Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_18832_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 1.8e-168 595.9 313 100.0
Ca_30091_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 1.8e-168 595.9 313 100.0
Psat7g160280 Pisum sativum HOM05D003841 ORTHO05D004602 3.9e-131 471.9 314 81.5
TPR.G34029 Trifolium pratense HOM05D003841 ORTHO05D004602 9.4e-125 450.7 316 78.8
Medtr4g081550 Medicago truncatula HOM05D003841 ORTHO05D004602 5.5e-117 424.9 314 75.8
arahy.Tifrunner.gnm1.ann1.SIF99T Arachis hypogaea HOM05D003841 ORTHO05D004602 7.0e-88 328.2 328 60.1
Lj3g0010893 Lotus japonicus HOM05D003841 ORTHO05D004602 8.0e-84 314.7 327 59.3
arahy.Tifrunner.gnm1.ann1.GYU1HX Arachis hypogaea HOM05D003841 ORTHO05D004602 1.8e-83 313.5 330 58.2
Glyma.06G262900 Glycine max HOM05D003841 ORTHO05D004602 6.4e-81 305.1 328 56.4
Lalb_Chr01g0006261 Lupinus albus HOM05D003841 ORTHO05D004602 4.6e-79 298.9 320 56.6
Phvul.011G146700 Phaseolus vulgaris HOM05D003841 ORTHO05D004602 1.0e-78 297.7 324 55.9
VMungo1127G0850 Vigna mungo HOM05D003841 ORTHO05D004602 8.6e-78 294.7 324 55.6
Glyma.12G139800 Glycine max HOM05D003841 ORTHO05D004602 1.1e-75 287.7 340 55.0
Lalb_Chr22g0357311 Lupinus albus HOM05D003841 ORTHO05D004602 6.0e-71 271.9 324 56.5
QL08p014515 Quercus lobata HOM05D003841 ORTHO05D004602 3.3e-53 213.0 327 43.4
Glyma.13G284700 Glycine max HOM05D003841 ORTHO05D004602 4.3e-53 212.6 326 44.5
CiPaw.12G124700 Carya illinoinensis HOM05D003841 ORTHO05D004602 5.3e-51 205.7 318 43.4
CSS0048456 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 1.3e-49 201.1 331 39.9
Lj1A861T58 Lonicera japonica HOM05D003841 ORTHO05D004602 6.4e-49 198.7 328 42.1
Peaxi162Scf01365g00027 Petunia axillaris HOM05D003841 ORTHO05D004602 2.4e-48 196.8 340 41.2
Dinv22328 Davidia involucrata HOM05D003841 ORTHO05D004602 5.4e-48 195.7 340 41.5
Dinv02831 Davidia involucrata HOM05D003841 ORTHO05D004602 2.7e-47 193.4 335 42.1
Nitab4.5_0003052g0050 Nicotiana tabacum HOM05D003841 ORTHO05D004602 1.0e-46 191.4 336 41.7
Lj3g0010292 Lotus japonicus HOM05D003841 ORTHO05D004602 1.3e-46 191.0 325 42.8
Nitab4.5_0000552g0100 Nicotiana tabacum HOM05D003841 ORTHO05D004602 6.6e-46 188.7 341 41.3
Glyma.12G216500 Glycine max HOM05D003841 ORTHO05D004602 8.7e-46 188.3 320 41.9
MD11G1230100 Malus domestica HOM05D003841 ORTHO05D004602 1.9e-45 187.2 326 42.0
MD03G1215500 Malus domestica HOM05D003841 ORTHO05D004602 4.3e-45 186.0 319 42.3
FAN11G1553 Fragaria x ananassa HOM05D003841 ORTHO05D004602 1.3e-44 184.5 322 42.5
FvH4_3g21510 Fragaria vesca HOM05D003841 ORTHO05D004602 2.8e-44 183.3 325 43.4
Lj8A163G39 Lonicera japonica HOM05D003841 ORTHO05D004602 3.6e-44 183.0 323 39.6
Prupe.4G197300 Prunus persica HOM05D003841 ORTHO05D004602 6.2e-44 182.2 327 42.5
CANSAT11G1059 Cannabis sativa HOM05D003841 ORTHO05D004602 9.0e-43 178.3 320 39.1
Duzib213G0276 Durio zibethinus HOM05D003841 ORTHO05D004602 9.0e-43 178.3 329 40.7
FAN21G0547 Fragaria x ananassa HOM05D003841 ORTHO05D004602 9.0e-43 178.3 326 43.3
Ciclev10008955m.g Citrus clementina HOM05D003841 ORTHO05D004602 1.2e-42 177.9 326 41.7
AUR62029272 Chenopodium quinoa HOM05D003841 ORTHO05D004602 2.0e-42 177.2 325 41.8
FAN25G3758 Fragaria x ananassa HOM05D003841 ORTHO05D004602 2.0e-42 177.2 320 42.8
AUR62041149 Chenopodium quinoa HOM05D003841 ORTHO05D004602 2.6e-42 176.8 325 42.5
COL.COLO4_09535 Corchorus olitorius HOM05D003841 ORTHO05D004602 3.4e-42 176.4 332 42.2
Sabra16G0281100 Salix brachista HOM05D003841 ORTHO05D004602 5.8e-42 175.6 337 38.3
TAR627G0073 Trochodendron aralioides HOM05D003841 ORTHO05D004602 5.8e-42 175.6 346 38.7
EL10Ac4g08014 Beta vulgaris HOM05D003841 ORTHO05D004602 1.7e-41 174.1 319 41.1
Sopen07g032000 Solanum pennellii HOM05D003841 ORTHO05D004602 4.9e-41 172.6 346 39.9
Gohir.A11G281600 Gossypium hirsutum HOM05D003841 ORTHO05D004602 1.1e-40 171.4 337 39.8
TAR271G0006 Trochodendron aralioides HOM05D003841 ORTHO05D004602 1.1e-40 171.4 348 36.8
Cfa020471 Carpinus fangiana HOM05D003841 ORTHO05D004602 1.9e-40 170.6 318 40.3
Solyc07g063870.3 Solanum lycopersicum HOM05D003841 ORTHO05D004602 4.2e-40 169.5 343 38.8
CSS0046033 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 5.4e-40 169.1 285 39.3
Manes.15G079400 Manihot esculenta HOM05D003841 ORTHO05D004602 5.4e-40 169.1 341 38.1
arahy.Tifrunner.gnm1.ann1.SKE74K Arachis hypogaea HOM05D003841 ORTHO05D004602 2.7e-39 166.8 328 41.2
PGSC0003DMG400019273 Solanum tuberosum HOM05D003841 ORTHO05D000515 2.7e-39 166.8 317 39.7
Actinidia35303 Actinidia chinensis HOM05D003841 ORTHO05D004602 3.5e-39 166.4 351 36.8
arahy.Tifrunner.gnm1.ann1.SRRR95 Arachis hypogaea HOM05D003841 ORTHO05D004602 4.6e-39 166.0 334 41.0
Thecc.07G059100 Theobroma cacao HOM05D003841 ORTHO05D004602 6.0e-39 165.6 329 37.1
FAN16G3040 Fragaria x ananassa HOM05D003841 ORTHO05D004602 7.9e-39 165.2 326 41.1
Hund23360 Selenicereus undatus HOM05D003841 ORTHO05D004602 1.8e-38 164.1 320 39.7
TAR271G0005 Trochodendron aralioides HOM05D003841 ORTHO05D004602 1.8e-38 164.1 348 36.2
RhsimUnG0254800 Rhododendron simsii HOM05D003841 ORTHO05D004602 2.3e-38 163.7 340 38.8
Ah.06g183230 Amaranthus hybridus HOM05D003841 ORTHO05D004602 3.0e-38 163.3 313 39.0
Cc05_g12980 Coffea canephora HOM05D003841 ORTHO05D004602 3.0e-38 163.3 334 37.4
Haze_09572 Corylus avellana HOM05D003841 ORTHO05D004602 3.9e-38 162.9 337 37.7
MELO3C018156.2 Cucumis melo HOM05D003841 ORTHO05D004602 5.1e-38 162.5 333 39.3
TWI39G0875 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 5.1e-38 162.5 341 38.4
Gohir.D11G294200 Gossypium hirsutum HOM05D003841 ORTHO05D004602 8.7e-38 161.8 337 38.0
Potri.001G410100 Populus trichocarpa HOM05D003841 ORTHO05D004602 8.7e-38 161.8 329 37.1
Rhsim06G0190700 Rhododendron simsii HOM05D003841 ORTHO05D004602 1.5e-37 161.0 333 38.4
Gorai.007G317200 Gossypium raimondii HOM05D003841 ORTHO05D004602 1.9e-37 160.6 337 38.0
Potri.011G130000 Populus trichocarpa HOM05D003841 ORTHO05D004602 5.6e-37 159.1 330 37.3
Rhsim06G0189000 Rhododendron simsii HOM05D003841 ORTHO05D004602 5.6e-37 159.1 333 38.1
MSTRG.6876 Avicennia marina HOM05D003841 ORTHO05D004602 1.6e-36 157.5 319 36.4
Nn1g06911 Nelumbo nucifera HOM05D003841 ORTHO05D004602 3.7e-36 156.4 333 37.2
Duzib170G0031 Durio zibethinus HOM05D003841 ORTHO05D004602 8.1e-36 155.2 328 38.1
DCAR_022502 Daucus carota HOM05D003841 ORTHO05D004602 4.0e-35 152.9 335 38.5
Sed0013156 Sechium edule HOM05D003841 ORTHO05D004602 4.0e-35 152.9 322 37.0
Gohir.D13G147500 Gossypium hirsutum HOM05D003841 ORTHO05D004602 5.3e-35 152.5 330 37.9
Gorai.013G165300 Gossypium raimondii HOM05D003841 ORTHO05D004602 5.3e-35 152.5 330 37.6
Hund02157 Selenicereus undatus HOM05D003841 ORTHO05D004602 9.0e-35 151.8 310 38.1
TWI38G0390 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 1.2e-34 151.4 344 36.0
ClCG05G014990 Citrullus lanatus HOM05D003841 ORTHO05D004602 1.5e-34 151.0 326 36.8
CsaV3_3G022650 Cucumis sativus L. HOM05D003841 ORTHO05D004602 1.5e-34 151.0 339 38.1
Lsat_1_v5_gn_7_107821 Lactuca sativa HOM05D003841 ORTHO05D004602 2.0e-34 150.6 315 38.1
Gohir.A13G142900 Gossypium hirsutum HOM05D003841 ORTHO05D004602 3.4e-34 149.8 328 37.5
Oeu005438.1 Olea europaea HOM05D003841 ORTHO05D004602 3.4e-34 149.8 332 35.5
Eucgr.F03390 Eucalyptus grandis HOM05D003841 ORTHO05D004602 5.8e-34 149.1 338 38.2
HanXRQChr11g0332121 Helianthus annuus HOM05D003841 ORTHO05D004602 1.7e-33 147.5 333 34.8
RcHm_v2.0_Chr5g0036951 Rosa chinensis HOM05D003841 ORTHO05D004602 1.9e-32 144.1 233 44.2
Sc03g0009430 Simmondsia chinensis HOM05D003841 ORTHO05D004602 3.2e-32 143.3 322 33.9
vmacro11787 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 4.2e-32 142.9 350 34.6
GSVIVG01014549001 Vitis vinifera HOM05D003841 ORTHO05D004602 2.1e-31 140.6 230 42.6
PSO675G5063 Papaver somniferum HOM05D003841 ORTHO05D004602 3.5e-31 139.8 339 35.1
Migut.H01878 Erythranthe guttata HOM05D003841 ORTHO05D004602 1.0e-30 138.3 334 35.9
Actinidia10692 Actinidia chinensis HOM05D003841 ORTHO05D004602 1.3e-30 137.9 235 40.9
Aa31LG3G10490 Aethionema arabicum HOM05D003841 ORTHO05D004602 1.3e-30 137.9 322 36.0
THA.LOC104799894 Tarenaya hassleriana HOM05D003841 ORTHO05D004602 3.9e-30 136.3 322 33.9
AL8G29910 Arabidopsis lyrata HOM05D003841 ORTHO05D004602 1.5e-29 134.4 329 35.9
SalBow7G4379 Salvia bowleyana HOM05D003841 ORTHO05D004602 1.9e-29 134.0 329 34.3
DCAR_010006 Daucus carota HOM05D003841 ORTHO05D004602 4.3e-29 132.9 320 35.3
SGA_v2.0_scaffold9G05000 Striga asiatica HOM05D003841 ORTHO05D004602 4.3e-29 132.9 323 36.5
PSO541G4862 Papaver somniferum HOM05D003841 ORTHO05D004602 1.3e-28 131.3 341 34.6
Carub.0008s1482 Capsella rubella HOM05D003841 ORTHO05D004602 4.8e-28 129.4 329 37.1
ECA236G3199 Erigeron canadensis HOM05D003841 ORTHO05D004602 6.2e-28 129.0 326 34.0
Oeu052335.1 Olea europaea HOM05D003841 ORTHO05D004602 3.1e-27 126.7 327 32.7
TAR623G1765 Trochodendron aralioides HOM05D003841 ORTHO05D004602 6.9e-27 125.6 331 34.7
MBI18_g38396_MAGBIO Magnolia biondii HOM05D003841 ORTHO05D004602 9.0e-27 125.2 329 37.1
vmacro09595 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 9.0e-27 125.2 471 28.9
SGA_v2.0_scaffold70G23570 Striga asiatica HOM05D003841 ORTHO05D004602 1.2e-26 124.8 314 33.8
AT5G54540 Arabidopsis thaliana HOM05D003841 ORTHO05D004602 2.0e-26 124.0 329 34.7
Thhalv10014255m.g Eutrema salsugineum HOM05D003841 ORTHO05D004602 3.4e-26 123.2 332 35.2
Zm00001eb171810 Zea mays HOM05D003841 ORTHO05D004602 4.5e-26 122.9 338 33.7
HPP92_004148 Vanilla planifolia HOM05D003841 ORTHO05D004602 5.8e-26 122.5 339 32.2
CARHR267820 Cardamine hirsuta HOM05D003841 ORTHO05D004602 7.6e-26 122.1 326 35.0
Actinidia05162 Actinidia chinensis HOM05D003841 ORTHO05D004602 1.3e-25 121.3 348 32.5
Aqoxy1G03844 Aquilegia oxysepala HOM05D003841 ORTHO05D004602 1.3e-25 121.3 353 31.2
Migut.M01831 Erythranthe guttata HOM05D003841 ORTHO05D004602 1.3e-25 121.3 320 34.1
Zm00001eb413050 Zea mays HOM05D003841 ORTHO05D004602 1.7e-25 120.9 340 33.5
MSTRG.14400 Avicennia marina HOM05D003841 ORTHO05D004602 3.8e-25 119.8 360 32.2
DCAR_008683 Daucus carota HOM05D003841 ORTHO05D004602 6.5e-25 119.0 313 31.3
VMungo1027G0001 Vigna mungo HOM05D003841 ORTHO05D004602 1.9e-24 117.5 213 40.4
BraA10t43276Z Brassica rapa HOM05D003841 ORTHO05D004602 7.1e-24 115.5 322 31.4
Sp6g16510 Schrenkiella parvula HOM05D003841 ORTHO05D004602 9.3e-24 115.2 333 33.3
A10p11770 Brassica napus HOM05D003841 ORTHO05D004602 1.6e-23 114.4 322 32.9
A02p10210 Brassica napus HOM05D003841 ORTHO05D004602 2.7e-23 113.6 318 33.0
Gorai.007G317300 Gossypium raimondii HOM05D003841 ORTHO05D004602 4.6e-23 112.8 273 36.6
C02p16910 Brassica napus HOM05D003841 ORTHO05D004602 7.9e-23 112.1 321 33.6
BcaB08g35813 Brassica carinata HOM05D003841 ORTHO05D004602 1.0e-22 111.7 319 32.0
Gohir.D11G294233 Gossypium hirsutum HOM05D003841 ORTHO05D004602 1.8e-22 110.9 282 35.8
CAN.G64.40 Capsicum annuum HOM05D003841 ORTHO05D004602 6.7e-22 109.0 129 47.3
BcaC04g20329 Brassica carinata HOM05D003841 ORTHO05D004602 8.7e-22 108.6 322 31.1
C09p44880 Brassica napus HOM05D003841 ORTHO05D004602 1.1e-21 108.2 322 31.1
Os08g0179900 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D004602 1.5e-21 107.8 261 33.0
Gohir.A11G281650 Gossypium hirsutum HOM05D003841 ORTHO05D004602 3.3e-21 106.7 277 35.4
HPP92_005894 Vanilla planifolia HOM05D003841 ORTHO05D004602 3.3e-21 106.7 322 30.1
CDE05G3666 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 5.7e-21 105.9 328 31.1
PSO675G0068 Papaver somniferum HOM05D003841 ORTHO05D004602 7.4e-21 105.5 323 33.4
BraA02t06092Z Brassica rapa HOM05D003841 ORTHO05D004602 2.2e-20 104.0 318 32.1
Sabra11G0117400 Salix brachista HOM05D003841 ORTHO05D004602 3.7e-20 103.2 272 36.0
ATR0804G047 Amborella trichopoda HOM05D003841 ORTHO05D004602 4.8e-20 102.8 333 30.0
BolC9t57359H Brassica oleracea HOM05D003841 ORTHO05D004602 1.1e-19 101.7 333 30.0
PSO541G5517 Papaver somniferum HOM05D003841 ORTHO05D004602 1.8e-19 100.9 229 36.7
unitig_746.g26819 Utricularia gibba HOM05D003841 ORTHO05D004602 2.4e-19 100.5 259 34.4
unitig_899.g15555 Utricularia gibba HOM05D003841 ORTHO05D004602 6.9e-19 99.0 331 29.9
Sed0016497 Sechium edule HOM05D003841 ORTHO05D004602 2.6e-18 97.1 204 36.3
Oeu052334.1 Olea europaea HOM05D003841 ORTHO05D004602 7.7e-18 95.5 234 32.9
MELO3C016604.2 Cucumis melo HOM05D003841 ORTHO05D004602 5.0e-17 92.8 362 27.3
BcaB05g22143 Brassica carinata HOM05D003841 ORTHO05D004602 3.2e-16 90.1 316 30.1
Cfa021072 Carpinus fangiana HOM05D003841 ORTHO05D004602 1.6e-15 87.8 117 47.9
Lsat_1_v5_gn_2_59361 Lactuca sativa HOM05D003841 ORTHO05D004602 1.6e-15 87.8 169 38.5
Cpa.g.sc80.126 Carica papaya HOM05D003841 ORTHO05D004602 2.1e-15 87.4 185 39.5
CsaV3_3G005690 Cucumis sativus L. HOM05D003841 ORTHO05D004602 3.6e-15 86.7 358 27.1
CAN.G1160.11 Capsicum annuum HOM05D003841 ORTHO05D004602 4.6e-15 86.3 218 30.7
PSO339G6399 Papaver somniferum HOM05D003841 ORTHO05D004602 4.6e-15 86.3 344 25.6
ClCG10G006140 Citrullus lanatus HOM05D003841 ORTHO05D004602 6.1e-15 85.9 293 29.7
PSO384G0968 Papaver somniferum HOM05D003841 ORTHO05D004602 1.0e-14 85.1 342 26.3
Sed0013484 Sechium edule HOM05D003841 ORTHO05D004602 6.7e-14 82.4 277 28.9
CDE05G3612 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 2.0e-13 80.9 323 29.1
Os03g0201000 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D049799 2.8e-12 77.0 360 27.2
CAN.G22.51 Capsicum annuum HOM05D000121 ORTHO05D000102 1.4e-11 74.7 137 37.2
CAN.G952.3 Capsicum annuum HOM05D003841 ORTHO05D004602 3.1e-11 73.6 189 34.4
Oeu052338.1 Olea europaea HOM05D003841 ORTHO05D004602 6.9e-11 72.4 217 31.8
Phvul.005G089400 Phaseolus vulgaris HOM05D003841 ORTHO05D004602 2.0e-10 70.9 83 45.8
Ah.04g165190 Amaranthus hybridus HOM05D003841 ORTHO05D004602 7.7e-10 68.9 207 32.9
Sabra16G0276700 Salix brachista HOM05D006433 ORTHO05D005382 1.0e-09 68.6 125 40.0
PGR031G0981 Punica granatum HOM05D003841 ORTHO05D004602 3.8e-09 66.6 154 31.8
Pp3c17_23830 Physcomitrium patens HOM05D039964 ORTHO05D002809 5.5e-08 62.8 360 23.9
Cpa.g.c47761 Carica papaya HOM05D003841 ORTHO05D004602 9.4e-08 62.0 119 38.7
SEGI_39337 Sequoiadendron giganteum HOM05D002766 ORTHO05D002809 9.4e-08 62.0 273 28.2
VMungo1080G1564 Vigna mungo HOM05D003841 ORTHO05D004602 7.9e-07 58.9 169 28.4
SEGI_16254 Sequoiadendron giganteum HOM05D002766 ORTHO05D002809 1.0e-06 58.5 341 24.0


User provided reference genes

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