Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_18695_v3 Cicer arietinum L. HOM05D006107 ORTHO05D007455 2.9e-304 1047.7 521 100.0
Medtr4g085890 Medicago truncatula HOM05D006107 ORTHO05D007455 2.2e-296 1021.5 521 96.2
Psat7g125400 Pisum sativum HOM05D006107 ORTHO05D007455 3.8e-296 1020.8 521 96.5
TPR.G12695 Trifolium pratense HOM05D006107 ORTHO05D007455 1.2e-294 1015.8 521 96.0
Glyma.07G213500 Glycine max HOM05D006107 ORTHO05D007455 1.4e-287 992.3 521 92.7
Glyma.02G131500 Glycine max HOM05D006107 ORTHO05D007455 7.9e-286 986.5 521 92.5
Phvul.003G291600 Phaseolus vulgaris HOM05D006107 ORTHO05D007455 2.3e-285 984.9 521 92.5
Lj4g0016203 Lotus japonicus HOM05D006107 ORTHO05D007455 1.5e-284 982.2 521 92.5
arahy.Tifrunner.gnm1.ann1.Q9TTL4 Arachis hypogaea HOM05D006107 ORTHO05D007455 7.4e-284 979.9 521 91.6
VMungo0251G2128 Vigna mungo HOM05D006107 ORTHO05D007455 9.7e-284 979.5 521 91.6
Lalb_Chr16g0384781 Lupinus albus HOM05D006107 ORTHO05D007455 1.3e-280 969.1 521 91.2
QL11p035424 Quercus lobata HOM05D006107 ORTHO05D007455 1.8e-277 958.7 520 89.4
TWI31G1484 Tripterygium wilfordii HOM05D006107 ORTHO05D007455 4.3e-276 954.1 521 89.3
arahy.Tifrunner.gnm1.ann1.H5D5IL Arachis hypogaea HOM05D006107 ORTHO05D007455 1.3e-275 952.6 547 86.3
Atru.chr5.2684 Acer truncatum HOM05D006107 ORTHO05D007455 5.3e-274 947.2 518 88.2
CsaV3_7G008530 Cucumis sativus L. HOM05D006107 ORTHO05D007455 6.9e-274 946.8 521 87.7
Prupe.8G126800 Prunus persica HOM05D006107 ORTHO05D007455 2.2e-272 941.8 521 88.7
Sed0010263 Sechium edule HOM05D006107 ORTHO05D007455 2.9e-272 941.4 521 87.7
CSS0002619 Camellia sinensis var. sinensis HOM05D006107 ORTHO05D007455 5.0e-272 940.6 521 87.7
Hma1.2p1_0474F.1_g160480 Hydrangea macrophylla HOM05D006107 ORTHO05D007455 6.5e-272 940.3 520 86.9
Rhsim05G0085900 Rhododendron simsii HOM05D006107 ORTHO05D007455 1.1e-271 939.5 521 87.5
CSS0005791 Camellia sinensis var. sinensis HOM05D006107 ORTHO05D007455 1.9e-271 938.7 521 87.5
RcHm_v2.0_Chr6g0257681 Rosa chinensis HOM05D006107 ORTHO05D007455 2.5e-271 938.3 518 88.0
Cfa004529 Carpinus fangiana HOM05D006107 ORTHO05D007455 7.2e-271 936.8 507 90.7
Ciclev10028103m.g Citrus clementina HOM05D006107 ORTHO05D007455 7.2e-271 936.8 521 86.9
Sabra09G0076700 Salix brachista HOM05D006107 ORTHO05D007455 9.4e-271 936.4 521 87.3
Potri.009G100800 Populus trichocarpa HOM05D006107 ORTHO05D007455 2.7e-270 934.9 521 86.9
Thecc.02G102000 Theobroma cacao HOM05D006107 ORTHO05D007455 3.6e-270 934.5 521 86.8
GSVIVG01031728001 Vitis vinifera HOM05D006107 ORTHO05D007455 4.7e-270 934.1 522 88.3
MD05G1082300 Malus domestica HOM05D006107 ORTHO05D007455 6.1e-270 933.7 521 87.5
Gohir.A12G023600 Gossypium hirsutum HOM05D006107 ORTHO05D007455 1.8e-269 932.2 521 86.4
Eucgr.G01434 Eucalyptus grandis HOM05D006107 ORTHO05D007455 8.8e-269 929.9 521 86.6
Duzib132G0557 Durio zibethinus HOM05D006107 ORTHO05D007455 1.1e-268 929.5 521 86.0
FAN20G2345 Fragaria x ananassa HOM05D006107 ORTHO05D007455 1.1e-268 929.5 521 87.5
FAN15G1599 Fragaria x ananassa HOM05D006107 ORTHO05D007455 1.5e-268 929.1 521 87.5
Gorai.008G024600 Gossypium raimondii HOM05D006107 ORTHO05D007455 1.5e-268 929.1 521 86.2
Gohir.D12G024200 Gossypium hirsutum HOM05D006107 ORTHO05D007455 2.6e-268 928.3 521 86.0
ClCG02G006000 Citrullus lanatus HOM05D006107 ORTHO05D007455 5.7e-268 927.2 556 82.2
FvH4_2g05870 Fragaria vesca HOM05D006107 ORTHO05D007455 2.2e-267 925.2 521 86.8
PGR042G0079 Punica granatum HOM05D006107 ORTHO05D007455 8.2e-267 923.3 522 85.6
FAN24G1318 Fragaria x ananassa HOM05D006107 ORTHO05D007455 3.1e-266 921.4 521 86.6
Cc02_g18880 Coffea canephora HOM05D006107 ORTHO05D007455 1.2e-265 919.5 521 85.4
Lj5A210T89 Lonicera japonica HOM05D006107 ORTHO05D007455 2.0e-265 918.7 521 85.6
MBI03_g13479_MAGBIO Magnolia biondii HOM05D006107 ORTHO05D007455 2.1e-262 908.7 521 83.3
Peaxi162Scf00016g01935 Petunia axillaris HOM05D006107 ORTHO05D007455 4.7e-262 907.5 521 84.8
Haze_10087 Corylus avellana HOM05D006107 ORTHO05D007455 6.1e-262 907.1 521 86.6
Migut.B00356 Erythranthe guttata HOM05D006107 ORTHO05D007455 6.1e-262 907.1 521 85.0
Hund06173 Selenicereus undatus HOM05D006107 ORTHO05D007455 1.8e-261 905.6 522 84.5
SGA_v2.0_scaffold90G27632 Striga asiatica HOM05D006107 ORTHO05D007455 3.0e-261 904.8 521 84.6
THA.LOC104807265 Tarenaya hassleriana HOM05D006107 ORTHO05D007455 3.9e-261 904.4 522 82.4
RcHm_v2.0_Chr6g0257701 Rosa chinensis HOM05D006107 ORTHO05D007455 1.1e-260 902.9 521 83.9
SalBow6G1673 Salvia bowleyana HOM05D006107 ORTHO05D007455 2.0e-260 902.1 523 84.1
Sc18g0004170 Simmondsia chinensis HOM05D006107 ORTHO05D007455 7.4e-260 900.2 521 83.7
vmacro19505 Vaccinium macrocarpon HOM05D006107 ORTHO05D007455 1.3e-259 899.4 624 74.0
CANSAT25G2960 Cannabis sativa HOM05D006107 ORTHO05D007455 6.3e-259 897.1 524 82.4
TAR376G0662 Trochodendron aralioides HOM05D006107 ORTHO05D007455 2.4e-258 895.2 521 83.5
AT4G34030 Arabidopsis thaliana HOM05D006107 ORTHO05D007455 3.1e-258 894.8 521 81.2
BcaB03g11861 Brassica carinata HOM05D006107 ORTHO05D007455 4.1e-258 894.4 521 81.6
BraA08t33679Z Brassica rapa HOM05D006107 ORTHO05D007455 1.2e-257 892.9 521 81.2
PGSC0003DMG400025888 Solanum tuberosum HOM05D006107 ORTHO05D007455 1.6e-257 892.5 521 82.5
AL7G17360 Arabidopsis lyrata HOM05D006107 ORTHO05D007455 2.6e-257 891.7 521 81.0
Sopen01g050230 Solanum pennellii HOM05D006107 ORTHO05D007455 2.6e-257 891.7 521 82.5
BcaC01g00937 Brassica carinata HOM05D006107 ORTHO05D007455 3.5e-257 891.3 521 81.0
Thhalv10024753m.g Eutrema salsugineum HOM05D006107 ORTHO05D007455 4.5e-257 891.0 521 80.6
Solyc01g108030.4 Solanum lycopersicum HOM05D006107 ORTHO05D007455 4.5e-257 891.0 521 82.5
DCAR_001629 Daucus carota HOM05D006107 ORTHO05D007455 5.9e-257 890.6 521 83.3
C03p86150 Brassica napus HOM05D006107 ORTHO05D007455 7.7e-257 890.2 521 80.8
Aa31LG2G16450 Aethionema arabicum HOM05D006107 ORTHO05D007455 1.0e-256 889.8 521 80.6
A08p17180 Brassica napus HOM05D006107 ORTHO05D007455 1.0e-256 889.8 521 80.6
Sp7g31760 Schrenkiella parvula HOM05D006107 ORTHO05D007455 1.3e-256 889.4 521 80.4
BolC3t20903H Brassica oleracea HOM05D006107 ORTHO05D007455 1.7e-256 889.0 521 80.8
Carub.0007s0637 Capsella rubella HOM05D006107 ORTHO05D007455 8.5e-256 886.7 521 79.7
EL10Ac1g02230 Beta vulgaris HOM05D006107 ORTHO05D007455 1.1e-255 886.3 521 82.3
PSO675G2583 Papaver somniferum HOM05D006107 ORTHO05D007455 1.9e-255 885.6 521 81.8
CAN.G1041.37 Capsicum annuum HOM05D006107 ORTHO05D007455 2.5e-255 885.2 521 82.3
PSO541G4551 Papaver somniferum HOM05D006107 ORTHO05D007455 1.6e-254 882.5 521 81.8
Nitab4.5_0018866g0010 Nicotiana tabacum HOM05D006107 ORTHO05D007455 2.3e-253 878.6 534 81.1
A03p62570 Brassica napus HOM05D006107 ORTHO05D007455 3.0e-253 878.2 521 79.8
HanXRQChr11g0331361 Helianthus annuus HOM05D006107 ORTHO05D007455 3.0e-253 878.2 521 80.6
ECA236G2832 Erigeron canadensis HOM05D006107 ORTHO05D007455 4.0e-253 877.9 520 81.0
COL.COLO4_32644 Corchorus olitorius HOM05D006107 ORTHO05D007455 6.7e-253 877.1 521 81.8
Aqoxy6G01306 Aquilegia oxysepala HOM05D006107 ORTHO05D007455 1.5e-252 875.9 521 81.0
C07p60130 Brassica napus HOM05D006107 ORTHO05D007455 2.0e-252 875.5 521 79.7
BolC7t46453H Brassica oleracea HOM05D006107 ORTHO05D007455 2.0e-252 875.5 521 79.7
Lsat_1_v5_gn_7_86820 Lactuca sativa HOM05D006107 ORTHO05D007455 2.6e-252 875.2 516 81.8
HPP92_004071 Vanilla planifolia HOM05D006107 ORTHO05D007455 4.4e-252 874.4 520 80.4
ATR1126G046 Amborella trichopoda HOM05D006107 ORTHO05D007455 6.3e-251 870.5 521 81.4
AUR62035403 Chenopodium quinoa HOM05D006107 ORTHO05D007455 7.0e-250 867.1 545 78.2
Zm00001eb179170 Zea mays HOM05D006107 ORTHO05D007455 1.6e-246 855.9 518 79.2
Dinv42164 Davidia involucrata HOM05D006107 ORTHO05D007455 8.8e-245 850.1 516 81.6
CDE10G1185 Ceratophyllum demersum HOM05D006107 ORTHO05D007455 1.3e-243 846.3 522 79.7
Nitab4.5_0001428g0130 Nicotiana tabacum HOM05D006107 ORTHO05D007455 1.1e-242 843.2 521 79.1
Oeu007292.2 Olea europaea HOM05D006107 ORTHO05D007455 3.8e-240 834.7 469 85.5
BcaNung03357 Brassica carinata HOM05D006107 ORTHO05D007455 5.5e-239 830.9 521 76.6
FAN27G3033 Fragaria x ananassa HOM05D006107 ORTHO05D007455 5.5e-239 830.9 521 79.8
Nn5g30280 Nelumbo nucifera HOM05D006107 ORTHO05D007455 1.8e-237 825.9 468 85.9
unitig_21.g20740 Utricularia gibba HOM05D006107 ORTHO05D007455 1.8e-237 825.9 520 78.7
Pp3c3_22750 Physcomitrium patens HOM05D006107 ORTHO05D007455 8.9e-237 823.5 521 76.2
CiPaw.05G007100 Carya illinoinensis HOM05D006107 ORTHO05D007455 3.7e-235 818.1 439 91.1
CARHR242170 Cardamine hirsuta HOM05D006107 ORTHO05D007455 1.1e-234 816.6 468 82.3
Mapoly0009s0150 Marchantia polymorpha HOM05D006107 ORTHO05D007455 3.5e-233 811.6 522 75.5
Manes.07G078100 Manihot esculenta HOM05D006107 ORTHO05D007455 4.7e-230 801.2 443 88.9
MELO3C018456.2 Cucumis melo HOM05D006107 ORTHO05D007455 3.1e-229 798.5 439 87.7
AagrBONN_evm.TU.Sc2ySwM_368.3420 Anthoceros agrestis HOM05D006107 ORTHO05D007455 5.8e-228 794.3 523 73.0
Cpa.g.sc62.2 Carica papaya HOM05D006107 ORTHO05D007455 9.2e-226 786.9 434 87.8
SEGI_09747 Sequoiadendron giganteum HOM05D006107 ORTHO05D007455 3.4e-220 768.5 466 80.5
HPP92_004116 Vanilla planifolia HOM05D006107 ORTHO05D007455 8.9e-213 743.8 520 71.0
SMO174G0062 Selaginella moellendorffii HOM05D006107 ORTHO05D007455 2.9e-203 712.2 521 67.6
Cre03.g181200 Chlamydomonas reinhardtii HOM05D006107 ORTHO05D007455 1.9e-194 682.9 525 63.0
AUR62041887 Chenopodium quinoa HOM05D006107 ORTHO05D007455 2.7e-193 679.1 464 73.5
Actinidia17868 Actinidia chinensis HOM05D006107 ORTHO05D007455 3.4e-180 635.6 397 79.3
Haze_26655 Corylus avellana HOM05D006107 ORTHO05D007455 3.7e-174 615.5 568 55.3
PRCOL_00006414 Prasinoderma coloniale HOM05D006107 ORTHO05D007455 8.4e-171 604.4 527 58.3
Haze_27116 Corylus avellana HOM05D006107 ORTHO05D007455 5.5e-154 548.5 437 62.0
Haze_27030 Corylus avellana HOM05D006107 ORTHO05D007455 2.0e-151 540.0 518 53.3
Ah.00g000150 Amaranthus hybridus HOM05D006107 ORTHO05D007455 3.9e-144 515.8 332 77.1
Hma1.2p1_0474F.1_g160470 Hydrangea macrophylla HOM05D006107 ORTHO05D007455 2.2e-118 430.3 233 87.1
Haze_26656 Corylus avellana HOM05D006107 ORTHO05D007455 3.1e-88 330.1 254 61.8
QL11p035444 Quercus lobata HOM05D006107 ORTHO05D007455 5.8e-79 299.3 158 88.6
CBR_g54985 Chara braunii HOM05D006107 ORTHO05D007455 1.9e-58 231.1 501 30.3
Medtr3g011860 Medicago truncatula HOM05D006107 ORTHO05D007455 7.4e-50 202.6 208 55.3
QL11p035447 Quercus lobata HOM05D006107 ORTHO05D007455 1.0e-35 155.6 90 86.7
Cfa025742 Carpinus fangiana HOM05D006107 ORTHO05D007455 4.2e-29 133.7 448 26.3
QL11p035449 Quercus lobata HOM05D006107 ORTHO05D007455 1.8e-24 118.2 66 83.3
CARHR242160 Cardamine hirsuta HOM05D006107 ORTHO05D007455 1.2e-15 89.0 55 74.5
SEGI_09117 Sequoiadendron giganteum HOM05D006107 ORTHO05D007455 1.1e-13 82.4 55 72.7
Solyc01g108060.2 Solanum lycopersicum HOM05D006107 ORTHO05D007455 1.2e-07 62.4 30 90.0
CDE05G3043 Ceratophyllum demersum HOM05D003397 ORTHO05D004390 3.5e-07 60.8 379 24.0
MCO15G166 Micromonas commoda HOM05D003397 ORTHO05D004390 7.7e-07 59.7 433 22.2
Cfa022865 Carpinus fangiana HOM05D003397 ORTHO05D004390 1.7e-06 58.5 303 24.4


User provided reference genes

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