Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_18624_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 1.6e-177 625.9 312 100.0
Medtr4g087590 Medicago truncatula HOM05D005513 ORTHO05D006848 8.4e-166 587.0 313 93.0
Psat7g119320 Pisum sativum HOM05D005513 ORTHO05D006848 3.5e-164 581.6 312 93.6
TPR.G23516 Trifolium pratense HOM05D005513 ORTHO05D006848 3.5e-164 581.6 312 92.9
Lj4g0013603 Lotus japonicus HOM05D005513 ORTHO05D006848 7.3e-162 573.9 316 90.5
Ca_18630_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 8.9e-160 567.0 283 100.0
Glyma.07G206300 Glycine max HOM05D005513 ORTHO05D006848 1.5e-159 566.2 315 88.6
Lalb_Chr16g0384361 Lupinus albus HOM05D005513 ORTHO05D006848 2.0e-159 565.8 316 88.9
Phvul.003G059600 Phaseolus vulgaris HOM05D005513 ORTHO05D006848 2.6e-159 565.5 312 89.4
VMungo0251G3259 Vigna mungo HOM05D005513 ORTHO05D006848 3.4e-159 565.1 312 89.7
Glyma.02G138700 Glycine max HOM05D005513 ORTHO05D006848 7.6e-159 563.9 316 88.3
arahy.Tifrunner.gnm1.ann1.GWB5D5 Arachis hypogaea HOM05D005513 ORTHO05D006848 6.6e-155 550.8 314 87.3
arahy.Tifrunner.gnm1.ann1.GC3WT6 Arachis hypogaea HOM05D005513 ORTHO05D006848 1.5e-154 549.7 314 86.9
TAR362G0948 Trochodendron aralioides HOM05D005513 ORTHO05D006848 4.2e-141 505.0 313 79.6
Nn7g37504 Nelumbo nucifera HOM05D005513 ORTHO05D006848 2.7e-140 502.3 314 79.3
Cfa015273 Carpinus fangiana HOM05D005513 ORTHO05D006848 7.9e-140 500.7 310 81.6
TWI38G0850 Tripterygium wilfordii HOM05D005513 ORTHO05D006848 1.0e-139 500.4 319 77.4
Atru.chr4.1482 Acer truncatum HOM05D005513 ORTHO05D006848 1.3e-139 500.0 306 80.7
Manes.05G132000 Manihot esculenta HOM05D005513 ORTHO05D006848 3.9e-139 498.4 300 80.7
Thecc.04G162400 Theobroma cacao HOM05D005513 ORTHO05D006848 3.9e-139 498.4 315 79.7
Ciclev10021262m.g Citrus clementina HOM05D005513 ORTHO05D006848 5.1e-139 498.0 314 77.7
CSS0036954 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 8.7e-139 497.3 300 81.0
Duzib151G0764 Durio zibethinus HOM05D005513 ORTHO05D006848 1.1e-138 496.9 310 78.7
Prupe.7G267200 Prunus persica HOM05D005513 ORTHO05D006848 4.3e-138 495.0 315 78.7
Cpa.g.sc343.3 Carica papaya HOM05D005513 ORTHO05D006848 7.4e-138 494.2 300 80.3
QL10p057731 Quercus lobata HOM05D005513 ORTHO05D006848 2.1e-137 492.7 314 79.3
Actinidia11441 Actinidia chinensis HOM05D005513 ORTHO05D006848 2.8e-137 492.3 327 77.4
CANSAT56G3287 Cannabis sativa HOM05D005513 ORTHO05D006848 2.8e-137 492.3 316 77.2
CiPaw.01G170000 Carya illinoinensis HOM05D005513 ORTHO05D006848 2.8e-137 492.3 314 78.7
RcHm_v2.0_Chr2g0085091 Rosa chinensis HOM05D005513 ORTHO05D006848 1.8e-136 489.6 315 77.8
Gohir.D10G121000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 3.1e-136 488.8 315 77.1
Gorai.011G132900 Gossypium raimondii HOM05D005513 ORTHO05D006848 3.1e-136 488.8 315 77.1
Sabra19G0110200 Salix brachista HOM05D005513 ORTHO05D006848 2.6e-135 485.7 300 78.3
FAN26G1480 Fragaria x ananassa HOM05D005513 ORTHO05D006848 4.5e-135 485.0 314 75.8
Gohir.A10G146000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 4.5e-135 485.0 315 76.5
Nitab4.5_0001936g0090 Nicotiana tabacum HOM05D005513 ORTHO05D006848 4.5e-135 485.0 317 75.4
FvH4_1g00490 Fragaria vesca HOM05D005513 ORTHO05D006848 7.6e-135 484.2 314 74.8
PSO675G7310 Papaver somniferum HOM05D005513 ORTHO05D006848 1.0e-134 483.8 316 75.6
Potri.019G099100 Populus trichocarpa HOM05D005513 ORTHO05D006848 1.0e-134 483.8 300 78.3
PGR042G2305 Punica granatum HOM05D005513 ORTHO05D006848 1.3e-134 483.4 312 76.6
GSVIVG01038190001 Vitis vinifera HOM05D005513 ORTHO05D006848 2.2e-134 482.6 316 77.5
FAN23G0174 Fragaria x ananassa HOM05D005513 ORTHO05D006848 2.9e-134 482.3 314 75.5
Atru.chr4.1511 Acer truncatum HOM05D005587 ORTHO05D007287 3.8e-134 481.9 297 80.5
Sed0010820 Sechium edule HOM05D005513 ORTHO05D006848 3.8e-134 481.9 300 77.0
CAN.G575.118 Capsicum annuum HOM05D005513 ORTHO05D006848 8.4e-134 480.7 317 75.7
AUR62002417 Chenopodium quinoa HOM05D005513 ORTHO05D006848 1.1e-133 480.3 306 75.5
CAN.G2177.12 Capsicum annuum HOM05D005513 ORTHO05D006848 2.5e-133 479.2 317 75.4
Cc09_g04220 Coffea canephora HOM05D005513 ORTHO05D006848 5.5e-133 478.0 300 76.7
EL10Ac3g06111 Beta vulgaris HOM05D005513 ORTHO05D006848 7.1e-133 477.6 316 74.1
Sed0015185 Sechium edule HOM05D005513 ORTHO05D006848 7.1e-133 477.6 300 76.7
Eucgr.L00024 Eucalyptus grandis HOM05D005513 ORTHO05D006848 9.3e-133 477.2 312 75.6
MSTRG.8188 Avicennia marina HOM05D005513 ORTHO05D006848 2.1e-132 476.1 319 74.0
CSS0028849 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 2.1e-132 476.1 282 83.3
Nitab4.5_0008882g0020 Nicotiana tabacum HOM05D005513 ORTHO05D006848 2.7e-132 475.7 317 73.8
CAN.G1579.15 Capsicum annuum HOM05D005513 ORTHO05D006848 4.6e-132 474.9 317 75.1
COL.COLO4_08197 Corchorus olitorius HOM05D005513 ORTHO05D006848 4.6e-132 474.9 310 76.5
Migut.F01838 Erythranthe guttata HOM05D005513 ORTHO05D006848 7.9e-132 474.2 319 73.4
AUR62023772 Chenopodium quinoa HOM05D005513 ORTHO05D006848 1.3e-131 473.4 306 74.8
Oeu057533.3 Olea europaea HOM05D005513 ORTHO05D006848 1.3e-131 473.4 349 68.2
FAN28G1408 Fragaria x ananassa HOM05D005513 ORTHO05D006848 2.3e-131 472.6 334 70.4
HanXRQChr10g0285921 Helianthus annuus HOM05D005513 ORTHO05D006848 5.1e-131 471.5 299 75.9
SalBow3G2273 Salvia bowleyana HOM05D005513 ORTHO05D006848 5.1e-131 471.5 319 73.0
QL10p057421 Quercus lobata HOM05D005513 ORTHO05D006848 6.7e-131 471.1 283 82.0
vmacro15699 Vaccinium macrocarpon HOM05D005513 ORTHO05D006848 1.1e-130 470.3 311 74.3
PSO541G5416 Papaver somniferum HOM05D005513 ORTHO05D006848 1.9e-130 469.5 316 74.1
Atru.BG.100.p Acer truncatum HOM05D005513 ORTHO05D006848 2.5e-130 469.2 283 81.3
Hund12358 Selenicereus undatus HOM05D005513 ORTHO05D006848 5.7e-130 468.0 313 72.5
Aqoxy2G04162 Aquilegia oxysepala HOM05D005513 ORTHO05D006848 7.4e-130 467.6 303 74.3
Peaxi162Scf00544g00118 Petunia axillaris HOM05D005513 ORTHO05D006848 2.1e-129 466.1 302 76.2
Sopen12g019010 Solanum pennellii HOM05D005513 ORTHO05D006848 2.8e-129 465.7 318 72.3
PGSC0003DMG400004444 Solanum tuberosum HOM05D005513 ORTHO05D006848 1.4e-128 463.4 315 72.7
ATR0743G005 Amborella trichopoda HOM05D005513 ORTHO05D006848 1.8e-128 463.0 300 73.0
Lsat_1_v5_gn_2_40261 Lactuca sativa HOM05D005513 ORTHO05D006848 1.2e-127 460.3 323 71.2
CAN.G575.103 Capsicum annuum HOM05D005513 ORTHO05D006848 4.5e-127 458.4 316 73.1
RhsimUnG0015400 Rhododendron simsii HOM05D005513 ORTHO05D006848 4.5e-127 458.4 334 70.1
Peaxi162Scf00544g00117 Petunia axillaris HOM05D005513 ORTHO05D006848 6.5e-126 454.5 314 71.7
CsaV3_6G032350 Cucumis sativus L. HOM05D005513 ORTHO05D006848 1.1e-125 453.8 300 75.0
Aa31LG3G16700 Aethionema arabicum HOM05D005513 ORTHO05D006848 1.4e-125 453.4 299 72.9
Eucgr.G01603 Eucalyptus grandis HOM05D005513 ORTHO05D006848 2.5e-125 452.6 312 73.1
Os08g0542600 Oryza sativa ssp. japonica HOM05D005513 ORTHO05D006848 5.5e-125 451.4 300 71.0
THA.LOC104801693 Tarenaya hassleriana HOM05D005513 ORTHO05D006848 7.9e-124 447.6 307 71.0
Rhsim02G0085900 Rhododendron simsii HOM05D005513 ORTHO05D006848 2.3e-123 446.0 352 66.5
MD15G1148400 Malus domestica HOM05D005513 ORTHO05D006848 1.1e-122 443.7 282 76.6
HPP92_011686 Vanilla planifolia HOM05D005513 ORTHO05D006848 1.1e-122 443.7 300 70.3
HPP92_011691 Vanilla planifolia HOM05D005513 ORTHO05D006848 2.5e-122 442.6 300 70.3
CAN.G2107.3 Capsicum annuum HOM05D005513 ORTHO05D006848 5.7e-122 441.4 298 75.2
Zm00001eb037350 Zea mays HOM05D005513 ORTHO05D006848 1.6e-121 439.9 303 68.6
BraA02t05034Z Brassica rapa HOM05D005513 ORTHO05D006848 2.8e-121 439.1 300 71.0
Thhalv10014198m.g Eutrema salsugineum HOM05D005513 ORTHO05D006848 3.7e-121 438.7 299 71.6
A02p00500 Brassica napus HOM05D005513 ORTHO05D006848 8.2e-121 437.6 300 71.3
ECA238G0802 Erigeron canadensis HOM05D005513 ORTHO05D006848 1.8e-120 436.4 288 74.3
BcaB05g21485 Brassica carinata HOM05D005513 ORTHO05D006848 3.1e-120 435.6 300 70.7
C02p04480 Brassica napus HOM05D005513 ORTHO05D006848 3.1e-120 435.6 300 70.7
AL6G20970 Arabidopsis lyrata HOM05D005513 ORTHO05D006848 1.5e-119 433.3 299 69.9
Lj6A199G41 Lonicera japonica HOM05D005513 ORTHO05D006848 2.6e-119 432.6 286 75.9
BolC2t06408H Brassica oleracea HOM05D005513 ORTHO05D006848 4.5e-119 431.8 300 70.0
Sp6g32980 Schrenkiella parvula HOM05D005513 ORTHO05D006848 7.7e-119 431.0 299 69.6
Carub.0006s0894 Capsella rubella HOM05D005513 ORTHO05D006848 1.1e-117 427.2 308 68.2
AT5G10460 Arabidopsis thaliana HOM05D005513 ORTHO05D006848 2.5e-117 426.0 299 68.9
CARHR202830 Cardamine hirsuta HOM05D005513 ORTHO05D006848 5.5e-117 424.9 300 68.7
SEGI_26385 Sequoiadendron giganteum HOM05D005513 ORTHO05D006848 5.5e-117 424.9 301 64.8
MELO3C011447.2 Cucumis melo HOM05D005513 ORTHO05D006848 2.1e-116 422.9 345 63.2
BcaC03g13313 Brassica carinata HOM05D005513 ORTHO05D006848 4.4e-114 415.2 300 68.3
Dinv33223 Davidia involucrata HOM05D005513 ORTHO05D006848 2.6e-111 406.0 250 80.8
Sc19g0006410 Simmondsia chinensis HOM05D005513 ORTHO05D006848 2.9e-110 402.5 250 79.2
ClCG08G010170 Citrullus lanatus HOM05D005513 ORTHO05D006848 1.1e-109 400.6 300 67.7
SGA_v2.0_scaffold122G33215 Striga asiatica HOM05D005513 ORTHO05D006848 6.7e-107 391.3 325 63.1
CAN.G2075.11 Capsicum annuum HOM05D005513 ORTHO05D006848 9.7e-106 387.5 316 63.6
Solyc12g038820.1 Solanum lycopersicum HOM05D005513 ORTHO05D006848 2.2e-105 386.3 251 76.1
CAN.G575.78 Capsicum annuum HOM05D005513 ORTHO05D006848 6.3e-105 384.8 250 76.0
Nitab4.5_0002604g0050 Nicotiana tabacum HOM05D005513 ORTHO05D006848 2.4e-104 382.9 296 66.2
SMO119G0305 Selaginella moellendorffii HOM05D005513 ORTHO05D006848 3.2e-101 372.5 302 58.6
Nitab4.5_0000241g0250 Nicotiana tabacum HOM05D005513 ORTHO05D006848 9.7e-98 360.9 259 69.9
Medtr4g087600 Medicago truncatula HOM05D005513 ORTHO05D006848 5.5e-93 345.1 208 83.7
Haze_01354 Corylus avellana HOM05D005513 ORTHO05D006848 4.7e-92 342.0 315 61.0
DCAR_005450 Daucus carota HOM05D005513 ORTHO05D006848 2.5e-85 319.7 227 69.2
CAN.G2075.13 Capsicum annuum HOM05D005513 ORTHO05D006848 1.0e-83 314.3 235 69.8
Lj6A58T47 Lonicera japonica HOM05D005513 ORTHO05D006848 5.9e-79 298.5 222 69.4
MCO04G248 Micromonas commoda HOM05D005513 ORTHO05D006848 5.6e-77 292.0 335 48.1
AUR62021707 Chenopodium quinoa HOM05D005513 ORTHO05D006848 2.0e-74 283.5 186 74.2
CAN.G181.20 Capsicum annuum HOM05D005513 ORTHO05D006848 4.9e-73 278.9 190 73.7
PRCOL_00005454 Prasinoderma coloniale HOM05D005513 ORTHO05D006848 1.2e-60 237.7 303 44.6
CAN.G1565.3 Capsicum annuum HOM05D005513 ORTHO05D006848 2.9e-57 226.5 317 43.2
Lj6A193T36 Lonicera japonica HOM05D005513 ORTHO05D006848 4.6e-55 219.2 174 70.1
Cre14.g609300 Chlamydomonas reinhardtii HOM05D005513 ORTHO05D006848 2.8e-52 209.9 318 39.6
SHI25989 Sapria himalayana HOM05D000105 ORTHO05D000023 1.2e-50 204.5 170 61.8
Gorai.004G148900 Gossypium raimondii HOM05D005513 ORTHO05D006848 2.0e-50 203.8 165 64.8
CAN.G1703.16 Capsicum annuum HOM05D005513 ORTHO05D006848 9.9e-50 201.4 142 72.5
Lj6A58T48 Lonicera japonica HOM05D005513 ORTHO05D006848 4.2e-40 169.5 115 74.8
Cc00_g04390 Coffea canephora HOM05D005513 ORTHO05D006848 5.4e-40 169.1 109 72.5
Lj6A203T27 Lonicera japonica HOM05D005513 ORTHO05D006848 1.1e-35 154.8 100 77.0
CAN.G1703.15 Capsicum annuum HOM05D005513 ORTHO05D006848 9.3e-32 141.7 91 76.9
Lj6A203G20 Lonicera japonica HOM05D005513 ORTHO05D006848 3.1e-27 126.7 175 45.7
CAN.G12630.1 Capsicum annuum HOM05D005513 ORTHO05D006848 9.0e-27 125.2 79 77.2
RcHm_v2.0_Chr2g0085051 Rosa chinensis HOM05D005513 ORTHO05D343180 1.4e-24 117.9 85 70.6
Lj6C203G2 Lonicera japonica HOM05D005513 ORTHO05D006848 1.9e-21 107.5 77 71.4
EL10Ac7g16782 Beta vulgaris HOM05D005513 ORTHO05D006848 7.4e-21 105.5 65 78.5
Lj6A192T18 Lonicera japonica HOM05D005513 ORTHO05D006848 1.6e-12 77.8 55 72.7
SHI25988 Sapria himalayana HOM05D000105 ORTHO05D000023 3.7e-12 76.6 81 49.4
Lj6A230T44 Lonicera japonica HOM05D005513 ORTHO05D006848 2.6e-10 70.5 53 66.0
SHI25987 Sapria himalayana HOM05D005513 ORTHO05D006848 3.8e-09 66.6 40 72.5


User provided reference genes

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