Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_18778_v3 Cicer arietinum L. HOM05D005187 ORTHO05D006321 2.0e-247 858.6 426 100.0
Medtr4g083590 Medicago truncatula HOM05D005187 ORTHO05D006321 1.0e-198 696.8 426 81.5
Glyma.07G223400 Glycine max HOM05D005187 ORTHO05D006321 2.0e-194 682.6 436 78.2
Glyma.20G022800 Glycine max HOM05D005187 ORTHO05D006321 3.5e-191 671.8 439 77.4
TPR.G34067 Trifolium pratense HOM05D005187 ORTHO05D006321 2.4e-184 649.0 402 80.8
Phvul.006G131800 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 3.2e-184 648.7 437 72.8
Lj4g0026916 Lotus japonicus HOM05D005187 ORTHO05D006321 7.9e-183 644.0 425 76.9
arahy.Tifrunner.gnm1.ann1.U4TTSR Arachis hypogaea HOM05D005187 ORTHO05D006321 1.3e-182 643.3 434 73.3
arahy.Tifrunner.gnm1.ann1.A8J5UB Arachis hypogaea HOM05D005187 ORTHO05D006321 5.1e-182 641.3 434 73.3
Glyma.09G020100 Glycine max HOM05D005187 ORTHO05D006321 1.5e-181 639.8 440 71.6
Glyma.15G126600 Glycine max HOM05D005187 ORTHO05D006321 2.8e-180 635.6 439 71.5
VMungo0540G1318 Vigna mungo HOM05D005187 ORTHO05D006321 6.2e-180 634.4 435 71.0
Lalb_Chr05g0219781 Lupinus albus HOM05D005187 ORTHO05D006321 1.8e-179 632.9 411 76.2
Lj6g0012614 Lotus japonicus HOM05D005187 ORTHO05D006321 3.4e-178 628.6 436 71.3
Psat1g169920 Pisum sativum HOM05D005187 ORTHO05D006321 3.4e-178 628.6 424 72.6
Medtr2g028900 Medicago truncatula HOM05D005187 ORTHO05D006321 4.3e-173 611.7 426 71.1
Lalb_Chr16g0385341 Lupinus albus HOM05D005187 ORTHO05D006321 1.3e-172 610.1 428 71.7
QL11p018233 Quercus lobata HOM05D005187 ORTHO05D006321 4.8e-172 608.2 437 69.6
Cfa000731 Carpinus fangiana HOM05D005187 ORTHO05D006321 1.4e-171 606.7 436 69.5
Potri.015G117500 Populus trichocarpa HOM05D005187 ORTHO05D006321 4.0e-171 605.1 436 69.3
VMungo0540G1732 Vigna mungo HOM05D005187 ORTHO05D006321 1.2e-170 603.6 414 71.5
Dinv11863 Davidia involucrata HOM05D005187 ORTHO05D006321 1.5e-170 603.2 436 67.9
FvH4_3g11981 Fragaria vesca HOM05D005187 ORTHO05D006321 3.4e-170 602.1 437 68.4
RcHm_v2.0_Chr5g0019591 Rosa chinensis HOM05D005187 ORTHO05D006321 3.4e-170 602.1 437 68.2
CiPaw.09G079400 Carya illinoinensis HOM05D005187 ORTHO05D006321 7.6e-170 600.9 434 69.4
Manes.16G047945 Manihot esculenta HOM05D005187 ORTHO05D006321 1.0e-169 600.5 436 69.5
Sed0009778 Sechium edule HOM05D005187 ORTHO05D006321 8.4e-169 597.4 435 67.1
CSS0000605 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.1e-168 597.0 429 68.8
FAN25G0172 Fragaria x ananassa HOM05D005187 ORTHO05D006321 1.9e-168 596.3 437 68.2
Potri.012G118800 Populus trichocarpa HOM05D005187 ORTHO05D006321 3.2e-168 595.5 436 68.8
Ciclev10015216m.g Citrus clementina HOM05D005187 ORTHO05D006321 4.2e-168 595.1 432 67.8
FAN21G3332 Fragaria x ananassa HOM05D005187 ORTHO05D006321 9.3e-168 594.0 437 68.0
CSS0021692 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.2e-167 593.6 429 67.6
Duzib160G0034 Durio zibethinus HOM05D005187 ORTHO05D006321 1.0e-166 590.5 440 69.1
Cc01_g03360 Coffea canephora HOM05D005187 ORTHO05D006321 1.8e-166 589.7 434 66.8
Gohir.D05G146700 Gossypium hirsutum HOM05D005187 ORTHO05D006321 2.3e-166 589.3 439 67.9
Sabra12G0089800 Salix brachista HOM05D005187 ORTHO05D006321 2.3e-166 589.3 437 68.0
Atru.chr10.600 Acer truncatum HOM05D005187 ORTHO05D006321 6.7e-166 587.8 372 76.9
Actinidia22378 Actinidia chinensis HOM05D005187 ORTHO05D006321 6.7e-166 587.8 423 69.5
MD10G1236200 Malus domestica HOM05D005187 ORTHO05D006321 6.7e-166 587.8 439 67.0
TWI63G0482 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 8.7e-166 587.4 435 66.7
Oeu052680.1 Olea europaea HOM05D005187 ORTHO05D006321 2.5e-165 585.9 423 66.9
Prupe.4G108200 Prunus persica HOM05D005187 ORTHO05D006321 2.5e-165 585.9 438 67.1
ClCG01G009120 Citrullus lanatus HOM05D005187 ORTHO05D006321 4.3e-165 585.1 432 67.1
TAR626G1727 Trochodendron aralioides HOM05D005187 ORTHO05D006321 7.4e-165 584.3 431 67.7
COL.COLO4_30954 Corchorus olitorius HOM05D005187 ORTHO05D006321 2.2e-164 582.8 436 67.2
Oeu060339.1 Olea europaea HOM05D005187 ORTHO05D006321 4.8e-164 581.6 428 65.7
Sed0019284 Sechium edule HOM05D005187 ORTHO05D006321 4.8e-164 581.6 432 66.9
Gorai.009G150500 Gossypium raimondii HOM05D005187 ORTHO05D006321 8.2e-164 580.9 439 67.0
MD05G1256000 Malus domestica HOM05D005187 ORTHO05D006321 8.2e-164 580.9 439 66.3
MSTRG.16334 Avicennia marina HOM05D005187 ORTHO05D006321 1.1e-163 580.5 432 65.0
Lj6g0019424 Lotus japonicus HOM05D005187 ORTHO05D006321 1.4e-163 580.1 436 67.0
TWI38G0211 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 1.4e-163 580.1 437 66.4
Eucgr.H03600 Eucalyptus grandis HOM05D005187 ORTHO05D006321 1.8e-163 579.7 434 66.6
PGSC0003DMG401021153 Solanum tuberosum HOM05D005187 ORTHO05D006321 2.4e-163 579.3 429 68.1
Sopen02g018400 Solanum pennellii HOM05D005187 ORTHO05D006321 4.1e-163 578.6 429 67.4
Ah.04g166250 Amaranthus hybridus HOM05D005187 ORTHO05D006321 6.9e-163 577.8 433 64.9
Duzib235G1525 Durio zibethinus HOM05D005187 ORTHO05D006321 1.2e-162 577.0 436 67.4
Thecc.06G138700 Theobroma cacao HOM05D005187 ORTHO05D006321 1.5e-162 576.6 436 67.2
CAN.G1202.10 Capsicum annuum HOM05D005187 ORTHO05D006321 2.0e-162 576.2 428 67.8
Nitab4.5_0007051g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 2.0e-162 576.2 429 67.1
Gohir.D06G145500 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.0e-161 573.9 429 68.5
Rhsim13G0129800 Rhododendron simsii HOM05D005187 ORTHO05D006321 2.2e-161 572.8 425 65.4
Gorai.010G169400 Gossypium raimondii HOM05D005187 ORTHO05D006321 2.9e-161 572.4 429 68.5
Sc26g0001200 Simmondsia chinensis HOM05D005187 ORTHO05D006321 5.0e-161 571.6 434 64.7
Solyc02g069240.1 Solanum lycopersicum HOM05D005187 ORTHO05D006321 5.0e-161 571.6 429 67.4
Peaxi162Scf00623g00041 Petunia axillaris HOM05D005187 ORTHO05D006321 8.5e-161 570.9 426 67.6
PGR083G0195 Punica granatum HOM05D005187 ORTHO05D006321 1.1e-160 570.5 424 66.5
Nitab4.5_0003027g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 2.5e-160 569.3 429 67.1
CSS0025112 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 2.7e-159 565.8 429 66.2
CsaV3_1G046490 Cucumis sativus L. HOM05D005187 ORTHO05D006321 4.6e-159 565.1 432 65.3
Gohir.A06G141720 Gossypium hirsutum HOM05D005187 ORTHO05D006321 7.9e-159 564.3 429 67.1
MSTRG.14817 Avicennia marina HOM05D005187 ORTHO05D006321 3.9e-158 562.0 431 64.7
SGA_v2.0_scaffold298G47667 Striga asiatica HOM05D005187 ORTHO05D006321 6.7e-158 561.2 433 63.3
MELO3C021805.2 Cucumis melo HOM05D005187 ORTHO05D006321 1.9e-157 559.7 414 66.2
Aqoxy3G04273 Aquilegia oxysepala HOM05D005187 ORTHO05D006321 3.7e-156 555.4 431 63.8
DCAR_003796 Daucus carota HOM05D005187 ORTHO05D006321 3.1e-155 552.4 438 62.1
CANSAT35G0012 Cannabis sativa HOM05D005187 ORTHO05D006321 1.5e-154 550.1 429 63.9
CANSAT35G0393 Cannabis sativa HOM05D005187 ORTHO05D006321 1.5e-154 550.1 429 63.9
unitig_32.g11673 Utricularia gibba HOM05D005187 ORTHO05D006321 5.9e-154 548.1 434 63.4
PSO541G0052 Papaver somniferum HOM05D005187 ORTHO05D006321 1.7e-153 546.6 447 63.1
HanXRQChr05g0161551 Helianthus annuus HOM05D005187 ORTHO05D006321 5.0e-153 545.0 421 62.2
Phvul.006G131600 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 5.0e-153 545.0 352 74.7
SHI14074 Sapria himalayana HOM05D005187 ORTHO05D006321 2.5e-152 542.7 424 63.4
Lsat_1_v5_gn_9_40501 Lactuca sativa HOM05D005187 ORTHO05D006321 4.7e-151 538.5 431 64.5
AT3G05320 Arabidopsis thaliana HOM05D005187 ORTHO05D006321 1.5e-149 533.5 429 64.1
Aa31LG9G15990 Aethionema arabicum HOM05D005187 ORTHO05D006321 5.7e-149 531.6 426 63.4
CARHR079660 Cardamine hirsuta HOM05D005187 ORTHO05D006321 1.3e-148 530.4 429 64.3
CSS0003379 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.7e-148 530.0 426 64.1
CSS0044498 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.7e-148 530.0 426 64.1
THA.LOC104812708 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 2.2e-148 529.6 444 60.8
AL3G15760 Arabidopsis lyrata HOM05D005187 ORTHO05D006321 3.7e-148 528.9 429 63.4
ATR0763G140 Amborella trichopoda HOM05D005187 ORTHO05D006321 6.3e-148 528.1 432 61.8
Sabra15G0135700 Salix brachista HOM05D005187 ORTHO05D006321 3.1e-147 525.8 392 69.1
HanXRQChr05g0161561 Helianthus annuus HOM05D005187 ORTHO05D006321 2.0e-146 523.1 368 67.1
Carub.0003s0459 Capsella rubella HOM05D005187 ORTHO05D006321 1.0e-145 520.8 431 62.6
THA.LOC104798549 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 1.3e-145 520.4 433 60.3
BcaC05g30138 Brassica carinata HOM05D005187 ORTHO05D006321 6.5e-145 518.1 427 63.5
Thhalv10020752m.g Eutrema salsugineum HOM05D005187 ORTHO05D006321 8.5e-145 517.7 427 63.0
HanXRQChr11g0320061 Helianthus annuus HOM05D005187 ORTHO05D006321 8.5e-145 517.7 422 63.5
BcaC05g30018 Brassica carinata HOM05D005187 ORTHO05D006321 1.4e-144 516.9 390 67.9
C05p61900 Brassica napus HOM05D005187 ORTHO05D006321 1.4e-144 516.9 390 67.9
BolC5t34850H Brassica oleracea HOM05D005187 ORTHO05D006321 5.5e-144 515.0 427 63.9
Sp3g04180 Schrenkiella parvula HOM05D005187 ORTHO05D006321 7.2e-144 514.6 429 62.7
BNapus_Darmor_BZH_scaffold_114p00200 Brassica napus HOM05D005187 ORTHO05D006321 9.4e-144 514.2 426 63.6
BraSC132t45512Z Brassica rapa HOM05D005187 ORTHO05D006321 1.6e-143 513.5 431 62.4
BolC1t05702H Brassica oleracea HOM05D005187 ORTHO05D006321 1.0e-142 510.8 429 62.2
BraA05t23022Z Brassica rapa HOM05D005187 ORTHO05D006321 2.3e-142 509.6 424 63.0
Gohir.A05G144300 Gossypium hirsutum HOM05D005187 ORTHO05D006321 5.2e-142 508.4 352 70.7
Lj1P1142T34 Lonicera japonica HOM05D005187 ORTHO05D006321 6.7e-142 508.1 344 71.8
HanXRQChr05g0152021 Helianthus annuus HOM05D005187 ORTHO05D006321 5.7e-141 505.0 425 62.4
Zm00001eb232980 Zea mays HOM05D005187 ORTHO05D006321 2.8e-140 502.7 426 58.0
SalBow7G0111 Salvia bowleyana HOM05D005187 ORTHO05D006321 1.4e-139 500.4 340 69.4
CDE02G3842 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 2.4e-139 499.6 420 59.5
Os02g0168500 Oryza sativa ssp. japonica HOM05D005187 ORTHO05D006321 2.0e-138 496.5 428 58.2
BcaB04g21454 Brassica carinata HOM05D005187 ORTHO05D006321 2.6e-138 496.1 361 68.1
Zm00001eb058010 Zea mays HOM05D005187 ORTHO05D006321 2.6e-138 496.1 426 57.5
Gorai.011G050000 Gossypium raimondii HOM05D005187 ORTHO05D006321 2.9e-137 492.7 429 61.3
Gohir.D10G046900 Gossypium hirsutum HOM05D005187 ORTHO05D006321 5.5e-136 488.4 429 60.8
HPP92_018360 Vanilla planifolia HOM05D005187 ORTHO05D006321 9.4e-136 487.6 409 59.4
Migut.H02421 Erythranthe guttata HOM05D005187 ORTHO05D006321 2.8e-132 476.1 431 60.1
Hma1.2p1_0868F.1_g230440 Hydrangea macrophylla HOM05D005187 ORTHO05D006321 2.8e-132 476.1 427 58.3
Nn7g38070 Nelumbo nucifera HOM05D005187 ORTHO05D006321 2.8e-124 449.5 325 67.4
MBI18_g43439_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 3.5e-122 442.6 353 62.6
CDE05G2899 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 1.0e-118 431.0 331 63.4
A05p42310 Brassica napus HOM05D005187 ORTHO05D006321 7.8e-114 414.8 342 64.3
Migut.K01171 Erythranthe guttata HOM05D005187 ORTHO05D006321 9.5e-112 407.9 427 52.9
Lsat_1_v5_gn_6_99661 Lactuca sativa HOM05D005187 ORTHO05D006321 1.1e-104 384.4 319 61.1
Lsat_1_v5_gn_8_151020 Lactuca sativa HOM05D005187 ORTHO05D006321 1.1e-104 384.4 319 61.1
MBI18_g45403_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 3.5e-98 362.8 377 52.8
SEGI_38166 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 2.3e-94 350.1 432 46.5
SMO348G0028 Selaginella moellendorffii HOM05D005187 ORTHO05D006321 2.9e-92 343.2 379 49.1
TPR.G17504 Trifolium pratense HOM05D005187 ORTHO05D006321 1.7e-89 334.0 227 69.6
TPR.G17495 Trifolium pratense HOM05D005187 ORTHO05D006321 9.6e-80 301.6 190 75.3
SEGI_21451 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 1.8e-65 254.2 370 42.7
Gorai.011G049800 Gossypium raimondii HOM05D005187 ORTHO05D006321 8.7e-65 251.9 242 55.0
GSVIVG01026258001 Vitis vinifera HOM05D005187 ORTHO05D006321 6.9e-62 242.3 140 80.7
SalBow3G3347 Salvia bowleyana HOM05D005187 ORTHO05D006321 8.7e-57 225.3 166 65.1
RcHm_v2.0_Chr5g0019601 Rosa chinensis HOM05D005187 ORTHO05D006321 1.6e-50 204.5 259 45.9
SalBow1G0530 Salvia bowleyana HOM05D005187 ORTHO05D006321 6.7e-41 172.6 107 74.8
BcaNung07272 Brassica carinata HOM05D005187 ORTHO05D006321 3.9e-33 146.7 145 57.2
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 3.9e-33 146.7 146 50.0
C05p61880 Brassica napus HOM05D005187 ORTHO05D000598 2.2e-31 141.0 110 68.2
BolC5t34848H Brassica oleracea HOM05D000769 ORTHO05D000598 3.1e-30 137.1 111 64.9
Zm00001eb040420 Zea mays HOM05D005187 ORTHO05D006321 1.3e-28 131.7 98 60.2
RcHm_v2.0_Chr5g0019611 Rosa chinensis HOM05D005187 ORTHO05D006321 2.2e-12 77.8 52 65.4
SEGI_07107 Sequoiadendron giganteum HOM05D000929 ORTHO05D016375 9.1e-06 55.8 56 48.2


User provided reference genes

Program Settings