Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_18541_v3 Cicer arietinum L. HOM05D006133 ORTHO05D007855 7.4e-90 334.0 182 100.0
Medtr4g088855 Medicago truncatula HOM05D006133 ORTHO05D007855 2.2e-81 305.8 174 95.4
TPR.G12027 Trifolium pratense HOM05D006133 ORTHO05D007855 1.2e-79 300.1 174 93.1
Glyma.13G179800 Glycine max HOM05D006133 ORTHO05D007855 2.4e-72 275.8 174 85.6
Glyma.07G196100 Glycine max HOM05D006133 ORTHO05D007855 1.6e-71 273.1 174 84.5
Phvul.002G234200 Phaseolus vulgaris HOM05D006133 ORTHO05D007855 1.3e-70 270.0 174 83.9
VMungo0251G0712 Vigna mungo HOM05D006133 ORTHO05D007855 1.3e-70 270.0 174 83.9
Lj4g0021405 Lotus japonicus HOM05D006133 ORTHO05D007855 8.5e-70 267.3 174 84.5
arahy.Tifrunner.gnm1.ann1.YAJ938 Arachis hypogaea HOM05D006133 ORTHO05D007855 2.2e-65 252.7 185 77.3
CiPaw.09G059200 Carya illinoinensis HOM05D006133 ORTHO05D007855 6.3e-65 251.1 174 78.7
QL05p040164 Quercus lobata HOM05D006133 ORTHO05D007855 1.6e-63 246.5 173 76.9
arahy.Tifrunner.gnm1.ann1.Y5A5WX Arachis hypogaea HOM05D006133 ORTHO05D007855 2.7e-63 245.7 173 79.2
Manes.16G026900 Manihot esculenta HOM05D006133 ORTHO05D007855 2.3e-62 242.7 174 75.9
Psat7g113640 Pisum sativum HOM05D006133 ORTHO05D007855 5.6e-61 238.0 174 78.7
Thecc.06G188500 Theobroma cacao HOM05D006133 ORTHO05D007855 9.5e-61 237.3 174 74.1
Hma1.2p1_0785F.1_g217580 Hydrangea macrophylla HOM05D006133 ORTHO05D007855 1.2e-60 236.9 175 73.7
Cc02_g13300 Coffea canephora HOM05D006133 ORTHO05D007855 3.6e-60 235.3 174 73.6
Haze_06477 Corylus avellana HOM05D006133 ORTHO05D007855 1.4e-59 233.4 174 72.4
ClCG03G006010 Citrullus lanatus HOM05D006133 ORTHO05D007855 3.4e-58 228.8 174 70.7
COL.COLO4_31481 Corchorus olitorius HOM05D006133 ORTHO05D007855 4.4e-58 228.4 173 73.4
Gorai.011G027600 Gossypium raimondii HOM05D006133 ORTHO05D007855 5.7e-58 228.0 174 71.3
Cfa000437 Carpinus fangiana HOM05D006133 ORTHO05D007855 7.5e-58 227.6 174 71.8
Cc01_g03530 Coffea canephora HOM05D006133 ORTHO05D007855 1.7e-57 226.5 167 74.3
Dinv40551 Davidia involucrata HOM05D006133 ORTHO05D007855 2.2e-57 226.1 174 72.4
Gohir.A10G025600 Gossypium hirsutum HOM05D006133 ORTHO05D007855 3.7e-57 225.3 174 70.1
Lj1A1206T67 Lonicera japonica HOM05D006133 ORTHO05D007855 3.7e-57 225.3 174 71.3
Actinidia05630 Actinidia chinensis HOM05D006133 ORTHO05D007855 4.9e-57 224.9 174 73.0
MELO3C002599.2 Cucumis melo HOM05D006133 ORTHO05D007855 4.9e-57 224.9 174 69.5
CsaV3_1G012270 Cucumis sativus L. HOM05D006133 ORTHO05D007855 4.9e-57 224.9 174 69.5
Atru.chr10.1894 Acer truncatum HOM05D006133 ORTHO05D007855 1.1e-56 223.8 174 70.1
Cpa.g.sc27.45 Carica papaya HOM05D006133 ORTHO05D007855 4.1e-56 221.9 170 72.4
Potri.004G042800 Populus trichocarpa HOM05D006133 ORTHO05D007855 4.1e-56 221.9 174 70.7
TAR628G0719 Trochodendron aralioides HOM05D006133 ORTHO05D007855 5.4e-56 221.5 174 70.1
ECA234G2723 Erigeron canadensis HOM05D006133 ORTHO05D007855 9.2e-56 220.7 174 68.4
Duzib235G0895 Durio zibethinus HOM05D006133 ORTHO05D007855 1.2e-55 220.3 169 69.8
Hund23730 Selenicereus undatus HOM05D006133 ORTHO05D007855 1.2e-55 220.3 174 69.5
Hund23731 Selenicereus undatus HOM05D006133 ORTHO05D007855 1.2e-55 220.3 174 69.5
CSS0047692 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 3.5e-55 218.8 174 69.5
Migut.M01145 Erythranthe guttata HOM05D006133 ORTHO05D007855 3.5e-55 218.8 174 69.5
Carub.0004s1546 Capsella rubella HOM05D006133 ORTHO05D007855 1.3e-54 216.9 174 67.2
MBI09_g12165_MAGBIO Magnolia biondii HOM05D006133 ORTHO05D007855 3.0e-54 215.7 173 67.1
AUR62017011 Chenopodium quinoa HOM05D006133 ORTHO05D007855 3.9e-54 215.3 174 67.8
PSO478G5317 Papaver somniferum HOM05D006133 ORTHO05D007855 5.0e-54 214.9 173 65.9
CSS0042278 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 8.6e-54 214.2 174 69.0
Prupe.4G046300 Prunus persica HOM05D006133 ORTHO05D007855 8.6e-54 214.2 174 67.8
PSO478G1675 Papaver somniferum HOM05D006133 ORTHO05D007855 4.3e-53 211.8 173 64.7
AUR62014816 Chenopodium quinoa HOM05D006133 ORTHO05D007855 5.6e-53 211.5 174 67.2
unitig_22.g6229 Utricularia gibba HOM05D006133 ORTHO05D007855 1.6e-52 209.9 173 66.5
BcaC02g07769 Brassica carinata HOM05D006133 ORTHO05D007855 3.6e-52 208.8 174 66.7
FvH4_3g09320 Fragaria vesca HOM05D006133 ORTHO05D007855 4.7e-52 208.4 176 65.9
Sc05g0007700 Simmondsia chinensis HOM05D006133 ORTHO05D007855 8.0e-52 207.6 174 65.5
RcHm_v2.0_Chr5g0008281 Rosa chinensis HOM05D006133 ORTHO05D007855 1.4e-51 206.8 169 67.5
BolC4t27810H Brassica oleracea HOM05D006133 ORTHO05D007855 1.8e-51 206.5 175 65.7
Peaxi162Scf00736g00427 Petunia axillaris HOM05D006133 ORTHO05D007855 3.1e-51 205.7 185 63.2
AT2G33793 Arabidopsis thaliana HOM05D006133 ORTHO05D007855 5.2e-51 204.9 175 65.1
CARHR127900 Cardamine hirsuta HOM05D006133 ORTHO05D007855 5.2e-51 204.9 175 64.0
Oeu057904.1 Olea europaea HOM05D006133 ORTHO05D007855 6.8e-51 204.5 174 66.7
THA.LOC104814218 Tarenaya hassleriana HOM05D006133 ORTHO05D007855 8.9e-51 204.1 172 66.3
Thhalv10017234m.g Eutrema salsugineum HOM05D006133 ORTHO05D007855 3.4e-50 202.2 175 65.7
Ah.09g237330 Amaranthus hybridus HOM05D006133 ORTHO05D007855 5.8e-50 201.4 187 61.5
ATR0584G083 Amborella trichopoda HOM05D006133 ORTHO05D007855 9.8e-50 200.7 168 66.1
AL4G29540 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 8.3e-49 197.6 175 62.9
FAN16G1924 Fragaria x ananassa HOM05D006133 ORTHO05D007855 4.1e-48 195.3 181 61.9
Lsat_1_v5_gn_4_52940 Lactuca sativa HOM05D006133 ORTHO05D007855 3.5e-47 192.2 174 61.5
Sopen02g023140 Solanum pennellii HOM05D006133 ORTHO05D007855 3.5e-47 192.2 174 62.6
HanXRQChr16g0517711 Helianthus annuus HOM05D006133 ORTHO05D007855 4.6e-47 191.8 174 62.6
CAN.G1164.26 Capsicum annuum HOM05D006133 ORTHO05D007855 3.0e-46 189.1 174 61.5
PGSC0003DMG400029689 Solanum tuberosum HOM05D006133 ORTHO05D007855 6.6e-46 188.0 174 61.5
TWI38G1277 Tripterygium wilfordii HOM05D006133 ORTHO05D007855 4.3e-45 185.3 174 62.1
Solyc02g078280.3 Solanum lycopersicum HOM05D006133 ORTHO05D007855 7.3e-45 184.5 170 62.4
Ciclev10017918m.g Citrus clementina HOM05D006133 ORTHO05D007855 1.2e-44 183.7 145 71.0
EL10Ac8g20377 Beta vulgaris HOM05D006133 ORTHO05D007855 1.8e-43 179.9 146 67.1
Sp4g16180 Schrenkiella parvula HOM05D006133 ORTHO05D007855 1.5e-42 176.8 175 60.0
CDE04G1633 Ceratophyllum demersum HOM05D006133 ORTHO05D007855 3.4e-42 175.6 174 57.5
C04p15330 Brassica napus HOM05D006133 ORTHO05D007855 5.8e-42 174.9 151 64.2
Nitab4.5_0007940g0050 Nicotiana tabacum HOM05D006133 ORTHO05D007855 5.8e-42 174.9 174 60.3
A04p26010 Brassica napus HOM05D006133 ORTHO05D007855 9.8e-42 174.1 175 58.9
Nitab4.5_0003432g0010 Nicotiana tabacum HOM05D006133 ORTHO05D007855 1.7e-41 173.3 174 60.3
Os03g0837800 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 2.2e-41 172.9 173 57.8
FAN11G1298 Fragaria x ananassa HOM05D006133 ORTHO05D007855 2.9e-41 172.6 149 64.4
Rhsim13G0177600 Rhododendron simsii HOM05D006133 ORTHO05D007855 2.9e-41 172.6 217 51.6
BcaC02g11457 Brassica carinata HOM05D006133 ORTHO05D007855 3.7e-41 172.2 151 64.2
BraA04t18104Z Brassica rapa HOM05D006133 ORTHO05D007855 3.7e-41 172.2 165 59.4
BolC4t23106H Brassica oleracea HOM05D006133 ORTHO05D007855 3.2e-40 169.1 171 58.5
Potri.011G051900 Populus trichocarpa HOM05D006133 ORTHO05D007855 3.2e-40 169.1 174 59.2
FAN21G1061 Fragaria x ananassa HOM05D006133 ORTHO05D007855 4.1e-40 168.7 146 64.4
Zm00001eb063880 Zea mays HOM05D006133 ORTHO05D007855 4.1e-40 168.7 173 55.5
FAN25G2154 Fragaria x ananassa HOM05D006133 ORTHO05D007855 5.4e-40 168.3 148 62.8
C04p63360 Brassica napus HOM05D006133 ORTHO05D007855 1.2e-39 167.2 162 58.6
Nn1g08778 Nelumbo nucifera HOM05D006133 ORTHO05D007855 2.1e-39 166.4 174 56.3
DCAR_028075 Daucus carota HOM05D006133 ORTHO05D007855 2.8e-36 156.0 156 60.3
SMO353G0258 Selaginella moellendorffii HOM05D006133 ORTHO05D007855 1.8e-35 153.3 166 50.6
Sed0025328 Sechium edule HOM05D006133 ORTHO05D007855 7.6e-34 147.9 127 65.4
Gohir.D10G026300 Gossypium hirsutum HOM05D006133 ORTHO05D007855 1.7e-33 146.7 118 66.1
CANSAT35G1333 Cannabis sativa HOM05D006133 ORTHO05D007855 2.2e-33 146.4 174 52.9
Dinv07556 Davidia involucrata HOM05D006133 ORTHO05D007855 2.9e-33 146.0 117 70.1
AagrBONN_evm.TU.Sc2ySwM_228.202 Anthoceros agrestis HOM05D006133 ORTHO05D007855 4.9e-33 145.2 167 45.5
Cc01_g03500 Coffea canephora HOM05D006133 ORTHO05D007855 1.6e-31 140.2 177 50.8
Solyc02g078290.4 Solanum lycopersicum HOM05D006133 ORTHO05D007855 1.3e-30 137.1 122 62.3
MD05G1313300 Malus domestica HOM05D006133 ORTHO05D007855 2.3e-30 136.3 118 61.9
Sabra11G0035700 Salix brachista HOM05D006133 ORTHO05D007855 2.3e-30 136.3 174 50.6
Lalb_Chr05g0218461 Lupinus albus HOM05D006133 ORTHO05D007855 3.6e-28 129.0 174 50.6
SGA_v2.0_scaffold22G09717 Striga asiatica HOM05D006133 ORTHO05D007855 3.1e-27 125.9 178 48.9
PGR004G1018 Punica granatum HOM05D006133 ORTHO05D007855 6.9e-27 124.8 174 50.6
Mapoly0103s0052 Marchantia polymorpha HOM05D006133 ORTHO05D007855 3.4e-26 122.5 168 40.5
GSVIVG01033625001 Vitis vinifera HOM05D006133 ORTHO05D007855 2.2e-25 119.8 169 47.3
AL4G11580 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 2.7e-23 112.8 175 45.7
BcaB02g10593 Brassica carinata HOM05D006133 ORTHO05D007855 1.9e-21 106.7 101 62.4
Zm00001eb304600 Zea mays HOM05D006133 ORTHO05D007855 4.0e-19 99.0 153 39.2
Os07g0256300 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 9.9e-18 94.4 142 43.7
HPP92_006840 Vanilla planifolia HOM05D006133 ORTHO05D007855 1.8e-14 83.6 65 69.2
A05p11770 Brassica napus HOM05D006133 ORTHO05D007855 6.7e-14 81.6 97 50.5
Prupe.4G042300 Prunus persica HOM05D006133 ORTHO05D007855 6.7e-14 81.6 68 67.6
SGA_v2.0_scaffold499G52489 Striga asiatica HOM05D006133 ORTHO05D007855 7.4e-13 78.2 172 36.6
Eucgr.B00901 Eucalyptus grandis HOM05D006133 ORTHO05D007855 6.2e-12 75.1 105 46.7
Eucgr.B00955 Eucalyptus grandis HOM05D006133 ORTHO05D007855 6.2e-12 75.1 105 47.6
Cpa.g.sc39.10 Carica papaya HOM05D006133 ORTHO05D007855 8.1e-12 74.7 94 51.1
Gohir.A01G166500 Gossypium hirsutum HOM05D006133 ORTHO05D007855 9.0e-11 71.2 50 72.0
Eucgr.B00904 Eucalyptus grandis HOM05D006133 ORTHO05D007855 4.5e-10 68.9 144 36.8
Os07g0208801 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 4.5e-10 68.9 67 55.2
BraA05t20121Z Brassica rapa HOM05D006133 ORTHO05D007855 2.2e-09 66.6 79 51.9
C04p15300 Brassica napus HOM05D006133 ORTHO05D007855 1.4e-08 63.9 48 70.8
HPP92_006839 Vanilla planifolia HOM05D006133 ORTHO05D007855 1.2e-07 60.8 55 58.2
Eucgr.B00952 Eucalyptus grandis HOM05D006133 ORTHO05D007855 1.0e-06 57.8 98 38.8
Gohir.A11G286823 Gossypium hirsutum HOM05D006133 ORTHO05D007855 1.3e-06 57.4 39 74.4


User provided reference genes

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