Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_18588_v3 Cicer arietinum L. HOM05D007160 ORTHO05D005331 9.1e-130 467.2 268 100.0
Medtr4g088385 Medicago truncatula HOM05D007160 ORTHO05D005331 6.2e-62 241.9 340 55.9
TPR.G19911 Trifolium pratense HOM05D007160 ORTHO05D005331 3.2e-50 203.0 334 48.2
VMungo0251G1795 Vigna mungo HOM05D007160 ORTHO05D005331 4.0e-45 186.0 360 43.9
Lj4g0028244 Lotus japonicus HOM05D007160 ORTHO05D005331 2.1e-38 163.7 273 52.4
Glyma.07G201100 Glycine max HOM05D007160 ORTHO05D005331 6.2e-38 162.2 358 41.6
VMungo0540G2483 Vigna mungo HOM05D007160 ORTHO05D005331 2.4e-37 160.2 287 42.5
Phvul.006G182700 Phaseolus vulgaris HOM05D007160 ORTHO05D005331 2.9e-35 153.3 293 39.9
Medtr2g014400 Medicago truncatula HOM05D007160 ORTHO05D005331 1.1e-34 151.4 260 49.2
Glyma.15G077600 Glycine max HOM05D007160 ORTHO05D005331 2.5e-34 150.2 288 49.7
Glyma.13G175300 Glycine max HOM05D007160 ORTHO05D005331 4.6e-33 146.0 358 41.9
Lalb_Chr20g0121591 Lupinus albus HOM05D007160 ORTHO05D005331 6.7e-32 142.1 265 45.3
Cfa000523 Carpinus fangiana HOM05D007160 ORTHO05D005331 3.3e-31 139.8 267 46.8
Psat1g203080 Pisum sativum HOM05D007160 ORTHO05D005331 3.3e-31 139.8 261 44.8
arahy.Tifrunner.gnm1.ann1.704E4A Arachis hypogaea HOM05D007160 ORTHO05D005331 1.6e-30 137.5 278 48.6
Lj6g0014856 Lotus japonicus HOM05D007160 ORTHO05D005331 3.7e-30 136.3 303 43.2
Phvul.002G232100 Phaseolus vulgaris HOM05D007160 ORTHO05D005331 8.2e-30 135.2 350 38.3
Glyma.13G236100 Glycine max HOM05D007160 ORTHO05D005331 5.3e-29 132.5 288 45.1
Ca_00358_v3 Cicer arietinum L. HOM05D007160 ORTHO05D005331 1.5e-28 131.0 271 48.7
Ca_30973_v3 Cicer arietinum L. HOM05D007160 ORTHO05D005331 1.5e-28 131.0 271 48.7
Lalb_Chr09g0327841 Lupinus albus HOM05D007160 ORTHO05D005331 7.1e-26 122.1 359 34.3
arahy.Tifrunner.gnm1.ann1.AUV6LD Arachis hypogaea HOM05D007160 ORTHO05D005331 5.1e-24 115.9 281 39.9
Oeu014779.1 Olea europaea HOM05D007160 ORTHO05D005331 1.8e-21 107.5 280 35.0
CiPaw.10G052400 Carya illinoinensis HOM05D007160 ORTHO05D005331 2.0e-20 104.0 260 45.4
Haze_06386 Corylus avellana HOM05D007160 ORTHO05D005331 3.8e-19 99.8 276 37.7
ClCG01G023230 Citrullus lanatus HOM05D007160 ORTHO05D005331 1.9e-18 97.4 295 31.9
Prupe.4G052200 Prunus persica HOM05D007160 ORTHO05D005331 2.5e-18 97.1 273 40.3
Dinv17351 Davidia involucrata HOM05D007160 ORTHO05D005331 7.2e-18 95.5 137 49.6
MD05G1310400 Malus domestica HOM05D007160 ORTHO05D005331 7.2e-18 95.5 325 37.8
QL05p042103 Quercus lobata HOM05D007160 ORTHO05D005331 9.4e-18 95.1 86 67.4
QL05p042154 Quercus lobata HOM05D007160 ORTHO05D005331 9.4e-18 95.1 86 67.4
Duzib192G1060 Durio zibethinus HOM05D007160 ORTHO05D005331 1.6e-17 94.4 288 33.3
Psat7g116440 Pisum sativum HOM05D007160 ORTHO05D005331 2.1e-17 94.0 54 87.0
CiPaw.09G063200 Carya illinoinensis HOM05D007160 ORTHO05D005331 3.6e-17 93.2 264 37.9
Potri.004G048301 Populus trichocarpa HOM05D007160 ORTHO05D005331 4.6e-17 92.8 257 39.3
Sed0007130 Sechium edule HOM05D007160 ORTHO05D005331 2.3e-16 90.5 277 32.9
Duzib235G1074 Durio zibethinus HOM05D007160 ORTHO05D005331 2.0e-15 87.4 340 32.9
TAR627G1090 Trochodendron aralioides HOM05D018497 ORTHO05D005331 4.3e-15 86.3 137 45.3
Potri.011G057500 Populus trichocarpa HOM05D007160 ORTHO05D005331 5.7e-15 85.9 256 35.2
MSTRG.15854 Avicennia marina HOM05D007160 ORTHO05D005331 7.4e-15 85.5 299 32.1
Duzib160G0215 Durio zibethinus HOM05D007160 ORTHO05D005331 2.2e-14 84.0 269 36.4
Prupe.4G052000 Prunus persica HOM05D007160 ORTHO05D005331 6.3e-14 82.4 98 56.1
Hma1.2p1_0558F.1_g178530 Hydrangea macrophylla HOM05D007160 ORTHO05D005331 1.1e-13 81.6 281 35.6
PGR042G2677 Punica granatum HOM05D007160 ORTHO05D005331 1.4e-13 81.3 298 32.2
Actinidia16571 Actinidia chinensis HOM05D007160 ORTHO05D005331 1.8e-13 80.9 86 60.5
Sabra11G0039600 Salix brachista HOM05D007160 ORTHO05D005331 6.9e-13 79.0 275 32.4
DCAR_004048 Daucus carota HOM05D007160 ORTHO05D005331 9.1e-13 78.6 127 45.7
DCAR_008006 Daucus carota HOM05D007160 ORTHO05D005331 1.5e-12 77.8 272 36.0
Gohir.D10G028200 Gossypium hirsutum HOM05D007160 ORTHO05D005331 2.0e-12 77.4 252 36.5
FvH4_3g08671 Fragaria vesca HOM05D007160 ORTHO05D005331 2.6e-12 77.0 90 48.9
FAN11G0877 Fragaria x ananassa HOM05D007160 ORTHO05D005331 2.6e-12 77.0 90 48.9
ECA236G4287 Erigeron canadensis HOM05D007160 ORTHO05D005331 5.9e-12 75.9 286 31.8
Gorai.009G167000 Gossypium raimondii HOM05D007160 ORTHO05D005331 7.7e-12 75.5 247 33.2
Gohir.D05G162000 Gossypium hirsutum HOM05D007160 ORTHO05D005331 1.3e-11 74.7 247 32.4
Dinv40598 Davidia involucrata HOM05D007882 ORTHO05D009870 2.9e-11 73.6 252 37.7
SalBow8G5472 Salvia bowleyana HOM05D007160 ORTHO05D005331 3.8e-11 73.2 271 29.5
SalBow8G2878 Salvia bowleyana HOM05D007160 ORTHO05D005331 6.5e-11 72.4 271 29.5
Cc02_g13790 Coffea canephora HOM05D007160 ORTHO05D005331 1.1e-10 71.6 136 43.4
Manes.17G049000 Manihot esculenta HOM05D007160 ORTHO05D005331 1.1e-10 71.6 236 36.9
Sabra04G0030300 Salix brachista HOM05D007160 ORTHO05D005331 3.2e-10 70.1 281 34.2
SalBow8G4606 Salvia bowleyana HOM05D007160 ORTHO05D005331 4.2e-10 69.7 76 52.6
CANSAT35G1941 Cannabis sativa HOM05D007160 ORTHO05D005331 7.2e-10 68.9 267 37.1
Sed0008189 Sechium edule HOM05D007160 ORTHO05D005331 7.2e-10 68.9 89 50.6
AT2G33850 Arabidopsis thaliana HOM05D009159 ORTHO05D005331 2.1e-09 67.4 244 37.3
C03p75110 Brassica napus HOM05D009159 ORTHO05D005331 2.1e-09 67.4 281 30.6
Nitab4.5_0000516g0060 Nicotiana tabacum HOM05D007160 ORTHO05D005331 2.1e-09 67.4 131 42.7
TWI63G1823 Tripterygium wilfordii HOM05D007160 ORTHO05D005331 2.1e-09 67.4 313 32.9
Gorai.011G030000 Gossypium raimondii HOM05D007160 ORTHO05D005331 2.7e-09 67.0 179 35.2
AL1G42030 Arabidopsis lyrata HOM05D009159 ORTHO05D005331 4.7e-09 66.2 323 32.2
Thhalv10008366m.g Eutrema salsugineum HOM05D009159 ORTHO05D005331 6.1e-09 65.9 294 30.6
TPR.G11687 Trifolium pratense HOM05D007160 ORTHO05D005331 6.1e-09 65.9 234 32.1
AL4G29650 Arabidopsis lyrata HOM05D009159 ORTHO05D005331 7.9e-09 65.5 242 38.0
MSTRG.13207 Avicennia marina HOM05D007160 ORTHO05D005331 1.0e-08 65.1 269 26.0
Nitab4.5_0001375g0120 Nicotiana tabacum HOM05D007160 ORTHO05D005331 1.0e-08 65.1 134 38.8
MELO3C007263.2 Cucumis melo HOM05D007160 ORTHO05D005331 1.4e-08 64.7 293 28.3
Gohir.A10G027800 Gossypium hirsutum HOM05D007160 ORTHO05D005331 1.4e-08 64.7 297 33.3
CARHR027910 Cardamine hirsuta HOM05D009159 ORTHO05D005331 1.8e-08 64.3 261 31.0
Ciclev10016200m.g Citrus clementina HOM05D007160 ORTHO05D005331 1.8e-08 64.3 300 30.7
FAN21G2372 Fragaria x ananassa HOM05D007160 ORTHO05D005331 1.8e-08 64.3 161 34.2
EL10Ac8g20435 Beta vulgaris HOM05D007160 ORTHO05D005331 2.3e-08 63.9 88 48.9
Medtr2g090660 Medicago truncatula HOM05D008876 ORTHO05D010747 2.3e-08 63.9 278 32.0
Thhalv10017182m.g Eutrema salsugineum HOM05D009159 ORTHO05D005331 3.0e-08 63.5 271 30.3
Manes.12G089700 Manihot esculenta HOM05D008876 ORTHO05D010747 3.9e-08 63.2 281 32.0
Nitab4.5_0001375g0140 Nicotiana tabacum HOM05D007160 ORTHO05D005331 3.9e-08 63.2 139 37.4
MD10G1289700 Malus domestica HOM05D007160 ORTHO05D005331 5.1e-08 62.8 290 35.5
Nitab4.5_0000516g0090 Nicotiana tabacum HOM05D007160 ORTHO05D005331 5.1e-08 62.8 121 41.3
Sp4g16260 Schrenkiella parvula HOM05D009159 ORTHO05D005331 5.1e-08 62.8 287 28.6
BcaB03g12106 Brassica carinata HOM05D009159 ORTHO05D005331 6.7e-08 62.4 282 31.2
Nitab4.5_0001375g0150 Nicotiana tabacum HOM05D007160 ORTHO05D005331 6.7e-08 62.4 122 38.5
Sopen02g022600 Solanum pennellii HOM05D007160 ORTHO05D005331 8.8e-08 62.0 115 44.3
Peaxi162Scf01018g00012 Petunia axillaris HOM05D007160 ORTHO05D005331 1.1e-07 61.6 300 33.0
BolC3t19771H Brassica oleracea HOM05D009159 ORTHO05D005331 1.5e-07 61.2 281 30.2
FAN16G2322 Fragaria x ananassa HOM05D007160 ORTHO05D005331 1.5e-07 61.2 141 36.2
Thecc.06G181500 Theobroma cacao HOM05D007160 ORTHO05D005331 1.5e-07 61.2 158 34.8
PGSC0003DMG400022807 Solanum tuberosum HOM05D007160 ORTHO05D005331 2.0e-07 60.8 95 38.9
THA.LOC104820566 Tarenaya hassleriana HOM05D009159 ORTHO05D005331 2.0e-07 60.8 256 30.1
Oeu001099.1 Olea europaea HOM05D007160 ORTHO05D005331 3.3e-07 60.1 306 32.4
Cpa.g.sc27.8 Carica papaya HOM05D007160 ORTHO05D005331 4.4e-07 59.7 260 33.8
BcaC01g00047 Brassica carinata HOM05D009159 ORTHO05D005331 5.7e-07 59.3 281 29.9
A08p25580 Brassica napus HOM05D009159 ORTHO05D005331 7.4e-07 58.9 277 32.1
BraA08t34510Z Brassica rapa HOM05D009159 ORTHO05D005331 7.4e-07 58.9 277 32.1
Solyc02g077710.1 Solanum lycopersicum HOM05D007160 ORTHO05D005331 7.4e-07 58.9 143 38.5
Nitab4.5_0006098g0020 Nicotiana tabacum HOM05D007160 ORTHO05D005331 9.7e-07 58.5 91 46.2
PSO832G0372 Papaver somniferum HOM05D025247 ORTHO05D050219 1.7e-06 57.8 319 27.9
Hma1.2p1_0002F.1_g002230 Hydrangea macrophylla HOM05D008876 ORTHO05D010747 2.8e-06 57.0 275 32.0
Sc17g0005960 Simmondsia chinensis HOM05D028926 ORTHO05D005331 3.7e-06 56.6 283 26.9
Nitab4.5_0000516g0070 Nicotiana tabacum HOM05D007160 ORTHO05D005331 4.8e-06 56.2 134 36.6
Nitab4.5_0003341g0030 Nicotiana tabacum HOM05D007160 ORTHO05D005331 6.3e-06 55.8 125 38.4
BcaB03g13928 Brassica carinata HOM05D009159 ORTHO05D005331 8.2e-06 55.5 279 32.3
TAR624G0339 Trochodendron aralioides HOM05D007160 ORTHO05D005331 8.2e-06 55.5 178 35.4
TAR629G2975 Trochodendron aralioides HOM05D018497 ORTHO05D021348 8.2e-06 55.5 130 35.4


User provided reference genes

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