0
EL10Ac5g12919 Beta vulgaris HOM05D006578 ORTHO05D008100 7.3e-69 264.6 232 63.8
Atru.chr9.1977 Acer truncatum HOM05D006578 ORTHO05D008100 1.3e-68 263.8 246 57.7
Atru.chr9.1992 Acer truncatum HOM05D006578 ORTHO05D008100 1.3e-68 263.8 246 57.7
Gohir.A05G346600 Gossypium hirsutum HOM05D006578 ORTHO05D008100 1.3e-68 263.8 237 61.6
Potri.001G091300 Populus trichocarpa HOM05D006578 ORTHO05D008100 1.3e-68 263.8 230 60.9
TWI60G1670 Tripterygium wilfordii HOM05D006578 ORTHO05D008100 1.6e-68 263.5 244 57.0
BcaNung04080 Brassica carinata HOM05D006578 ORTHO05D008100 4.8e-68 261.9 247 57.1
Carub.0007s1722 Capsella rubella HOM05D006578 ORTHO05D008100 6.2e-68 261.5 246 57.3
MELO3C016296.2 Cucumis melo HOM05D006578 ORTHO05D008100 6.2e-68 261.5 245 59.6
Ciclev10024562m.g Citrus clementina HOM05D006578 ORTHO05D008100 1.1e-67 260.8 246 57.7
Hma1.2p1_0359F.1_g135230 Hydrangea macrophylla HOM05D006578 ORTHO05D008100 1.1e-67 260.8 228 61.4
Potri.003G140400 Populus trichocarpa HOM05D006578 ORTHO05D008100 1.1e-67 260.8 235 58.3
CsaV3_4G006610 Cucumis sativus L. HOM05D006578 ORTHO05D008100 1.4e-67 260.4 245 60.0
Migut.A00640 Erythranthe guttata HOM05D006578 ORTHO05D008100 4.0e-67 258.8 248 58.1
Dinv37530 Davidia involucrata HOM05D006578 ORTHO05D008100 1.2e-66 257.3 236 60.2
Manes.02G009600 Manihot esculenta HOM05D006578 ORTHO05D008100 1.2e-66 257.3 237 59.5
BraA01t01458Z Brassica rapa HOM05D006578 ORTHO05D008100 1.5e-66 256.9 244 57.4
AT4G23890 Arabidopsis thaliana HOM05D006578 ORTHO05D008100 2.0e-66 256.5 249 56.6
MSTRG.11922 Avicennia marina HOM05D006578 ORTHO05D008100 4.4e-66 255.4 247 57.5
C01p19130 Brassica napus HOM05D006578 ORTHO05D008100 5.8e-66 255.0 247 56.3
BolC1t01839H Brassica oleracea HOM05D006578 ORTHO05D008100 5.8e-66 255.0 247 56.3
Cc08_g16100 Coffea canephora HOM05D006578 ORTHO05D008100 7.6e-66 254.6 232 59.1
Nitab4.5_0001210g0110 Nicotiana tabacum HOM05D006578 ORTHO05D008100 7.6e-66 254.6 234 59.8
BcaNung01096 Brassica carinata HOM05D006578 ORTHO05D008100 9.9e-66 254.2 247 57.1
ClCG07G011600 Citrullus lanatus HOM05D006578 ORTHO05D008100 1.3e-65 253.8 242 59.5
THA.LOC104815081 Tarenaya hassleriana HOM05D006578 ORTHO05D008100 1.7e-65 253.4 253 56.1
AL7G29450 Arabidopsis lyrata HOM05D006578 ORTHO05D008100 2.2e-65 253.1 248 56.0
CARHR231290 Cardamine hirsuta HOM05D006578 ORTHO05D008100 2.9e-65 252.7 241 57.7
AUR62010844 Chenopodium quinoa HOM05D006578 ORTHO05D008100 2.9e-65 252.7 232 61.6
A01p15200 Brassica napus HOM05D006578 ORTHO05D008100 3.8e-65 252.3 236 57.2
Prupe.5G120500 Prunus persica HOM05D006578 ORTHO05D008100 4.9e-65 251.9 250 57.2
PGR042G0620 Punica granatum HOM05D006578 ORTHO05D008100 1.1e-64 250.8 236 59.3
FAN18G3822 Fragaria x ananassa HOM05D006578 ORTHO05D008100 1.4e-64 250.4 247 55.9
CSS0036002 Camellia sinensis var. sinensis HOM05D006578 ORTHO05D008100 5.4e-64 248.4 246 56.9
BcaC09g50934 Brassica carinata HOM05D006578 ORTHO05D008100 7.1e-64 248.1 195 64.6
BraA03t14550Z Brassica rapa HOM05D006578 ORTHO05D008100 7.1e-64 248.1 238 56.3
Thhalv10027518m.g Eutrema salsugineum HOM05D006578 ORTHO05D008100 9.3e-64 247.7 241 55.6
FAN18G0518 Fragaria x ananassa HOM05D006578 ORTHO05D008100 9.3e-64 247.7 247 55.5
FvH4_5g04650 Fragaria vesca HOM05D006578 ORTHO05D008100 1.2e-63 247.3 247 55.5
QL02p030348 Quercus lobata HOM05D006578 ORTHO05D008100 1.2e-63 247.3 187 67.9
Aa31LG6G7150 Aethionema arabicum HOM05D006578 ORTHO05D008100 1.6e-63 246.9 251 55.8
Nitab4.5_0006775g0020 Nicotiana tabacum HOM05D006578 ORTHO05D008100 1.6e-63 246.9 222 61.3
Haze_09067 Corylus avellana HOM05D006578 ORTHO05D008100 4.6e-63 245.4 187 66.3
FAN13G1942 Fragaria x ananassa HOM05D006578 ORTHO05D008100 4.6e-63 245.4 247 55.1
Peaxi162Scf00074g00082 Petunia axillaris HOM05D006578 ORTHO05D008100 6.0e-63 245.0 221 60.6
FAN04G1820 Fragaria x ananassa HOM05D006578 ORTHO05D008100 7.9e-63 244.6 247 55.1
Sopen08g030660 Solanum pennellii HOM05D006578 ORTHO05D008100 1.3e-62 243.8 236 57.2
A03p54830 Brassica napus HOM05D006578 ORTHO05D008100 3.9e-62 242.3 238 56.3
Oeu009960.1 Olea europaea HOM05D006578 ORTHO05D008100 3.9e-62 242.3 233 56.2
CAN.G1804.8 Capsicum annuum HOM05D006578 ORTHO05D008100 5.1e-62 241.9 236 57.2
FAN08G0426 Fragaria x ananassa HOM05D006578 ORTHO05D008100 5.1e-62 241.9 247 54.3
Sed0010985 Sechium edule HOM05D006578 ORTHO05D008100 5.1e-62 241.9 190 65.8
PGSC0003DMG400044958 Solanum tuberosum HOM05D006578 ORTHO05D008100 8.7e-62 241.1 237 55.7
Sp7g21850 Schrenkiella parvula HOM05D006578 ORTHO05D008100 1.1e-61 240.7 246 53.7
Gorai.012G073800 Gossypium raimondii HOM05D006578 ORTHO05D008100 4.3e-61 238.8 237 57.0
TAR633G0540 Trochodendron aralioides HOM05D006578 ORTHO05D008100 4.3e-61 238.8 248 56.5
Lsat_1_v5_gn_3_10861 Lactuca sativa HOM05D006578 ORTHO05D008100 9.6e-61 237.7 249 54.6
Solyc08g082400.1 Solanum lycopersicum HOM05D006578 ORTHO05D008100 1.3e-60 237.3 239 55.2
Gohir.D04G065600 Gossypium hirsutum HOM05D006578 ORTHO05D008100 2.1e-60 236.5 237 56.5
unitig_32.g10973 Utricularia gibba HOM05D006578 ORTHO05D008100 3.6e-60 235.7 246 54.9
HanXRQChr17g0534801 Helianthus annuus HOM05D006578 ORTHO05D008100 1.5e-58 230.3 237 57.0
DCAR_029888 Daucus carota HOM05D006578 ORTHO05D008100 7.6e-58 228.0 220 56.4
Lj2P167T19 Lonicera japonica HOM05D006578 ORTHO05D008100 4.9e-57 225.3 191 63.4
Actinidia27316 Actinidia chinensis HOM05D006578 ORTHO05D008100 8.4e-57 224.6 181 64.1
ATR0796G340 Amborella trichopoda HOM05D006578 ORTHO05D008100 5.5e-56 221.9 241 52.7
AUR62019843 Chenopodium quinoa HOM05D006578 ORTHO05D008100 1.8e-54 216.9 232 56.0
ECA246G0449 Erigeron canadensis HOM05D001832 ORTHO05D001861 1.9e-53 213.4 219 54.8
Hma1.2p1_0359F.1_g135240 Hydrangea macrophylla HOM05D006578 ORTHO05D008100 4.8e-52 208.8 133 75.2
SEGI_09764 Sequoiadendron giganteum HOM05D006578 ORTHO05D008100 1.8e-51 206.8 186 55.4
SEGI_13573 Sequoiadendron giganteum HOM05D006578 ORTHO05D008100 1.8e-51 206.8 186 55.4
Aqoxy2G01516 Aquilegia oxysepala HOM05D006578 ORTHO05D008100 1.5e-50 203.8 230 48.7
PSO210G4984 Papaver somniferum HOM05D006578 ORTHO05D008100 1.7e-49 200.3 270 46.3
PSO761G0627 Papaver somniferum HOM05D006578 ORTHO05D008100 2.9e-49 199.5 266 46.6
Sabra03G0101400 Salix brachista HOM05D006578 ORTHO05D008100 6.5e-49 198.4 235 48.5
Zm00001eb224490 Zea mays HOM05D006578 ORTHO05D008100 3.2e-48 196.1 186 55.4
FAN13G3291 Fragaria x ananassa HOM05D006578 ORTHO05D008100 4.6e-47 192.2 241 49.0
Os07g0196200 Oryza sativa ssp. japonica HOM05D006578 ORTHO05D008100 3.0e-46 189.5 205 50.7
GSVIVG01019536001 Vitis vinifera HOM05D006578 ORTHO05D008100 6.5e-41 171.8 233 48.1
AagrBONN_evm.TU.Sc2ySwM_117.36 Anthoceros agrestis HOM05D006578 ORTHO05D008100 1.4e-40 170.6 232 43.1
Pp3c11_19730 Physcomitrium patens HOM05D006578 ORTHO05D008100 5.5e-40 168.7 190 47.9
Mapoly0067s0043 Marchantia polymorpha HOM05D006578 ORTHO05D008100 4.6e-39 165.6 193 49.2
CBR_g28643 Chara braunii HOM05D006578 ORTHO05D008100 2.8e-36 156.4 190 50.0
SMO146G0113 Selaginella moellendorffii HOM05D006578 ORTHO05D008100 2.7e-31 139.8 191 43.5
Glyma.03G015000 Glycine max HOM05D006578 ORTHO05D008100 3.3e-29 132.9 130 57.7
Lj1g0003243 Lotus japonicus HOM05D006578 ORTHO05D008100 8.2e-28 128.3 144 52.8
CiPaw.12G082500 Carya illinoinensis HOM05D006578 ORTHO05D008100 1.3e-25 120.9 227 37.4
Glyma.09G263100 Glycine max HOM05D006578 ORTHO05D008100 6.5e-25 118.6 145 48.3
Medtr7g076620 Medicago truncatula HOM05D006578 ORTHO05D008100 5.5e-24 115.5 140 49.3
arahy.Tifrunner.gnm1.ann1.UYM9MT Arachis hypogaea HOM05D006578 ORTHO05D008100 1.6e-23 114.0 143 49.7
C07p53190 Brassica napus HOM05D006578 ORTHO05D008100 3.6e-23 112.8 164 44.5
arahy.Tifrunner.gnm1.ann1.6WXN94 Arachis hypogaea HOM05D006578 ORTHO05D008100 4.7e-23 112.5 143 50.3
Psat3g111760 Pisum sativum HOM05D006578 ORTHO05D008100 7.9e-23 111.7 144 47.2
TPR.G17579 Trifolium pratense HOM05D006578 ORTHO05D008100 7.9e-23 111.7 134 48.5
BcaNung04242 Brassica carinata HOM05D006578 ORTHO05D008100 1.0e-22 111.3 164 43.9
BolC7t45814H Brassica oleracea HOM05D006578 ORTHO05D008100 1.0e-22 111.3 164 43.9
TWI81G0713 Tripterygium wilfordii HOM05D006578 ORTHO05D008100 3.3e-21 106.3 127 47.2
SalBow1G4365 Salvia bowleyana HOM05D006578 ORTHO05D008100 7.4e-21 105.1 241 36.1
SalBow1G5827 Salvia bowleyana HOM05D006578 ORTHO05D008100 7.4e-21 105.1 241 36.1
VMungo1383G2377 Vigna mungo HOM05D006578 ORTHO05D008100 9.7e-21 104.8 143 44.8
Glyma.18G229100 Glycine max HOM05D006578 ORTHO05D008100 1.3e-20 104.4 151 45.7
Sabra15G0075700 Salix brachista HOM05D000345 ORTHO05D000215 1.8e-19 100.5 103 55.3
Ca_07882_v3 Cicer arietinum L. HOM05D006578 ORTHO05D008100 2.4e-19 100.1 129 47.3
Phvul.008G068900 Phaseolus vulgaris HOM05D006578 ORTHO05D008100 5.3e-19 99.0 147 43.5
Sc07g0010050 Simmondsia chinensis HOM05D006578 ORTHO05D008100 1.7e-17 94.0 130 43.8
HPP92_001215 Vanilla planifolia HOM05D006578 ORTHO05D008100 2.9e-17 93.2 133 48.1
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 6.5e-17 92.0 169 39.6
Nn4g25270 Nelumbo nucifera HOM05D006578 ORTHO05D008100 1.6e-10 70.9 124 43.5
Oeu054024.1 Olea europaea HOM05D006578 ORTHO05D008100 1.6e-10 70.9 64 54.7
Sabra10G0172600 Salix brachista HOM05D006578 ORTHO05D008100 1.0e-06 58.2 55 54.5


User provided reference genes

Program Settings