Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 9.6e-198 693.3 361 100.0
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 4.2e-177 624.8 362 90.1
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 4.2e-177 624.8 361 91.4
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 3.5e-176 621.7 362 90.3
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 2.5e-169 599.0 363 86.2
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 2.3e-167 592.4 363 85.4
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 8.7e-167 590.5 343 87.5
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 6.3e-165 584.3 338 87.9
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 2.2e-162 575.9 387 79.6
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 1.1e-161 573.5 362 82.6
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 1.2e-152 543.5 348 81.0
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 3.6e-152 542.0 363 77.4
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 5.1e-151 538.1 342 79.5
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 6.7e-151 537.7 347 79.0
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 1.1e-150 537.0 347 79.5
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 1.5e-150 536.6 369 74.8
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 3.3e-150 535.4 338 79.9
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 3.3e-150 535.4 316 84.5
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 3.3e-150 535.4 361 76.5
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 4.4e-150 535.0 336 80.4
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 1.7e-149 533.1 361 76.2
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 4.8e-149 531.6 317 83.3
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 4.8e-149 531.6 332 80.7
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 4.8e-149 531.6 339 79.4
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 1.8e-148 529.6 339 78.5
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 4.1e-148 528.5 339 79.1
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 7.0e-148 527.7 372 73.4
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 7.0e-148 527.7 345 77.4
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 7.0e-148 527.7 345 77.4
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 9.1e-148 527.3 359 77.2
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 1.2e-147 526.9 329 80.9
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 1.2e-147 526.9 359 75.2
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 1.6e-147 526.6 351 77.5
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 2.0e-147 526.2 359 76.6
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 2.6e-147 525.8 359 75.5
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 2.6e-147 525.8 348 77.9
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 4.5e-147 525.0 349 77.4
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 1.0e-146 523.9 349 75.9
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 1.3e-146 523.5 308 85.1
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 2.2e-146 522.7 343 77.8
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 5.0e-146 521.5 335 77.3
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 6.5e-146 521.2 365 73.7
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 8.5e-146 520.8 349 77.4
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 1.1e-145 520.4 349 77.4
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 2.5e-145 519.2 331 77.3
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 2.5e-145 519.2 336 75.6
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 2.5e-145 519.2 389 71.2
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 7.2e-145 517.7 355 75.2
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 9.4e-145 517.3 348 77.0
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 1.2e-144 516.9 332 78.9
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 1.6e-144 516.5 354 74.3
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 2.7e-144 515.8 364 75.3
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 8.0e-144 514.2 348 77.0
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 8.0e-144 514.2 348 77.0
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 8.0e-144 514.2 348 77.0
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 8.0e-144 514.2 323 79.6
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 1.0e-143 513.8 353 72.8
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 1.0e-143 513.8 342 77.2
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 1.4e-143 513.5 348 76.1
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.4e-143 513.5 327 79.8
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.4e-143 513.5 327 79.8
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 1.8e-143 513.1 349 76.2
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 3.0e-143 512.3 348 75.9
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 4.0e-143 511.9 345 75.7
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 4.0e-143 511.9 345 75.7
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 4.0e-143 511.9 345 75.7
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 4.0e-143 511.9 333 77.5
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 5.2e-143 511.5 348 75.9
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 6.7e-143 511.1 348 75.9
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 6.7e-143 511.1 348 75.9
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 1.5e-142 510.0 350 75.7
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 2.0e-142 509.6 366 72.7
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 7.5e-142 507.7 351 75.5
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 9.7e-142 507.3 363 73.8
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 1.3e-141 506.9 317 81.1
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 2.8e-141 505.8 352 72.4
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 4.8e-141 505.0 325 77.5
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 6.3e-141 504.6 358 73.5
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 8.2e-141 504.2 341 76.0
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 5.3e-140 501.5 312 80.8
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 7.0e-140 501.1 347 74.4
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 7.0e-140 501.1 336 75.0
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 2.0e-139 499.6 331 75.5
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 1.0e-138 497.3 325 78.2
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 1.3e-138 496.9 316 77.8
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 1.7e-138 496.5 296 80.7
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 2.9e-138 495.7 335 75.8
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 6.5e-138 494.6 290 84.1
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 8.5e-138 494.2 314 77.4
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 2.5e-137 492.7 311 78.1
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 4.2e-137 491.9 365 71.2
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 5.5e-137 491.5 350 72.0
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 9.4e-137 490.7 334 76.6
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 6.1e-136 488.0 297 85.2
Glyma.07G225600 Glycine max HOM05D001391 ORTHO05D005432 1.8e-135 486.5 280 89.6
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 2.0e-134 483.0 365 70.1
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 8.3e-133 477.6 345 73.6
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 2.4e-132 476.1 297 78.5
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 2.4e-132 476.1 341 71.3
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 2.7e-131 472.6 341 71.8
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 3.5e-131 472.2 336 74.7
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 5.9e-131 471.5 320 71.2
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 1.3e-130 470.3 332 73.2
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 1.5e-129 466.8 345 68.4
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 7.2e-129 464.5 323 73.1
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 2.1e-128 463.0 377 66.0
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 3.6e-128 462.2 338 71.9
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 4.7e-128 461.8 324 73.1
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 6.1e-128 461.5 319 72.7
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 8.8e-127 457.6 361 69.0
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 4.1e-124 448.7 358 67.6
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 2.0e-123 446.4 313 72.5
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 2.7e-123 446.0 330 67.9
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 1.3e-122 443.7 343 65.6
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 4.3e-121 438.7 298 76.8
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 9.5e-121 437.6 401 59.9
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 6.8e-119 431.4 344 67.2
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 2.0e-118 429.9 293 72.0
Cpa.g.sc1.121 Carica papaya HOM05D001391 ORTHO05D005432 1.3e-117 427.2 257 84.8
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 1.9e-113 413.3 318 71.1
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 1.8e-111 406.8 348 62.9
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 1.8e-111 406.8 348 62.9
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 2.6e-110 402.9 349 63.0
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 2.9e-109 399.4 353 61.8
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 1.9e-108 396.7 293 69.3
Solyc05g012340.4 Solanum lycopersicum HOM05D001391 ORTHO05D005432 5.4e-108 395.2 239 82.8
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 4.3e-105 385.6 309 63.8
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 9.5e-105 384.4 244 78.3
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 1.2e-102 377.5 243 77.8
Rhsim12G0074900 Rhododendron simsii HOM05D001391 ORTHO05D005432 4.4e-102 375.6 296 67.2
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 2.1e-91 340.1 229 75.5
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 6.9e-87 325.1 228 73.2
CSS0036366 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.1e-84 317.8 235 71.1
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 4.2e-84 315.8 211 71.1
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 2.1e-83 313.5 347 52.7
Eucgr.B03159 Eucalyptus grandis HOM05D001391 ORTHO05D005432 7.9e-75 285.0 197 76.1
Gohir.D12G164650 Gossypium hirsutum HOM05D001391 ORTHO05D005432 3.3e-73 279.6 262 60.3
HanXRQChr08g0223901 Helianthus annuus HOM05D001391 ORTHO05D005432 9.3e-68 261.5 176 76.7
Gorai.008G177300 Gossypium raimondii HOM05D001391 ORTHO05D005432 1.9e-60 237.3 167 73.7
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 2.5e-60 236.9 175 69.1
SEGI_41081 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.7e-43 180.3 125 69.6
SEGI_06703 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 7.9e-43 178.7 128 68.0
SEGI_37700 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.7e-40 171.0 116 71.6
QL03p071882 Quercus lobata HOM05D001391 ORTHO05D005432 3.9e-34 149.8 117 73.5
CSS0025210 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.7e-32 144.4 126 62.7
Hma1.2p1_1826F.1_g304410 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 3.7e-32 143.3 126 61.9
Hund25180 Selenicereus undatus HOM05D001391 ORTHO05D005432 2.4e-31 140.6 90 75.6
Gorai.008G177400 Gossypium raimondii HOM05D001391 ORTHO05D005432 7.7e-30 135.6 83 75.9
Hma1.2p1_3404F.1_g335810 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 1.7e-29 134.4 118 64.4
Mapoly0004s0019 Marchantia polymorpha HOM05D001391 ORTHO05D005432 3.0e-26 123.6 295 29.2
Gohir.A13G082366 Gossypium hirsutum HOM05D001391 ORTHO05D005432 7.5e-25 119.0 88 70.5
QL01p050908 Quercus lobata HOM05D001391 ORTHO05D005432 3.7e-24 116.7 142 47.9
SEGI_28419 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.4e-23 114.0 86 61.6
BcaB07g30295 Brassica carinata HOM05D001391 ORTHO05D005432 5.9e-22 109.4 79 78.5
Os03g0421400 Oryza sativa ssp. japonica HOM05D001391 ORTHO05D005432 4.7e-19 99.8 78 61.5
SEGI_10839 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.6e-17 94.0 82 50.0
QL01p050911 Quercus lobata HOM05D001391 ORTHO05D005432 2.8e-16 90.5 73 69.9
SEGI_38290 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.8e-16 90.5 55 69.1
MD16G1164500 Malus domestica HOM05D001391 ORTHO05D005432 9.5e-12 75.5 43 74.4


User provided reference genes

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