Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_18602_v3 Cicer arietinum L. HOM05D002505 ORTHO05D006559 5.4e-247 857.4 505 100.0
Lj6g0017559 Lotus japonicus HOM05D002505 ORTHO05D006559 3.7e-139 499.2 529 61.2
Psat4g091000 Pisum sativum HOM05D002505 ORTHO05D006559 4.5e-137 492.3 487 68.6
Glyma.09G030100 Glycine max HOM05D002505 ORTHO05D006559 5.9e-137 491.9 513 62.8
arahy.Tifrunner.gnm1.ann1.C6HHUS Arachis hypogaea HOM05D002505 ORTHO05D006559 8.3e-131 471.5 533 58.2
arahy.Tifrunner.gnm1.ann1.GJQ7VP Arachis hypogaea HOM05D002505 ORTHO05D006559 4.1e-130 469.2 528 58.1
arahy.Tifrunner.gnm1.ann1.91B0ED Arachis hypogaea HOM05D002505 ORTHO05D006559 1.6e-129 467.2 525 58.1
Phvul.006G073200 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 1.6e-129 467.2 529 60.1
VMungo0540G1128 Vigna mungo HOM05D002505 ORTHO05D006559 2.9e-128 463.0 577 57.2
Phvul.006G122700 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 4.7e-126 455.7 562 56.9
Medtr8g078230 Medicago truncatula HOM05D002505 ORTHO05D006559 2.1e-118 430.3 525 60.2
Lalb_Chr20g0120281 Lupinus albus HOM05D002505 ORTHO05D006559 1.7e-115 420.6 495 57.4
VMungo1309G1878 Vigna mungo HOM05D002505 ORTHO05D006559 1.6e-110 404.1 524 55.7
CiPaw.15G113000 Carya illinoinensis HOM05D002505 ORTHO05D006559 4.6e-97 359.4 517 50.5
TAR626G1844 Trochodendron aralioides HOM05D002505 ORTHO05D006559 1.3e-96 357.8 516 49.2
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 6.9e-93 345.5 523 43.4
ClCG07G010710 Citrullus lanatus HOM05D002505 ORTHO05D006559 4.4e-92 342.8 512 50.6
Sc18g0006950 Simmondsia chinensis HOM05D002505 ORTHO05D006559 1.2e-89 334.7 516 47.9
MELO3C016182.2 Cucumis melo HOM05D002505 ORTHO05D006559 2.5e-87 327.0 524 48.3
Sed0021026 Sechium edule HOM05D002505 ORTHO05D006559 4.3e-87 326.2 515 50.7
Prupe.4G127000 Prunus persica HOM05D002505 ORTHO05D006559 7.3e-87 325.5 511 52.6
Eucgr.D02598 Eucalyptus grandis HOM05D002505 ORTHO05D006559 9.6e-87 325.1 518 51.9
Thecc.09G195000 Theobroma cacao HOM05D002505 ORTHO05D006559 8.1e-86 322.0 325 60.0
CSS0039073 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 1.4e-85 321.2 426 49.1
MSTRG.14571 Avicennia marina HOM05D002505 ORTHO05D006559 4.0e-85 319.7 430 48.8
RcHm_v2.0_Chr5g0023231 Rosa chinensis HOM05D002505 ORTHO05D006559 9.0e-85 318.5 504 50.0
Duzib168G0650 Durio zibethinus HOM05D002505 ORTHO05D006559 2.6e-84 317.0 516 47.7
Nn4g25029 Nelumbo nucifera HOM05D002505 ORTHO05D006559 2.6e-84 317.0 519 48.0
FAN25G1470 Fragaria x ananassa HOM05D002505 ORTHO05D006559 5.8e-84 315.8 517 50.9
TWI59G0446 Tripterygium wilfordii HOM05D002505 ORTHO05D006559 5.8e-84 315.8 520 45.4
PGSC0003DMG400022499 Solanum tuberosum HOM05D002505 ORTHO05D006559 1.3e-83 314.7 511 53.0
Solyc01g098030.4 Solanum lycopersicum HOM05D002505 ORTHO05D006559 2.2e-83 313.9 330 59.7
FvH4_3g14000 Fragaria vesca HOM05D002505 ORTHO05D006559 2.9e-83 313.5 520 47.3
Peaxi162Scf00225g00129 Petunia axillaris HOM05D002505 ORTHO05D006559 2.9e-83 313.5 346 60.7
Rhsim09G0088500 Rhododendron simsii HOM05D002505 ORTHO05D006559 2.9e-83 313.5 522 43.9
FAN16G0440 Fragaria x ananassa HOM05D002505 ORTHO05D006559 4.9e-83 312.8 534 47.6
Potri.015G137000 Populus trichocarpa HOM05D002505 ORTHO05D006559 6.4e-83 312.4 525 46.5
CsaV3_4G007590 Cucumis sativus L. HOM05D002505 ORTHO05D006559 1.9e-82 310.8 522 47.5
FAN11G2806 Fragaria x ananassa HOM05D002505 ORTHO05D006559 2.4e-82 310.5 522 44.4
Sopen01g041610 Solanum pennellii HOM05D002505 ORTHO05D006559 4.2e-82 309.7 347 52.7
MD10G1217100 Malus domestica HOM05D002505 ORTHO05D006559 7.1e-82 308.9 534 47.8
CSS0016681 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 1.2e-81 308.1 445 44.0
Nitab4.5_0002840g0110 Nicotiana tabacum HOM05D002505 ORTHO05D006559 1.2e-81 308.1 336 61.6
Atru.chr1.1039 Acer truncatum HOM05D002505 ORTHO05D006559 2.1e-81 307.4 520 46.5
CANSAT21G0880 Cannabis sativa HOM05D002505 ORTHO05D006559 2.7e-81 307.0 516 47.3
Cc05_g16590 Coffea canephora HOM05D002505 ORTHO05D006559 2.7e-81 307.0 325 57.5
Gorai.013G241700 Gossypium raimondii HOM05D002505 ORTHO05D006559 2.7e-81 307.0 520 45.2
Cpa.g.sc77.87 Carica papaya HOM05D002505 ORTHO05D006559 2.3e-80 303.9 521 45.1
FAN21G2970 Fragaria x ananassa HOM05D002505 ORTHO05D006559 3.0e-80 303.5 532 44.7
MD05G1239100 Malus domestica HOM05D002505 ORTHO05D006559 3.9e-80 303.1 525 47.8
Oeu019749.1 Olea europaea HOM05D002505 ORTHO05D006559 6.7e-80 302.4 352 50.0
Gohir.D13G211600 Gossypium hirsutum HOM05D002505 ORTHO05D006559 8.7e-80 302.0 523 44.9
GSVIVG01031552001 Vitis vinifera HOM05D002505 ORTHO05D006559 1.5e-79 301.2 208 71.2
PGR102G1955 Punica granatum HOM05D002505 ORTHO05D006559 1.9e-79 300.8 541 43.6
vmacro00789 Vaccinium macrocarpon HOM05D002505 ORTHO05D006559 1.9e-79 300.8 548 42.3
Actinidia12750 Actinidia chinensis HOM05D002505 ORTHO05D006559 2.5e-79 300.4 439 46.9
Nitab4.5_0002361g0170 Nicotiana tabacum HOM05D002505 ORTHO05D006559 3.3e-79 300.1 336 61.0
Atru.chr3.1220 Acer truncatum HOM05D002505 ORTHO05D006559 1.6e-78 297.7 519 45.3
Migut.H01653 Erythranthe guttata HOM05D002505 ORTHO05D006559 1.6e-78 297.7 348 55.5
Manes.08G161700 Manihot esculenta HOM05D002505 ORTHO05D006559 2.1e-78 297.4 494 49.8
Gohir.A13G207000 Gossypium hirsutum HOM05D002505 ORTHO05D006559 2.8e-78 297.0 526 43.7
SGA_v2.0_scaffold49G18207 Striga asiatica HOM05D002505 ORTHO05D006559 3.6e-78 296.6 425 48.7
CAN.G134.186 Capsicum annuum HOM05D002505 ORTHO05D006559 1.8e-77 294.3 343 60.1
EL10Ac5g10510 Beta vulgaris HOM05D002505 ORTHO05D006559 1.5e-76 291.2 556 39.4
Hund09330 Selenicereus undatus HOM05D002505 ORTHO05D006559 8.4e-75 285.4 528 43.6
Ah.09g227860 Amaranthus hybridus HOM05D002505 ORTHO05D006559 1.1e-74 285.0 533 40.0
HPP92_002279 Vanilla planifolia HOM05D002505 ORTHO05D006559 1.9e-74 284.3 409 42.5
AUR62011379 Chenopodium quinoa HOM05D002505 ORTHO05D006559 4.6e-73 279.6 518 43.4
Rhsim06G0244600 Rhododendron simsii HOM05D002505 ORTHO05D006559 1.8e-72 277.7 511 40.7
Lsat_1_v5_gn_5_3041 Lactuca sativa HOM05D002505 ORTHO05D006559 1.5e-71 274.6 512 43.4
Sp1g40180 Schrenkiella parvula HOM05D002505 ORTHO05D006559 1.5e-71 274.6 442 45.9
THA.LOC104822601 Tarenaya hassleriana HOM05D002505 ORTHO05D006559 1.5e-71 274.6 420 45.0
AUR62002958 Chenopodium quinoa HOM05D002505 ORTHO05D006559 1.1e-69 268.5 459 39.7
AUR62007763 Chenopodium quinoa HOM05D002505 ORTHO05D006559 5.3e-69 266.2 423 42.3
AUR62016680 Chenopodium quinoa HOM05D002505 ORTHO05D006559 7.6e-68 262.3 307 52.8
Aqoxy1G00117 Aquilegia oxysepala HOM05D002505 ORTHO05D006559 1.3e-67 261.5 531 41.1
Sabra15G0148600 Salix brachista HOM05D002505 ORTHO05D006559 1.3e-67 261.5 542 38.0
BcaB02g10898 Brassica carinata HOM05D002505 ORTHO05D006559 1.7e-67 261.2 428 44.4
ATR0057G033 Amborella trichopoda HOM05D002505 ORTHO05D006559 8.4e-67 258.8 444 41.9
DCAR_009664 Daucus carota HOM05D002505 ORTHO05D006559 2.5e-66 257.3 191 64.4
HanXRQChr05g0159341 Helianthus annuus HOM05D002505 ORTHO05D006559 4.2e-66 256.5 188 67.6
PSO170G3666 Papaver somniferum HOM05D002505 ORTHO05D006559 4.2e-66 256.5 435 46.0
BcaB07g33312 Brassica carinata HOM05D002505 ORTHO05D006559 9.3e-66 255.4 323 55.1
A06p00890 Brassica napus HOM05D001023 ORTHO05D006559 1.6e-65 254.6 320 53.1
ECA246G4077 Erigeron canadensis HOM05D002505 ORTHO05D006559 1.6e-65 254.6 536 41.0
CDE05G0972 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 2.7e-65 253.8 516 41.3
CARHR043910 Cardamine hirsuta HOM05D002505 ORTHO05D006559 6.0e-65 252.7 571 39.2
Ciclev10019766m.g Citrus clementina HOM05D002505 ORTHO05D006559 1.3e-64 251.5 406 48.8
AL1G62310 Arabidopsis lyrata HOM05D002505 ORTHO05D006559 5.1e-64 249.6 557 39.0
C06p09440 Brassica napus HOM05D001023 ORTHO05D006559 1.1e-63 248.4 318 52.5
BcaC08g43545 Brassica carinata HOM05D002505 ORTHO05D006559 1.5e-63 248.1 411 45.5
AT1G53645 Arabidopsis thaliana HOM05D002505 ORTHO05D006559 2.5e-63 247.3 567 38.8
BolC6t36013H Brassica oleracea HOM05D001023 ORTHO05D006559 2.5e-63 247.3 411 45.5
Carub.0001s4291 Capsella rubella HOM05D002505 ORTHO05D006559 3.3e-63 246.9 553 41.0
PSO017G2893 Papaver somniferum HOM05D002505 ORTHO05D006559 5.7e-63 246.1 532 42.3
BraA06t23318Z Brassica rapa HOM05D001023 ORTHO05D006559 7.4e-63 245.7 526 42.4
Thhalv10011382m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 9.6e-63 245.4 558 41.2
Lj1C206G15 Lonicera japonica HOM05D002505 ORTHO05D006559 9.6e-63 245.4 165 74.5
SHI32899 Sapria himalayana HOM05D002505 ORTHO05D006559 3.7e-62 243.4 400 41.5
unitig_21.g20249 Utricularia gibba HOM05D002505 ORTHO05D006559 2.4e-61 240.7 221 57.0
Aa31LG10G1650 Aethionema arabicum HOM05D002505 ORTHO05D006559 1.2e-60 238.4 563 40.0
CDE02G1608 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 1.5e-60 238.0 337 43.9
Os06g0664400 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D006559 7.9e-57 225.7 192 55.2
Zm00001eb060430 Zea mays HOM05D002505 ORTHO05D006559 1.4e-53 214.9 450 36.9
BolC6t36693H Brassica oleracea HOM05D002505 ORTHO05D006559 3.2e-50 203.8 165 61.2
Haze_18498 Corylus avellana HOM05D002505 ORTHO05D006559 1.2e-49 201.8 335 50.4
QL04p094522 Quercus lobata HOM05D002505 ORTHO05D000632 1.2e-49 201.8 612 34.0
Dinv17234 Davidia involucrata HOM05D002505 ORTHO05D006559 4.6e-49 199.9 434 36.6
A05p18000 Brassica napus HOM05D002505 ORTHO05D006559 3.7e-46 190.3 177 56.5
BraA05t20694Z Brassica rapa HOM05D002505 ORTHO05D006559 3.7e-46 190.3 177 56.5
C06p15180 Brassica napus HOM05D002505 ORTHO05D006559 2.6e-44 184.1 139 65.5
Glyma.15G135900 Glycine max HOM05D002505 ORTHO05D006559 7.7e-44 182.6 112 78.6
Thhalv10012156m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 4.5e-36 156.8 107 68.2
BcaC08g44112 Brassica carinata HOM05D002505 ORTHO05D006559 4.2e-34 150.2 139 59.0
Dinv29488 Davidia involucrata HOM05D002505 ORTHO05D006559 2.3e-32 144.4 88 76.1
Ah.07g202770 Amaranthus hybridus HOM05D002505 ORTHO05D006559 1.4e-29 135.2 91 72.5
Ah.13g066500 Amaranthus hybridus HOM05D002505 ORTHO05D006559 1.4e-29 135.2 433 32.1
AagrBONN_evm.TU.Sc2ySwM_228.276 Anthoceros agrestis HOM05D002505 ORTHO05D006559 8.3e-22 109.4 149 36.9
Mapoly0043s0004 Marchantia polymorpha HOM05D002505 ORTHO05D006559 2.0e-20 104.8 167 35.9
Pp3c12_26140 Physcomitrium patens HOM05D002505 ORTHO05D006559 2.0e-20 104.8 170 35.9
Actinidia26206 Actinidia chinensis HOM05D002505 ORTHO05D006559 1.0e-19 102.4 64 75.0
CSS0015020 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 2.3e-19 101.3 291 35.1
QL04p094482 Quercus lobata HOM05D000280 ORTHO05D006559 1.1e-18 99.0 61 80.3
RcHm_v2.0_Chr5g0023281 Rosa chinensis HOM05D002505 ORTHO05D006559 1.1e-18 99.0 60 83.3
Haze_18499 Corylus avellana HOM05D002505 ORTHO05D006559 6.1e-17 93.2 61 73.8
Ah.13g066490 Amaranthus hybridus HOM05D002505 ORTHO05D006559 2.3e-16 91.3 63 74.6
SEGI_13390 Sequoiadendron giganteum HOM05D002505 ORTHO05D006559 4.9e-14 83.6 82 47.6
Actinidia26205 Actinidia chinensis HOM05D002505 ORTHO05D006559 4.4e-07 60.5 166 30.1
CBR_g41404 Chara braunii HOM05D002505 ORTHO05D006559 3.7e-06 57.4 72 34.7
COL.COLO4_21461 Corchorus olitorius HOM05D002505 ORTHO05D006559 4.9e-06 57.0 278 33.5


User provided reference genes

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