Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_18527_v3 Cicer arietinum L. HOM05D003782 ORTHO05D004361 0.0e+00 1483.4 774 100.0
TPR.G12054 Trifolium pratense HOM05D003782 ORTHO05D004361 0.0e+00 1176.0 966 69.4
Medtr4g089015 Medicago truncatula HOM05D003782 ORTHO05D004361 0.0e+00 1135.9 966 67.6
Psat7g113440 Pisum sativum HOM05D003782 ORTHO05D004361 0.0e+00 1122.8 990 65.3
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 3.5e-306 1054.7 936 66.0
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 7.8e-306 1053.5 880 69.2
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 4.4e-301 1037.7 881 68.9
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 5.8e-293 1010.7 871 67.5
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 2.9e-292 1008.4 878 67.4
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 1.1e-278 963.4 894 63.2
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 9.0e-278 960.3 894 63.1
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 1.6e-274 949.5 903 62.9
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 3.7e-263 911.8 901 61.8
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 1.6e-237 826.6 893 56.3
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 2.4e-230 802.7 881 55.8
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 4.7e-226 788.5 901 54.9
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 9.8e-224 780.8 902 53.7
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 1.3e-220 770.4 865 54.5
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 1.3e-220 770.4 903 54.2
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 1.7e-220 770.0 865 54.6
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 5.6e-219 765.0 916 53.1
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 1.6e-218 763.5 916 53.2
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 2.3e-217 759.6 906 53.2
Lj6g0013812 Lotus japonicus HOM05D003782 ORTHO05D004361 1.3e-215 753.8 750 58.3
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 8.3e-215 751.1 910 52.1
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 1.1e-214 750.7 785 57.6
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 3.5e-213 745.7 912 53.2
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 6.6e-212 741.5 943 50.3
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 1.1e-211 740.7 914 52.5
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 7.3e-211 738.0 920 50.9
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 4.9e-207 725.3 902 52.7
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 4.9e-207 725.3 908 51.7
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 4.1e-206 722.2 905 51.6
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 9.2e-206 721.1 919 50.5
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 6.0e-205 718.4 936 50.4
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.0e-204 717.6 901 50.2
Sed0005800 Sechium edule HOM05D003782 ORTHO05D004361 5.0e-204 715.3 926 49.6
Atru.chr10.1947 Acer truncatum HOM05D003782 ORTHO05D004361 2.5e-203 713.0 943 50.1
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 2.5e-203 713.0 919 51.7
FvH4_3g04800 Fragaria vesca HOM05D003782 ORTHO05D004361 1.6e-202 710.3 971 47.8
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 2.8e-202 709.5 974 47.5
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 5.2e-201 705.3 908 50.7
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.5e-200 703.7 971 47.9
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.7e-199 700.3 973 47.5
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 2.2e-199 699.9 919 50.3
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 7.8e-197 691.4 976 47.4
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 5.6e-195 685.3 884 50.5
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 2.1e-194 683.3 909 50.1
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 2.1e-194 683.3 998 46.5
Lalb_Chr20g0122011 Lupinus albus HOM05D003782 ORTHO05D004361 4.7e-194 682.2 721 56.4
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 3.1e-193 679.5 897 50.2
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 5.2e-193 678.7 878 49.3
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 8.9e-193 677.9 895 49.4
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 1.5e-192 677.2 949 47.2
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 1.5e-192 677.2 879 50.1
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 6.4e-191 671.8 917 49.1
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 6.4e-191 671.8 969 47.1
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 1.4e-190 670.6 781 52.5
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 1.7e-188 663.7 899 47.8
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 2.3e-188 663.3 718 54.9
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 6.6e-188 661.8 968 46.6
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 1.1e-187 661.0 970 47.0
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 2.8e-186 656.4 968 46.8
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 2.4e-185 653.3 870 49.0
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 5.2e-185 652.1 811 50.7
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 4.2e-182 642.5 733 52.8
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 5.4e-182 642.1 794 52.0
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 5.1e-180 635.6 894 47.9
CDE02G2556 Ceratophyllum demersum HOM05D003782 ORTHO05D004361 3.3e-179 632.9 886 46.6
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 4.3e-179 632.5 1090 42.4
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 7.3e-179 631.7 1025 44.4
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 3.6e-178 629.4 913 46.5
Dinv40534 Davidia involucrata HOM05D003782 ORTHO05D004361 1.1e-177 627.9 738 52.4
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.4e-177 627.5 913 46.5
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 3.1e-177 626.3 913 46.4
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 5.3e-177 625.5 953 46.0
C08p48360 Brassica napus HOM05D003782 ORTHO05D004361 2.0e-176 623.6 872 46.4
BolC8t52375H Brassica oleracea HOM05D003782 ORTHO05D004361 2.0e-176 623.6 872 46.4
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 4.5e-176 622.5 856 48.8
CARHR011250 Cardamine hirsuta HOM05D003782 ORTHO05D004361 5.8e-176 622.1 886 47.0
Thhalv10006765m.g Eutrema salsugineum HOM05D003782 ORTHO05D004361 1.3e-175 620.9 891 45.5
A06p07760 Brassica napus HOM05D003782 ORTHO05D004361 8.4e-175 618.2 886 46.5
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 1.1e-174 617.8 934 44.6
BraA06t23977Z Brassica rapa HOM05D003782 ORTHO05D004361 1.4e-174 617.5 886 46.4
C05p09350 Brassica napus HOM05D003782 ORTHO05D004361 4.2e-174 615.9 884 46.8
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 7.1e-174 615.1 894 45.7
Sp1g09750 Schrenkiella parvula HOM05D003782 ORTHO05D004361 2.7e-173 613.2 882 45.8
Aa31LG1G3850 Aethionema arabicum HOM05D003782 ORTHO05D004361 4.6e-173 612.5 900 45.8
AL1G22040 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 7.9e-173 611.7 886 45.7
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 1.3e-172 610.9 915 46.6
PSO210G1870 Papaver somniferum HOM05D003782 ORTHO05D004361 3.0e-172 609.8 980 43.2
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 2.5e-171 606.7 742 49.6
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 5.6e-171 605.5 891 44.9
BraA09t41812Z Brassica rapa HOM05D003782 ORTHO05D004361 7.4e-171 605.1 946 43.2
Sp2g03490 Schrenkiella parvula HOM05D003782 ORTHO05D004361 7.4e-171 605.1 873 46.0
BolC5t29675H Brassica oleracea HOM05D003782 ORTHO05D004361 1.3e-170 604.4 912 45.5
AT1G61030 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 1.6e-170 604.0 868 45.4
Carub.0001s1062 Capsella rubella HOM05D003782 ORTHO05D004361 2.8e-170 603.2 888 45.9
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 8.1e-170 601.7 967 43.5
Sed0026382 Sechium edule HOM05D003782 ORTHO05D004361 1.1e-169 601.3 873 45.4
AT1G11060 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 3.1e-169 599.7 884 46.4
PSO832G0898 Papaver somniferum HOM05D003782 ORTHO05D004361 3.1e-169 599.7 978 42.3
BcaC05g24980 Brassica carinata HOM05D003782 ORTHO05D004361 4.0e-169 599.4 806 47.6
Nitab4.5_0003668g0120 Nicotiana tabacum HOM05D003782 ORTHO05D004361 9.0e-169 598.2 961 43.9
AL2G15410 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 2.6e-168 596.7 867 45.7
A09p64830 Brassica napus HOM05D003782 ORTHO05D004361 9.9e-168 594.7 935 43.7
SalBow8G2382 Salvia bowleyana HOM05D003782 ORTHO05D004361 9.9e-168 594.7 779 49.8
EL10Ac8g20337 Beta vulgaris HOM05D003782 ORTHO05D004361 1.6e-165 587.4 939 45.0
CARHR052160 Cardamine hirsuta HOM05D003782 ORTHO05D004361 2.7e-165 586.6 870 45.3
Aa31LG2G9560 Aethionema arabicum HOM05D003782 ORTHO05D004361 1.8e-164 583.9 803 47.2
Hund23698 Selenicereus undatus HOM05D003782 ORTHO05D004361 2.3e-164 583.6 876 46.2
BcaC07g41789 Brassica carinata HOM05D003782 ORTHO05D004361 1.1e-163 581.3 894 44.7
AUR62014785 Chenopodium quinoa HOM05D003782 ORTHO05D004361 1.1e-163 581.3 850 45.9
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 4.8e-162 575.9 764 47.9
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 6.2e-162 575.5 764 47.9
AUR62016973 Chenopodium quinoa HOM05D003782 ORTHO05D004361 8.1e-162 575.1 805 46.8
Carub.0002s0417 Capsella rubella HOM05D003782 ORTHO05D004361 5.3e-161 572.4 861 45.9
ATR0680G033 Amborella trichopoda HOM05D003782 ORTHO05D004361 9.0e-161 571.6 911 43.2
Ah.14g089260 Amaranthus hybridus HOM05D003782 ORTHO05D004361 1.7e-159 567.4 931 44.4
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 1.8e-156 557.4 801 45.2
Sabra04G0024600 Salix brachista HOM05D003782 ORTHO05D004361 6.5e-151 538.9 793 46.8
HPP92_014533 Vanilla planifolia HOM05D003782 ORTHO05D004361 7.4e-147 525.4 912 40.7
Zm00001eb220930 Zea mays HOM05D003782 ORTHO05D004361 3.6e-141 506.5 860 41.0
Os10g0497000 Oryza sativa ssp. japonica HOM05D003782 ORTHO05D004361 6.3e-138 495.7 792 41.3
Ah.09g235740 Amaranthus hybridus HOM05D003782 ORTHO05D004361 2.5e-134 483.8 939 40.3
Migut.M01185 Erythranthe guttata HOM05D003782 ORTHO05D004361 4.1e-129 466.5 763 43.3
unitig_26.g9369 Utricularia gibba HOM05D003782 ORTHO05D004361 5.9e-128 462.6 709 43.2
Duzib192G0241 Durio zibethinus HOM05D003782 ORTHO05D004361 2.3e-124 450.7 924 39.8
Duzib235G1248 Durio zibethinus HOM05D003782 ORTHO05D004361 2.6e-123 447.2 816 43.8
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 1.3e-106 391.7 726 38.2
Mapoly0014s0099 Marchantia polymorpha HOM05D003782 ORTHO05D004361 1.8e-105 387.9 946 33.8
Pp3c9_20340 Physcomitrium patens HOM05D003782 ORTHO05D004361 2.9e-103 380.6 783 35.0
Pp3c9_20349 Physcomitrium patens HOM05D003782 ORTHO05D004361 2.9e-103 380.6 783 35.0
Cpa.g.sc27.74 Carica papaya HOM05D003782 ORTHO05D004361 1.5e-102 378.3 365 59.5
Zm00001eb044640 Zea mays HOM05D003782 ORTHO05D004361 3.0e-87 327.4 660 37.0
Lj6g0001672 Lotus japonicus HOM05D003782 ORTHO05D004361 1.2e-83 315.5 255 69.4
FAN07G0886 Fragaria x ananassa HOM05D003782 ORTHO05D004361 3.2e-81 307.4 285 57.2
ECA236G4595 Erigeron canadensis HOM05D003782 ORTHO05D004361 4.0e-76 290.4 523 41.5
Aqoxy6G00197 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 1.3e-74 285.4 258 63.6
Lj6g0027699 Lotus japonicus HOM05D003782 ORTHO05D004361 7.8e-72 276.2 264 58.7
SHI01818 Sapria himalayana HOM05D003782 ORTHO05D004361 5.8e-67 260.0 456 40.6
CBR_g19729 Chara braunii HOM05D003782 ORTHO05D004361 1.0e-63 249.2 956 26.6
SEGI_34470 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 7.6e-59 233.0 249 55.8
Oeu043706.1 Olea europaea HOM05D003782 ORTHO05D004361 3.5e-48 197.6 301 47.5
Cpa.g.sc27.75 Carica papaya HOM05D003782 ORTHO05D004361 1.5e-46 192.2 378 41.5
Sabra04G0024500 Salix brachista HOM05D003782 ORTHO05D004361 1.0e-42 179.5 140 70.7
CSS0036804 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.1e-36 159.5 380 35.5
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 1.8e-36 158.7 204 50.5
ECA236G3594 Erigeron canadensis HOM05D003782 ORTHO05D004361 1.8e-36 158.7 215 49.3
BcaC05g24978 Brassica carinata HOM05D003782 ORTHO05D004361 9.0e-36 156.4 189 55.6
SEGI_13110 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 2.2e-34 151.8 184 46.7
FAN28G2813 Fragaria x ananassa HOM05D003782 ORTHO05D004361 6.5e-34 150.2 144 59.7
TWI12G0412 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 2.7e-32 144.8 206 47.6
Zm00001eb006190 Zea mays HOM05D003782 ORTHO05D004361 1.7e-29 135.6 156 45.5
arahy.Tifrunner.gnm1.ann1.M5G8HU Arachis hypogaea HOM05D003782 ORTHO05D004361 5.3e-28 130.6 88 73.9
TWI12G0828 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 2.0e-27 128.6 162 50.0
arahy.Tifrunner.gnm1.ann1.S76ADD Arachis hypogaea HOM05D001687 ORTHO05D001608 1.4e-23 115.9 79 73.4
MD09G1213100 Malus domestica HOM05D003782 ORTHO05D004361 3.9e-23 114.4 69 75.4
VMungo0331G2027 Vigna mungo HOM05D003782 ORTHO05D004361 2.6e-22 111.7 84 71.4
Glyma.04G160500 Glycine max HOM05D003782 ORTHO05D004361 1.7e-21 109.0 93 67.7
arahy.Tifrunner.gnm1.ann1.R5EEB5 Arachis hypogaea HOM05D003782 ORTHO05D004361 1.4e-20 105.9 106 57.5
VMungo0251G1485 Vigna mungo HOM05D003782 ORTHO05D004361 2.4e-20 105.1 64 81.2
arahy.Tifrunner.gnm1.ann1.IMK82Y Arachis hypogaea HOM05D003782 ORTHO05D004361 1.2e-19 102.8 73 69.9
QL05p013418 Quercus lobata HOM05D003782 ORTHO05D004361 1.2e-19 102.8 57 91.2
arahy.Tifrunner.gnm1.ann1.IG0W9M Arachis hypogaea HOM05D003782 ORTHO05D004361 1.5e-19 102.4 96 58.3
Zm00001eb432110 Zea mays HOM05D003782 ORTHO05D004361 2.6e-19 101.7 89 58.4
Zm00001eb335960 Zea mays HOM05D003782 ORTHO05D004361 2.9e-18 98.2 118 44.9
Zm00001eb179180 Zea mays HOM05D003782 ORTHO05D004361 1.1e-17 96.3 89 56.2
Nn1g04009 Nelumbo nucifera HOM05D003782 ORTHO05D004361 9.4e-17 93.2 95 57.9
CSS0006007 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.1e-12 79.7 63 71.4
TAR626G0244 Trochodendron aralioides HOM05D003782 ORTHO05D004361 2.4e-12 78.6 68 51.5
CARHR034020 Cardamine hirsuta HOM05D003782 ORTHO05D004361 7.7e-11 73.6 92 44.6
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 1.3e-10 72.8 46 89.1
SHI01816 Sapria himalayana HOM05D005377 ORTHO05D003034 2.2e-10 72.0 67 62.7
Zm00001eb208870 Zea mays HOM05D000229 ORTHO05D004361 2.2e-10 72.0 126 38.9
Zm00001eb174580 Zea mays HOM05D003782 ORTHO05D004361 8.5e-10 70.1 66 48.5
Zm00001eb032810 Zea mays HOM05D003782 ORTHO05D004361 2.7e-08 65.1 60 53.3
CSS0046083 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 6.1e-08 63.9 136 42.6
Zm00001eb274810 Zea mays HOM05D003782 ORTHO05D004361 2.3e-07 62.0 55 58.2
CSS0040150 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 4.0e-07 61.2 48 70.8
MBI19_g13594_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 1.2e-06 59.7 60 41.7


User provided reference genes

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