Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 2.0e-286 988.4 503 100.0
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 2.0e-246 855.5 496 87.5
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 4.5e-246 854.4 493 86.4
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 7.7e-246 853.6 503 85.1
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 1.1e-244 849.7 499 86.4
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 1.6e-243 845.9 500 84.2
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 8.0e-243 843.6 492 85.4
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 2.3e-242 842.0 496 86.7
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.5e-238 828.2 503 83.1
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 3.5e-238 828.2 503 83.3
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.0e-237 826.6 503 82.9
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.5e-236 822.0 503 82.9
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 2.8e-232 808.5 490 83.9
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 7.0e-231 803.9 503 81.9
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 4.5e-230 801.2 500 80.4
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 6.6e-229 797.3 503 80.7
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 4.0e-226 788.1 489 80.4
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 5.4e-223 777.7 496 79.0
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 1.6e-222 776.2 499 77.8
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 3.5e-222 775.0 490 78.2
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 1.0e-221 773.5 504 76.6
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 8.6e-221 770.4 488 78.3
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 1.9e-220 769.2 488 78.7
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 3.6e-219 765.0 496 76.4
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 4.7e-219 764.6 489 77.9
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 8.0e-219 763.8 501 77.2
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 1.0e-218 763.5 492 77.4
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 1.8e-218 762.7 502 77.3
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 2.3e-218 762.3 490 78.4
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 6.8e-218 760.8 495 78.0
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.2e-217 760.0 490 78.0
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 1.5e-217 759.6 487 77.8
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 3.4e-217 758.4 483 78.7
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 4.4e-217 758.1 501 75.2
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 9.8e-217 756.9 490 77.8
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.7e-216 756.1 494 76.7
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 3.7e-216 755.0 506 76.7
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 1.1e-215 753.4 499 76.6
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 1.9e-215 752.7 494 76.5
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 1.2e-214 750.0 496 75.8
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 7.8e-214 747.3 496 75.6
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 1.3e-213 746.5 496 75.6
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 3.0e-213 745.3 496 75.0
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 8.6e-213 743.8 485 78.1
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 1.1e-212 743.4 496 74.6
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 1.1e-212 743.4 496 74.6
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 1.5e-212 743.0 496 76.0
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 2.5e-212 742.3 489 75.5
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 3.3e-212 741.9 493 75.5
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 3.3e-212 741.9 492 76.0
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 3.3e-212 741.9 486 76.1
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 4.3e-212 741.5 496 74.6
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 4.3e-212 741.5 489 75.1
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 7.3e-212 740.7 489 75.1
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 9.5e-212 740.3 495 75.6
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 2.8e-211 738.8 496 74.8
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 2.8e-211 738.8 494 75.3
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 2.8e-211 738.8 486 77.0
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 2.8e-211 738.8 513 73.9
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 3.6e-211 738.4 496 74.6
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 3.6e-211 738.4 502 76.3
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 6.2e-211 737.6 495 75.2
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 6.2e-211 737.6 482 76.1
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 8.1e-211 737.3 496 75.0
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 1.1e-210 736.9 482 76.3
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 1.4e-210 736.5 492 75.4
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 1.8e-210 736.1 489 76.5
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 1.8e-210 736.1 496 74.4
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 2.3e-210 735.7 496 75.2
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 3.1e-210 735.3 489 77.1
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 4.0e-210 734.9 492 75.0
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 6.8e-210 734.2 506 73.5
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 6.8e-210 734.2 491 75.2
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 1.2e-209 733.4 492 75.8
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 2.0e-209 732.6 496 75.0
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 3.4e-209 731.9 491 73.7
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 7.5e-209 730.7 486 76.3
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 1.3e-208 729.9 503 73.6
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 1.3e-208 729.9 495 74.5
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 1.1e-207 726.9 499 73.9
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.9e-207 726.1 490 75.7
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 1.9e-207 726.1 488 75.2
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 3.2e-207 725.3 510 72.4
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 2.7e-206 722.2 482 75.7
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 3.9e-205 718.4 497 74.0
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 3.9e-205 718.4 497 74.0
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 9.5e-204 713.8 520 70.6
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 1.2e-203 713.4 502 72.9
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 1.6e-203 713.0 478 75.1
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 1.8e-202 709.5 497 72.6
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 1.8e-202 709.5 497 72.6
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 3.4e-201 705.3 481 73.2
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 2.2e-200 702.6 495 71.1
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 4.1e-199 698.4 487 71.5
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 1.2e-198 696.8 504 71.2
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 6.0e-198 694.5 484 71.3
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 2.5e-196 689.1 525 69.1
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 4.3e-196 688.3 499 71.3
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 2.4e-194 682.6 524 68.5
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 3.1e-194 682.2 456 75.0
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 8.9e-194 680.6 492 69.3
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 2.0e-193 679.5 484 70.0
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 2.9e-192 675.6 498 68.7
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 3.8e-192 675.2 522 68.4
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 5.1e-189 664.8 488 70.5
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 2.5e-188 662.5 500 66.4
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 3.3e-188 662.1 469 73.6
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 5.6e-188 661.4 492 69.7
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 7.3e-188 661.0 569 62.4
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 8.1e-187 657.5 494 67.4
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 5.3e-186 654.8 485 67.6
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 4.5e-185 651.7 578 59.3
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 7.6e-185 651.0 472 68.6
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 2.9e-184 649.0 502 63.9
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 1.6e-182 643.3 496 68.3
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 2.1e-182 642.9 497 65.6
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 1.3e-181 640.2 490 67.3
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 3.0e-181 639.0 486 67.1
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 2.5e-180 636.0 499 63.1
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 4.3e-180 635.2 487 68.2
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 2.4e-178 629.4 497 67.2
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 2.4e-175 619.4 402 77.4
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 2.3e-173 612.8 492 62.8
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 2.3e-173 612.8 485 65.8
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 2.1e-166 589.7 503 63.2
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.1e-164 583.9 352 83.5
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 1.9e-159 566.6 502 59.0
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 7.2e-159 564.7 381 76.1
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.6e-158 563.5 403 74.2
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 1.0e-157 560.8 457 61.3
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 1.2e-153 547.4 493 58.4
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 5.0e-152 542.0 358 77.4
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 4.4e-148 528.9 545 54.9
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 7.4e-148 528.1 399 67.7
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 1.2e-145 520.8 392 69.1
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 2.1e-142 510.0 363 72.7
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 4.7e-142 508.8 365 71.8
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 8.5e-136 488.0 410 65.6
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.4e-132 475.7 280 84.3
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 1.8e-130 470.3 357 68.6
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.0e-125 454.5 272 83.1
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 2.2e-123 446.8 467 52.7
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 4.2e-119 432.6 304 72.4
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 9.5e-119 431.4 313 71.2
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 3.1e-114 416.4 275 76.7
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 1.3e-91 341.3 233 73.4
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 1.8e-85 320.9 479 39.9
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.4e-85 320.5 196 82.1
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 8.9e-85 318.5 252 70.6
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.1e-82 309.7 184 83.2
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 1.4e-77 294.7 217 71.4
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 2.4e-66 257.3 231 62.8
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 7.1e-66 255.8 201 65.7
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 4.0e-61 240.0 258 54.3
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 3.9e-56 223.4 138 78.3
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 1.5e-55 221.5 132 82.6
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 1.7e-51 208.0 153 71.9
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 3.2e-50 203.8 139 71.9
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 2.5e-47 194.1 263 49.4
ClCG01G009350 Citrullus lanatus HOM05D003643 ORTHO05D005001 1.3e-46 191.8 126 75.4
CSS0009011 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 3.7e-46 190.3 114 80.7
CSS0015856 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 3.0e-40 170.6 114 73.7
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 1.5e-39 168.3 133 64.7
Phvul.L001639 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 2.0e-39 167.9 102 79.4
Phvul.L008801 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 2.0e-39 167.9 102 79.4
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 8.5e-35 152.5 205 44.4
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 6.7e-24 116.3 92 67.4
Haze_13621 Corylus avellana HOM05D003643 ORTHO05D018815 1.1e-23 115.5 67 80.6
ClCG01G009330 Citrullus lanatus HOM05D003643 ORTHO05D018815 9.7e-23 112.5 63 85.7
Haze_13619 Corylus avellana HOM05D003643 ORTHO05D034905 1.7e-22 111.7 102 59.8
Gohir.A10G145401 Gossypium hirsutum HOM05D003643 ORTHO05D018815 4.8e-22 110.2 69 76.8
Psat0s3903g0040 Pisum sativum HOM05D003643 ORTHO05D005001 1.4e-21 108.6 65 89.2
Lsat_1_v5_gn_5_54460 Lactuca sativa HOM05D003643 ORTHO05D005001 1.6e-20 105.1 189 39.2
CSS0023685 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 4.5e-20 103.6 74 66.2
Cc11_g00920 Coffea canephora HOM05D003643 ORTHO05D005001 1.0e-19 102.4 67 74.6
CSS0030804 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.5e-18 98.6 65 73.8
CSS0024414 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.2e-17 95.5 65 70.8
CSS0049868 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 2.7e-17 94.4 65 70.8
CSS0012788 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 9.7e-15 85.9 77 59.7
CSS0032340 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 8.5e-11 72.8 46 67.4
HanXRQChr06g0180401 Helianthus annuus HOM05D003643 ORTHO05D005001 8.0e-09 66.2 37 75.7
RcHm_v2.0_Chr5g0019801 Rosa chinensis HOM05D003643 ORTHO05D005001 3.4e-07 60.8 48 72.9


User provided reference genes

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