Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_18758_v3 Cicer arietinum L. HOM05D005558 ORTHO05D006832 1.6e-100 369.4 177 100.0
Psat7g129880 Pisum sativum HOM05D005558 ORTHO05D006832 2.2e-91 339.0 177 91.5
TPR.G20977 Trifolium pratense HOM05D005558 ORTHO05D006832 9.4e-90 333.6 177 89.8
Lj4g0004166 Lotus japonicus HOM05D005558 ORTHO05D006832 8.0e-89 330.5 177 88.1
Medtr4g084120 Medicago truncatula HOM05D005558 ORTHO05D006832 3.4e-87 325.1 177 89.3
Glyma.07G221200 Glycine max HOM05D005558 ORTHO05D006832 3.7e-86 321.6 170 90.0
Phvul.002G097800 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 1.4e-85 319.7 171 88.3
arahy.Tifrunner.gnm1.ann1.09GV4T Arachis hypogaea HOM05D005558 ORTHO05D006832 1.6e-84 316.2 178 85.4
arahy.Tifrunner.gnm1.ann1.H4MLSW Arachis hypogaea HOM05D005558 ORTHO05D006832 1.6e-84 316.2 178 85.4
Lalb_Chr05g0219661 Lupinus albus HOM05D005558 ORTHO05D006832 2.2e-78 295.8 146 91.1
Nitab4.5_0003423g0040 Nicotiana tabacum HOM05D005558 ORTHO05D006832 1.6e-76 289.7 183 74.3
Prupe.5G000800 Prunus persica HOM05D005558 ORTHO05D006832 2.0e-76 289.3 162 83.3
Ah.08g212310 Amaranthus hybridus HOM05D005558 ORTHO05D006832 5.9e-76 287.7 159 81.1
Nn6g31548 Nelumbo nucifera HOM05D005558 ORTHO05D006832 1.0e-75 287.0 168 80.4
ClCG11G019260 Citrullus lanatus HOM05D005558 ORTHO05D006832 1.3e-75 286.6 152 83.6
Glyma.15G161100 Glycine max HOM05D005558 ORTHO05D006832 1.3e-75 286.6 180 76.1
arahy.Tifrunner.gnm1.ann1.8D2970 Arachis hypogaea HOM05D005558 ORTHO05D006832 1.7e-75 286.2 181 76.8
arahy.Tifrunner.gnm1.ann1.GVHP98 Arachis hypogaea HOM05D005558 ORTHO05D006832 1.7e-75 286.2 181 76.8
CANSAT25G0089 Cannabis sativa HOM05D005558 ORTHO05D006832 1.7e-75 286.2 157 81.5
THA.LOC104813721 Tarenaya hassleriana HOM05D005558 ORTHO05D006832 1.7e-75 286.2 170 78.2
Hma1.2p1_0914F.1_g236230 Hydrangea macrophylla HOM05D005558 ORTHO05D006832 2.3e-75 285.8 152 82.9
Sc17g0004140 Simmondsia chinensis HOM05D005558 ORTHO05D006832 2.3e-75 285.8 146 87.0
EL10Ac7g17248 Beta vulgaris HOM05D005558 ORTHO05D006832 2.9e-75 285.4 158 82.9
Cc10_g00070 Coffea canephora HOM05D005558 ORTHO05D006832 3.9e-75 285.0 146 86.3
Gohir.A05G177400 Gossypium hirsutum HOM05D005558 ORTHO05D006832 3.9e-75 285.0 179 78.8
RcHm_v2.0_Chr7g0217691 Rosa chinensis HOM05D005558 ORTHO05D006832 3.9e-75 285.0 173 78.6
Cfa014170 Carpinus fangiana HOM05D005558 ORTHO05D006832 5.0e-75 284.6 185 76.2
CiPaw.08G079200 Carya illinoinensis HOM05D005558 ORTHO05D006832 5.0e-75 284.6 182 75.8
COL.COLO4_12262 Corchorus olitorius HOM05D005558 ORTHO05D006832 5.0e-75 284.6 182 77.5
PGR083G0867 Punica granatum HOM05D005558 ORTHO05D006832 5.0e-75 284.6 174 80.5
Carub.0001s2052 Capsella rubella HOM05D005558 ORTHO05D006832 6.6e-75 284.3 150 85.3
Potri.002G001500 Populus trichocarpa HOM05D005558 ORTHO05D006832 6.6e-75 284.3 152 85.5
Hund05339 Selenicereus undatus HOM05D005558 ORTHO05D006832 6.6e-75 284.3 158 82.3
Gorai.009G185800 Gossypium raimondii HOM05D005558 ORTHO05D006832 8.6e-75 283.9 179 77.7
Gohir.D05G180800 Gossypium hirsutum HOM05D005558 ORTHO05D006832 1.5e-74 283.1 179 77.1
BcaB07g32099 Brassica carinata HOM05D005558 ORTHO05D006832 1.9e-74 282.7 157 80.9
CsaV3_4G037850 Cucumis sativus L. HOM05D005558 ORTHO05D006832 1.9e-74 282.7 152 82.2
Manes.18G000600 Manihot esculenta HOM05D005558 ORTHO05D006832 1.9e-74 282.7 170 77.1
Sopen12g031670 Solanum pennellii HOM05D005558 ORTHO05D006832 1.9e-74 282.7 180 72.8
BraA06t24816Z Brassica rapa HOM05D005558 ORTHO05D006832 2.5e-74 282.3 157 80.9
TWI12G1391 Tripterygium wilfordii HOM05D005558 ORTHO05D006832 4.3e-74 281.6 169 76.3
MSTRG.24533 Avicennia marina HOM05D005558 ORTHO05D006832 5.6e-74 281.2 145 86.2
A06p17130 Brassica napus HOM05D005558 ORTHO05D006832 7.3e-74 280.8 157 80.3
Solyc12g095770.2 Solanum lycopersicum HOM05D005558 ORTHO05D006832 7.3e-74 280.8 180 72.2
PSO170G6225 Papaver somniferum HOM05D005558 ORTHO05D006832 9.5e-74 280.4 185 73.5
Thecc.08G097300 Theobroma cacao HOM05D005558 ORTHO05D006832 9.5e-74 280.4 170 78.2
Aqoxy5G00965 Aquilegia oxysepala HOM05D005558 ORTHO05D006832 1.2e-73 280.0 143 85.3
BcaC05g26014 Brassica carinata HOM05D005558 ORTHO05D006832 1.2e-73 280.0 180 72.8
CSS0024776 Camellia sinensis var. sinensis HOM05D005558 ORTHO05D006832 1.2e-73 280.0 144 87.5
QL02p016334 Quercus lobata HOM05D005558 ORTHO05D006832 1.6e-73 279.6 189 70.9
AL1G34110 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 2.1e-73 279.3 180 73.9
Lsat_1_v5_gn_2_2740 Lactuca sativa HOM05D005558 ORTHO05D006832 2.1e-73 279.3 169 76.3
MD06G1057400 Malus domestica HOM05D005558 ORTHO05D006832 2.1e-73 279.3 149 85.2
CAN.G208.43 Capsicum annuum HOM05D005558 ORTHO05D006832 2.8e-73 278.9 180 73.3
Duzib116G0928 Durio zibethinus HOM05D005558 ORTHO05D006832 2.8e-73 278.9 182 74.7
Rhsim06G0000500 Rhododendron simsii HOM05D005558 ORTHO05D006832 2.8e-73 278.9 181 72.9
PGSC0003DMG400029397 Solanum tuberosum HOM05D005558 ORTHO05D006832 4.7e-73 278.1 144 84.7
GSVIVG01013466001 Vitis vinifera HOM05D005558 ORTHO05D006832 4.7e-73 278.1 149 83.9
CARHR021510 Cardamine hirsuta HOM05D005558 ORTHO05D006832 6.1e-73 277.7 150 83.3
MD07G1016000 Malus domestica HOM05D005558 ORTHO05D006832 1.4e-72 276.6 149 85.2
PSO017G1036 Papaver somniferum HOM05D005558 ORTHO05D006832 1.4e-72 276.6 185 73.0
FAN04G1408 Fragaria x ananassa HOM05D005558 ORTHO05D006832 2.3e-72 275.8 151 84.1
Peaxi162Scf00064g01430 Petunia axillaris HOM05D005558 ORTHO05D006832 2.3e-72 275.8 179 70.9
Lalb_Chr15g0083971 Lupinus albus HOM05D005558 ORTHO05D006832 3.1e-72 275.4 177 74.0
FvH4_5g26780 Fragaria vesca HOM05D005558 ORTHO05D006832 4.0e-72 275.0 173 77.5
FAN18G4437 Fragaria x ananassa HOM05D005558 ORTHO05D006832 4.0e-72 275.0 173 77.5
AT1G21065 Arabidopsis thaliana HOM05D005558 ORTHO05D006832 5.2e-72 274.6 150 82.7
Sp1g18730 Schrenkiella parvula HOM05D005558 ORTHO05D006832 6.8e-72 274.2 155 79.4
CiPaw.07G129900 Carya illinoinensis HOM05D005558 ORTHO05D006832 1.2e-71 273.5 188 72.3
BcaC07g39074 Brassica carinata HOM05D005558 ORTHO05D006832 1.5e-71 273.1 157 78.3
FAN08G1374 Fragaria x ananassa HOM05D005558 ORTHO05D006832 1.5e-71 273.1 157 81.5
HPP92_021698 Vanilla planifolia HOM05D005558 ORTHO05D006832 1.5e-71 273.1 143 83.2
BcaB03g12837 Brassica carinata HOM05D005558 ORTHO05D006832 2.0e-71 272.7 173 73.4
Migut.N03003 Erythranthe guttata HOM05D005558 ORTHO05D006832 2.0e-71 272.7 145 82.8
Thhalv10008709m.g Eutrema salsugineum HOM05D005558 ORTHO05D006832 2.6e-71 272.3 183 73.2
BolC8t49687H Brassica oleracea HOM05D005558 ORTHO05D006832 4.4e-71 271.6 157 77.7
A08p29100 Brassica napus HOM05D005558 ORTHO05D006832 5.8e-71 271.2 157 77.7
BraA08t34846Z Brassica rapa HOM05D005558 ORTHO05D006832 5.8e-71 271.2 157 77.7
Os02g0187500 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 3.7e-70 268.5 144 83.3
Eucgr.F01955 Eucalyptus grandis HOM05D005558 ORTHO05D006832 4.9e-70 268.1 179 73.7
SGA_v2.0_scaffold19G08925 Striga asiatica HOM05D005558 ORTHO05D006832 4.9e-70 268.1 152 80.3
ATR0605G185 Amborella trichopoda HOM05D005558 ORTHO05D006832 6.4e-70 267.7 147 79.6
Zm00001eb234660 Zea mays HOM05D005558 ORTHO05D006832 1.6e-68 263.1 144 78.5
Zm00001eb387340 Zea mays HOM05D005558 ORTHO05D006832 2.3e-67 259.2 150 75.3
HPP92_017798 Vanilla planifolia HOM05D005558 ORTHO05D006832 3.0e-67 258.8 148 77.0
Mapoly0002s0034 Marchantia polymorpha HOM05D005558 ORTHO05D006832 1.6e-65 253.1 142 77.5
SEGI_40156 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 1.6e-65 253.1 149 75.2
Pp3c1_31360 Physcomitrium patens HOM05D005558 ORTHO05D006832 1.4e-64 250.0 162 68.5
SMO259G0018 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 4.0e-64 248.4 142 73.2
ECA238G0376 Erigeron canadensis HOM05D005558 ORTHO05D006832 1.1e-61 240.4 126 85.7
Atru.chr13.17 Acer truncatum HOM05D005558 ORTHO05D006832 3.2e-61 238.8 160 75.0
Nitab4.5_0001309g0160 Nicotiana tabacum HOM05D005558 ORTHO05D006832 5.4e-61 238.0 127 83.5
TAR381G1539 Trochodendron aralioides HOM05D005558 ORTHO05D006832 9.2e-61 237.3 145 79.3
AUR62041000 Chenopodium quinoa HOM05D005558 ORTHO05D006832 3.5e-60 235.3 147 73.5
MELO3C017079.2 Cucumis melo HOM05D005558 ORTHO05D006832 3.5e-60 235.3 118 88.1
Sabra02G0001000 Salix brachista HOM05D005558 ORTHO05D006832 6.0e-60 234.6 134 81.3
HanXRQChr14g0427511 Helianthus annuus HOM05D005558 ORTHO05D006832 1.3e-59 233.4 140 77.1
VMungo0251G0776 Vigna mungo HOM05D005558 ORTHO05D006832 3.0e-59 232.3 126 88.9
Actinidia15539 Actinidia chinensis HOM05D005558 ORTHO05D006832 1.1e-58 230.3 122 84.4
Ciclev10002303m.g Citrus clementina HOM05D005558 ORTHO05D006832 1.5e-58 229.9 124 83.1
BolC5t30678H Brassica oleracea HOM05D000370 ORTHO05D006832 1.2e-57 226.9 140 76.4
Sed0017561 Sechium edule HOM05D005558 ORTHO05D006832 1.6e-57 226.5 159 68.6
C08p20580 Brassica napus HOM05D005558 ORTHO05D006832 4.7e-57 224.9 135 75.6
Cre17.g739300 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 5.8e-55 218.0 140 67.9
Lj4C814G4 Lonicera japonica HOM05D005558 ORTHO05D006832 5.8e-55 218.0 165 64.2
Phvul.009G240200 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 5.8e-55 218.0 143 75.5
Prupe.5G000700 Prunus persica HOM05D005558 ORTHO05D006832 5.8e-55 218.0 120 83.3
Dinv05517 Davidia involucrata HOM05D005558 ORTHO05D006832 2.4e-53 212.6 115 87.0
SGA_v2.0_scaffold25G11031 Striga asiatica HOM05D005558 ORTHO05D006832 1.6e-52 209.9 161 66.5
Os06g0638200 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 7.6e-47 191.0 99 83.8
SMO203G0115 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 3.9e-43 178.7 162 51.2
vmacro21735 Vaccinium macrocarpon HOM05D005558 ORTHO05D006832 4.3e-42 175.3 129 67.4
TAR376G0283 Trochodendron aralioides HOM05D005558 ORTHO05D006832 1.6e-41 173.3 94 85.1
Pp3c2_25680 Physcomitrium patens HOM05D005558 ORTHO05D006832 2.4e-40 169.5 148 50.7
SEGI_39286 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 2.4e-40 169.5 140 55.0
Peaxi162Scf00064g01422 Petunia axillaris HOM05D005558 ORTHO05D006832 5.3e-40 168.3 127 63.8
Haze_22894 Corylus avellana HOM05D005558 ORTHO05D006832 3.4e-39 165.6 185 50.3
Oeu000735.2 Olea europaea HOM05D005558 ORTHO05D006832 4.4e-39 165.2 89 83.1
Mapoly0065s0101 Marchantia polymorpha HOM05D005558 ORTHO05D006832 8.4e-38 161.0 140 52.9
Cre01.g043100 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 6.0e-36 154.8 140 52.1
Cfa023908 Carpinus fangiana HOM05D005558 ORTHO05D006832 5.6e-34 148.3 140 47.9
CDE04G3086 Ceratophyllum demersum HOM05D000433 ORTHO05D000443 2.4e-32 142.9 173 45.1
CBR_g570 Chara braunii HOM05D005558 ORTHO05D006832 3.1e-32 142.5 85 74.1
SalBow6G6347 Salvia bowleyana HOM05D005558 ORTHO05D006832 5.3e-32 141.7 146 52.1
AL8G17720 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 1.3e-27 127.1 72 83.3
MCO09G054 Micromonas commoda HOM05D005558 ORTHO05D006832 6.7e-27 124.8 133 47.4
C05p19780 Brassica napus HOM05D005558 ORTHO05D006832 1.9e-26 123.2 59 88.1
AL5G16180 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 2.8e-25 119.4 70 81.4
HPP92_021704 Vanilla planifolia HOM05D005558 ORTHO05D006832 2.0e-23 113.2 120 48.3
BcaC07g39073 Brassica carinata HOM05D005558 ORTHO05D006832 8.4e-22 107.8 53 86.8
Aa31LG7G5210 Aethionema arabicum HOM05D005558 ORTHO05D006832 1.3e-19 100.5 183 40.4
AagrBONN_evm.TU.Sc2ySwM_344.2923 Anthoceros agrestis HOM05D005558 ORTHO05D006832 6.9e-16 88.2 82 53.7
Cre09.g396850 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D034498 5.1e-11 72.0 141 32.6
DCAR_022964 Daucus carota HOM05D005558 ORTHO05D006832 2.5e-10 69.7 70 52.9
Cpa.g.sc36.93 Carica papaya HOM05D005558 ORTHO05D006832 9.7e-10 67.8 31 90.3
Cpa.g.sc36.94 Carica papaya HOM05D005558 ORTHO05D006832 6.3e-09 65.1 120 38.3
PRCOL_00001425 Prasinoderma coloniale HOM05D005558 ORTHO05D006832 1.5e-07 60.5 94 35.1
PRCOL_00001511 Prasinoderma coloniale HOM05D005558 ORTHO05D034498 3.4e-07 59.3 155 27.7
EL10Ac3g07438 Beta vulgaris HOM05D000371 ORTHO05D013217 2.2e-06 56.6 48 54.2


User provided reference genes

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