Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_18750_v3 Cicer arietinum L. HOM05D005008 ORTHO05D006092 2.1e-82 308.9 147 100.0
Psat7g129160 Pisum sativum HOM05D005008 ORTHO05D006092 3.8e-76 288.1 147 91.8
TPR.G38259 Trifolium pratense HOM05D005008 ORTHO05D006092 9.3e-75 283.5 145 93.1
TPR.G27448 Trifolium pratense HOM05D005008 ORTHO05D006092 7.9e-74 280.4 145 89.7
Medtr4g084320 Medicago truncatula HOM05D005008 ORTHO05D006092 1.6e-71 272.7 145 88.3
VMungo0251G1441 Vigna mungo HOM05D005008 ORTHO05D006092 6.5e-68 260.8 147 81.6
Phvul.002G096700 Phaseolus vulgaris HOM05D005008 ORTHO05D006092 1.9e-67 259.2 147 81.6
Lalb_Chr16g0385131 Lupinus albus HOM05D005008 ORTHO05D006092 7.9e-66 253.8 147 79.6
Glyma.20G018300 Glycine max HOM05D005008 ORTHO05D006092 1.1e-64 250.0 147 78.9
Lj2g0024950 Lotus japonicus HOM05D005008 ORTHO05D006092 3.1e-62 241.9 145 78.6
Lalb_Chr05g0219631 Lupinus albus HOM05D005008 ORTHO05D006092 2.0e-61 239.2 147 75.5
Cc01_g07910 Coffea canephora HOM05D005008 ORTHO05D006092 1.9e-59 232.6 146 71.9
CsaV3_1G043620 Cucumis sativus L. HOM05D005008 ORTHO05D006092 7.2e-59 230.7 144 73.6
CiPaw.13G126400 Carya illinoinensis HOM05D005008 ORTHO05D006092 1.2e-58 229.9 147 71.4
Manes.11G103800 Manihot esculenta HOM05D005008 ORTHO05D006092 1.2e-58 229.9 145 73.1
arahy.Tifrunner.gnm1.ann1.LRUS99 Arachis hypogaea HOM05D005008 ORTHO05D006092 1.6e-58 229.6 133 76.7
Prupe.6G148300 Prunus persica HOM05D005008 ORTHO05D006092 6.1e-58 227.6 141 73.8
MD11G1175100 Malus domestica HOM05D005008 ORTHO05D006092 1.0e-57 226.9 145 71.7
arahy.Tifrunner.gnm1.ann1.0IE2SQ Arachis hypogaea HOM05D005008 ORTHO05D006092 3.0e-57 225.3 133 75.9
MELO3C015091.2 Cucumis melo HOM05D005008 ORTHO05D006092 3.9e-57 224.9 144 70.8
ClCG03G012390 Citrullus lanatus HOM05D005008 ORTHO05D006092 1.1e-56 223.4 144 70.8
RcHm_v2.0_Chr5g0049161 Rosa chinensis HOM05D005008 ORTHO05D006092 4.3e-56 221.5 131 74.8
Sc21g0006720 Simmondsia chinensis HOM05D005008 ORTHO05D006092 4.3e-56 221.5 148 68.9
MD03G1160100 Malus domestica HOM05D005008 ORTHO05D006092 5.7e-56 221.1 148 66.9
Sabra09G0000700 Salix brachista HOM05D005008 ORTHO05D006092 1.7e-55 219.5 137 70.1
Solyc06g073900.3 Solanum lycopersicum HOM05D005008 ORTHO05D006092 2.8e-55 218.8 142 72.5
Sopen06g030300 Solanum pennellii HOM05D005008 ORTHO05D006092 2.8e-55 218.8 142 72.5
PGSC0003DMG400005906 Solanum tuberosum HOM05D005008 ORTHO05D006092 8.2e-55 217.2 142 71.8
Cfa010212 Carpinus fangiana HOM05D005008 ORTHO05D006092 1.4e-54 216.5 147 68.7
Peaxi162Scf00717g00217 Petunia axillaris HOM05D005008 ORTHO05D006092 1.4e-54 216.5 140 67.9
Potri.009G001100 Populus trichocarpa HOM05D005008 ORTHO05D006092 1.4e-54 216.5 137 69.3
PGSC0003DMG400002990 Solanum tuberosum HOM05D005008 ORTHO05D006092 1.4e-54 216.5 144 69.4
Dinv18863 Davidia involucrata HOM05D005008 ORTHO05D006092 2.4e-54 215.7 144 66.7
Solyc11g071790.2 Solanum lycopersicum HOM05D005008 ORTHO05D006092 4.1e-54 214.9 143 69.2
Hund18808 Selenicereus undatus HOM05D005008 ORTHO05D006092 6.9e-54 214.2 144 66.7
Sopen11g029460 Solanum pennellii HOM05D005008 ORTHO05D006092 6.9e-54 214.2 143 69.2
CAN.G1463.18 Capsicum annuum HOM05D005008 ORTHO05D006092 9.1e-54 213.8 142 70.4
Nitab4.5_0015902g0010 Nicotiana tabacum HOM05D005008 ORTHO05D006092 9.1e-54 213.8 142 70.4
Peaxi162Scf00098g00148 Petunia axillaris HOM05D005008 ORTHO05D006092 9.1e-54 213.8 149 65.8
Sed0018780 Sechium edule HOM05D005008 ORTHO05D006092 9.1e-54 213.8 143 67.8
RcHm_v2.0_Chr7g0230441 Rosa chinensis HOM05D005008 ORTHO05D006092 1.5e-53 213.0 150 66.0
Sc12g0000410 Simmondsia chinensis HOM05D005008 ORTHO05D006092 1.5e-53 213.0 146 65.8
CARHR008370 Cardamine hirsuta HOM05D005008 ORTHO05D006092 2.0e-53 212.6 133 70.7
Nitab4.5_0002426g0070 Nicotiana tabacum HOM05D005008 ORTHO05D006092 2.0e-53 212.6 140 68.6
Nitab4.5_0003644g0030 Nicotiana tabacum HOM05D005008 ORTHO05D006092 2.0e-53 212.6 150 66.0
Sp1g07130 Schrenkiella parvula HOM05D005008 ORTHO05D006092 4.5e-53 211.5 133 68.4
THA.LOC104815294 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 4.5e-53 211.5 143 67.8
arahy.Tifrunner.gnm1.ann1.L1LZAQ Arachis hypogaea HOM05D005008 ORTHO05D006092 1.0e-52 210.3 123 76.4
THA.LOC104808952 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 1.3e-52 209.9 141 68.1
Carub.0001s0784 Capsella rubella HOM05D005008 ORTHO05D006092 1.7e-52 209.5 140 67.1
Thhalv10019305m.g Eutrema salsugineum HOM05D005008 ORTHO05D006092 2.2e-52 209.1 133 67.7
PGR083G2197 Punica granatum HOM05D005008 ORTHO05D006092 2.2e-52 209.1 144 65.3
A06p05480 Brassica napus HOM05D005008 ORTHO05D006092 2.9e-52 208.8 135 69.6
BraA06t23756Z Brassica rapa HOM05D005008 ORTHO05D006092 3.8e-52 208.4 135 69.6
Nitab4.5_0005569g0020 Nicotiana tabacum HOM05D005008 ORTHO05D006092 3.8e-52 208.4 141 67.4
AT1G08480 Arabidopsis thaliana HOM05D005008 ORTHO05D006092 5.0e-52 208.0 139 67.6
EL10Ac7g16268 Beta vulgaris HOM05D005008 ORTHO05D006092 8.5e-52 207.2 135 66.7
Eucgr.J00592 Eucalyptus grandis HOM05D005008 ORTHO05D006092 8.5e-52 207.2 144 65.3
Dinv21730 Davidia involucrata HOM05D005008 ORTHO05D006092 1.4e-51 206.5 143 65.7
Ciclev10029485m.g Citrus clementina HOM05D005008 ORTHO05D006092 1.9e-51 206.1 141 65.2
Rhsim13G0198500 Rhododendron simsii HOM05D005008 ORTHO05D006092 2.5e-51 205.7 151 64.2
Gohir.A08G007400 Gossypium hirsutum HOM05D005008 ORTHO05D006092 7.2e-51 204.1 141 66.0
CSS0002518 Camellia sinensis var. sinensis HOM05D005008 ORTHO05D006092 9.4e-51 203.8 140 65.7
FAN04G2231 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.2e-50 203.4 129 70.5
FAN13G1722 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.6e-50 203.0 129 70.5
Gohir.D08G017500 Gossypium hirsutum HOM05D005008 ORTHO05D006092 1.6e-50 203.0 141 66.0
Gorai.004G011900 Gossypium raimondii HOM05D005008 ORTHO05D006092 1.6e-50 203.0 141 66.0
FAN08G1342 Fragaria x ananassa HOM05D005008 ORTHO05D006092 2.7e-50 202.2 129 70.5
BcaB07g34092 Brassica carinata HOM05D005008 ORTHO05D006092 4.7e-50 201.4 135 67.4
C05p06590 Brassica napus HOM05D005008 ORTHO05D006092 4.7e-50 201.4 135 67.4
BolC5t29419H Brassica oleracea HOM05D005008 ORTHO05D006092 4.7e-50 201.4 135 67.4
AUR62001577 Chenopodium quinoa HOM05D005008 ORTHO05D006092 4.7e-50 201.4 137 67.9
BcaB03g13330 Brassica carinata HOM05D005008 ORTHO05D006092 6.1e-50 201.1 136 64.0
FAN18G0191 Fragaria x ananassa HOM05D005008 ORTHO05D006092 7.9e-50 200.7 129 70.5
Hma1.2p1_0101F.1_g049710 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 1.4e-49 199.9 141 66.7
AL1G18910 Arabidopsis lyrata HOM05D005008 ORTHO05D006092 3.0e-49 198.7 156 60.3
A08p35120 Brassica napus HOM05D005008 ORTHO05D006092 3.0e-49 198.7 136 63.2
BraA08t35421Z Brassica rapa HOM05D005008 ORTHO05D006092 3.9e-49 198.4 136 63.2
Atru.chr3.3067 Acer truncatum HOM05D005008 ORTHO05D006092 6.7e-49 197.6 144 61.1
Aa31LG2G20300 Aethionema arabicum HOM05D005008 ORTHO05D006092 8.8e-49 197.2 130 68.5
Thecc.09G268300 Theobroma cacao HOM05D005008 ORTHO05D006092 8.8e-49 197.2 144 60.4
Aa31LG5G14080 Aethionema arabicum HOM05D005008 ORTHO05D006092 2.0e-48 196.1 132 64.4
Duzib170G0524 Durio zibethinus HOM05D005008 ORTHO05D006092 2.0e-48 196.1 144 59.7
arahy.Tifrunner.gnm1.ann1.67HGNM Arachis hypogaea HOM05D005008 ORTHO05D006092 2.6e-48 195.7 114 76.3
Lsat_1_v5_gn_6_104840 Lactuca sativa HOM05D005008 ORTHO05D006092 2.6e-48 195.7 141 61.0
Duzib168G2291 Durio zibethinus HOM05D005008 ORTHO05D006092 4.4e-48 194.9 144 59.7
BcaC07g38394 Brassica carinata HOM05D005008 ORTHO05D006092 5.7e-48 194.5 136 62.5
C08p11520 Brassica napus HOM05D005008 ORTHO05D006092 5.7e-48 194.5 136 62.5
BolC8t48832H Brassica oleracea HOM05D005008 ORTHO05D006092 5.7e-48 194.5 136 62.5
Lj2E351T1 Lonicera japonica HOM05D005008 ORTHO05D006092 1.3e-47 193.4 122 69.7
vmacro04058 Vaccinium macrocarpon HOM05D005008 ORTHO05D006092 2.4e-46 189.1 147 63.3
GSVIVG01028464001 Vitis vinifera HOM05D005008 ORTHO05D006092 9.1e-46 187.2 142 60.6
QL02p021765 Quercus lobata HOM05D005008 ORTHO05D006092 5.9e-45 184.5 211 47.9
unitig_899.g15386 Utricularia gibba HOM05D005008 ORTHO05D006092 5.9e-45 184.5 132 63.6
HanXRQChr05g0163331 Helianthus annuus HOM05D005008 ORTHO05D006092 7.7e-45 184.1 142 56.3
Aqoxy7G02777 Aquilegia oxysepala HOM05D005008 ORTHO05D006092 1.0e-44 183.7 133 63.2
TWI31G0222 Tripterygium wilfordii HOM05D005008 ORTHO05D006092 1.0e-44 183.7 127 65.4
unitig_746.g26601 Utricularia gibba HOM05D005008 ORTHO05D006092 1.3e-44 183.3 130 63.8
TAR628G1298 Trochodendron aralioides HOM05D005008 ORTHO05D006092 8.5e-44 180.6 146 58.2
MSTRG.18800 Avicennia marina HOM05D005008 ORTHO05D006092 1.9e-43 179.5 135 63.0
ECA246G4934 Erigeron canadensis HOM05D005008 ORTHO05D006092 1.9e-43 179.5 136 60.3
MSTRG.21002 Avicennia marina HOM05D005008 ORTHO05D006092 4.2e-43 178.3 138 62.3
ATR1136G073 Amborella trichopoda HOM05D005008 ORTHO05D006092 9.4e-43 177.2 133 59.4
Migut.D02371 Erythranthe guttata HOM05D005008 ORTHO05D006092 2.7e-42 175.6 128 61.7
Migut.D02374 Erythranthe guttata HOM05D005008 ORTHO05D006092 2.7e-42 175.6 128 61.7
COL.COLO4_25364 Corchorus olitorius HOM05D005008 ORTHO05D006092 6.1e-42 174.5 127 63.0
Oeu031444.1 Olea europaea HOM05D005008 ORTHO05D006092 6.1e-42 174.5 140 58.6
Ah.01g003330 Amaranthus hybridus HOM05D005008 ORTHO05D006092 7.4e-40 167.5 213 41.3
SGA_v2.0_scaffold114G31950 Striga asiatica HOM05D005008 ORTHO05D006092 3.1e-38 162.2 138 56.5
CDE05G0523 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 2.0e-37 159.5 149 49.7
MBI17_g21974_MAGBIO Magnolia biondii HOM05D005008 ORTHO05D006092 2.0e-37 159.5 150 51.3
CDE04G3167 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 1.3e-36 156.8 149 48.3
DCAR_021985 Daucus carota HOM05D005008 ORTHO05D006092 8.5e-36 154.1 135 56.3
MBI17_g21976_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 1.6e-34 149.8 145 51.7
SEGI_09212 Sequoiadendron giganteum HOM05D005008 ORTHO05D006092 2.7e-34 149.1 142 48.6
PSO325G0018 Papaver somniferum HOM05D005008 ORTHO05D006092 4.0e-33 145.2 134 53.7
Haze_23598 Corylus avellana HOM05D005008 ORTHO05D006092 1.3e-31 140.2 84 72.6
PSO144G0132 Papaver somniferum HOM05D005008 ORTHO05D006092 4.8e-31 138.3 132 52.3
FvH4_5g32770 Fragaria vesca HOM05D005008 ORTHO05D006092 2.0e-29 132.9 82 72.0
PSO017G3706 Papaver somniferum HOM05D005008 ORTHO05D006092 1.5e-27 126.7 119 51.3
PSO478G0762 Papaver somniferum HOM05D005008 ORTHO05D006092 1.5e-27 126.7 118 51.7
PSO017G4122 Papaver somniferum HOM05D005008 ORTHO05D006092 1.9e-27 126.3 119 51.3
AUR62020205 Chenopodium quinoa HOM05D005008 ORTHO05D006092 1.2e-26 123.6 85 67.1
TPR.G18466 Trifolium pratense HOM05D005008 ORTHO05D006092 1.2e-26 123.6 57 96.5
Nn1g08680 Nelumbo nucifera HOM05D005008 ORTHO05D006092 8.0e-26 120.9 81 67.9
Atru.chr5.2770 Acer truncatum HOM05D005008 ORTHO05D006092 2.3e-25 119.4 86 61.6
Zm00001eb173990 Zea mays HOM05D005008 ORTHO05D006092 6.8e-25 117.9 132 40.2
Os08g0112800 Oryza sativa ssp. japonica HOM05D005008 ORTHO05D006092 1.2e-24 117.1 131 40.5
Zm00001eb260600 Zea mays HOM05D005008 ORTHO05D006092 1.5e-24 116.7 132 39.4
Mapoly0024s0049 Marchantia polymorpha HOM05D005008 ORTHO05D006092 2.6e-24 115.9 143 41.3
Sed0017043 Sechium edule HOM05D005008 ORTHO05D006092 7.5e-24 114.4 82 59.8
HPP92_002034 Vanilla planifolia HOM05D005008 ORTHO05D006092 1.7e-23 113.2 131 41.2
PSO339G0217 Papaver somniferum HOM05D005008 ORTHO05D006092 2.8e-23 112.5 105 50.5
PSO541G3575 Papaver somniferum HOM05D005008 ORTHO05D006092 5.4e-22 108.2 95 53.7
Pp3c7_24330 Physcomitrium patens HOM05D005008 ORTHO05D006092 1.0e-20 104.0 136 39.0
Pp3c1_6020 Physcomitrium patens HOM05D005008 ORTHO05D006092 3.3e-19 99.0 134 38.1
BcaB07g32561 Brassica carinata HOM05D005008 ORTHO05D006092 2.1e-18 96.3 86 50.0
SalBow6G2115 Salvia bowleyana HOM05D005008 ORTHO05D006092 4.0e-17 92.0 179 30.7
SMO364G0346 Selaginella moellendorffii HOM05D005008 ORTHO05D006092 5.0e-12 75.1 104 36.5
PSO447G0120 Papaver somniferum HOM05D005008 ORTHO05D006092 4.3e-11 72.0 72 47.2
Hma1.2p1_1951F.1_g308770 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 2.3e-09 66.2 57 52.6
Hma1.2p1_1258F.1_g270900 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 8.9e-09 64.3 57 50.9
FvH4_3g26740 Fragaria vesca HOM05D005008 ORTHO05D006092 1.4e-06 57.0 38 63.2
Oeu026671.1 Olea europaea HOM05D005008 ORTHO05D006092 9.2e-06 54.3 41 58.5


User provided reference genes

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