Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_18506_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 4.0e-72 275.0 178 100.0
Ca_05765_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 2.0e-71 272.7 178 98.9
Psat2g043120 Pisum sativum HOM05D006436 ORTHO05D008011 2.6e-63 245.7 178 92.7
LjContig00141g0009494 Lotus japonicus HOM05D006436 ORTHO05D008011 9.9e-63 243.8 176 90.3
arahy.Tifrunner.gnm1.ann1.RB24L7 Arachis hypogaea HOM05D006436 ORTHO05D008011 4.2e-61 238.4 178 86.0
arahy.Tifrunner.gnm1.ann1.7TMM1B Arachis hypogaea HOM05D006436 ORTHO05D008011 9.3e-61 237.3 178 83.1
arahy.Tifrunner.gnm1.ann1.QIUU4Q Arachis hypogaea HOM05D006436 ORTHO05D008011 3.5e-60 235.3 178 85.4
Lalb_Chr16g0392121 Lupinus albus HOM05D006436 ORTHO05D008011 4.6e-60 235.0 178 87.6
Medtr5g077040 Medicago truncatula HOM05D006436 ORTHO05D008011 7.8e-60 234.2 177 88.7
Phvul.008G233200 Phaseolus vulgaris HOM05D006436 ORTHO05D008011 2.3e-59 232.6 177 84.2
arahy.Tifrunner.gnm1.ann1.1G92VG Arachis hypogaea HOM05D006436 ORTHO05D008011 8.7e-59 230.7 178 84.8
Glyma.14G210900 Glycine max HOM05D006436 ORTHO05D008011 1.9e-58 229.6 177 84.2
Eucgr.J01642 Eucalyptus grandis HOM05D006436 ORTHO05D008011 2.5e-58 229.2 178 82.0
QL08p017466 Quercus lobata HOM05D006436 ORTHO05D008011 2.5e-58 229.2 174 79.3
VMungo0647G0400 Vigna mungo HOM05D006436 ORTHO05D008011 5.6e-58 228.0 177 83.1
Manes.02G134600 Manihot esculenta HOM05D006436 ORTHO05D008011 8.1e-57 224.2 176 62.5
Thecc.09G311900 Theobroma cacao HOM05D006436 ORTHO05D008011 5.3e-56 221.5 175 82.3
FAN08G3413 Fragaria x ananassa HOM05D006436 ORTHO05D008011 2.0e-55 219.5 177 62.1
AT5G37290 Arabidopsis thaliana HOM05D006436 ORTHO05D008011 2.6e-55 219.2 179 79.3
MD09G1253300 Malus domestica HOM05D006436 ORTHO05D008011 4.5e-55 218.4 180 81.7
RcHm_v2.0_Chr7g0218931 Rosa chinensis HOM05D006436 ORTHO05D008011 4.5e-55 218.4 177 81.4
ECA234G4304 Erigeron canadensis HOM05D006436 ORTHO05D008011 7.6e-55 217.6 177 79.7
CiPaw.03G076800 Carya illinoinensis HOM05D006436 ORTHO05D008011 9.9e-55 217.2 174 82.8
Atru.chr1.2057 Acer truncatum HOM05D006436 ORTHO05D008011 2.9e-54 215.7 177 79.1
HanXRQChr10g0309911 Helianthus annuus HOM05D006436 ORTHO05D008011 2.9e-54 215.7 177 81.4
Gohir.D07G105500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 6.4e-54 214.5 175 81.7
Gorai.001G113600 Gossypium raimondii HOM05D006436 ORTHO05D008011 6.4e-54 214.5 175 81.7
Prupe.3G143200 Prunus persica HOM05D006436 ORTHO05D008011 1.4e-53 213.4 176 82.4
Aqoxy7G01157 Aquilegia oxysepala HOM05D006436 ORTHO05D008011 1.9e-53 213.0 174 80.5
FvH4_5g27560 Fragaria vesca HOM05D006436 ORTHO05D008011 1.9e-53 213.0 177 79.7
Potri.001G225300 Populus trichocarpa HOM05D006436 ORTHO05D008011 1.9e-53 213.0 177 80.2
CSS0031788 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 3.2e-53 212.2 174 81.6
Solyc04g014610.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 3.2e-53 212.2 174 80.5
Sopen04g006750 Solanum pennellii HOM05D006436 ORTHO05D008011 3.2e-53 212.2 174 80.5
Cpa.g.sc178.16 Carica papaya HOM05D006436 ORTHO05D008011 4.2e-53 211.8 176 79.5
Ciclev10022503m.g Citrus clementina HOM05D006436 ORTHO05D008011 7.1e-53 211.1 177 78.0
Gohir.A07G101500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 7.1e-53 211.1 175 81.1
MBI18_g05914_MAGBIO Magnolia biondii HOM05D006436 ORTHO05D008011 9.3e-53 210.7 174 77.0
THA.LOC104823829 Tarenaya hassleriana HOM05D006436 ORTHO05D008011 2.1e-52 209.5 174 78.7
GSVIVG01035239001 Vitis vinifera HOM05D006436 ORTHO05D008011 2.1e-52 209.5 175 80.6
TAR365G0111 Trochodendron aralioides HOM05D006436 ORTHO05D008011 2.7e-52 209.1 174 80.5
CAN.G268.8 Capsicum annuum HOM05D006436 ORTHO05D008011 4.6e-52 208.4 174 79.9
Hma1.2p1_0158F.1_g069740 Hydrangea macrophylla HOM05D006436 ORTHO05D008011 4.6e-52 208.4 175 80.6
Peaxi162Scf00442g00063 Petunia axillaris HOM05D006436 ORTHO05D008011 4.6e-52 208.4 174 79.3
FAN18G1736 Fragaria x ananassa HOM05D006436 ORTHO05D008011 6.0e-52 208.0 174 79.3
Lj4C253G7 Lonicera japonica HOM05D006436 ORTHO05D008011 6.0e-52 208.0 174 81.6
Rhsim11G0087100 Rhododendron simsii HOM05D006436 ORTHO05D008011 7.9e-52 207.6 173 81.5
FAN18G0548 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.0e-51 207.2 200 54.5
Nitab4.5_0005193g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 1.3e-51 206.8 174 79.3
Cc07_g12850 Coffea canephora HOM05D006436 ORTHO05D008011 1.8e-51 206.5 175 78.3
Carub.0007s3240 Capsella rubella HOM05D006436 ORTHO05D008011 3.0e-51 205.7 180 76.1
PGSC0003DMG400024110 Solanum tuberosum HOM05D006436 ORTHO05D008011 3.0e-51 205.7 174 79.3
PGR042G2272 Punica granatum HOM05D006436 ORTHO05D008011 1.1e-50 203.8 174 79.3
Sopen04g027290 Solanum pennellii HOM05D006436 ORTHO05D008011 1.1e-50 203.8 174 78.7
Cfa007759 Carpinus fangiana HOM05D006436 ORTHO05D008011 1.9e-50 203.0 174 59.2
Oeu012529.1 Olea europaea HOM05D006436 ORTHO05D008011 1.9e-50 203.0 175 78.9
Carub.0007s3243 Capsella rubella HOM05D006436 ORTHO05D008011 3.3e-50 202.2 176 76.7
MELO3C025074.2 Cucumis melo HOM05D006436 ORTHO05D008011 4.3e-50 201.8 175 78.9
Thhalv10027956m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 4.3e-50 201.8 179 76.5
Sed0003659 Sechium edule HOM05D006436 ORTHO05D008011 4.3e-50 201.8 174 80.5
Solyc04g071330.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 4.3e-50 201.8 174 78.2
CsaV3_5G020600 Cucumis sativus L. HOM05D006436 ORTHO05D008011 1.3e-49 200.3 175 78.9
CARHR215800 Cardamine hirsuta HOM05D006436 ORTHO05D008011 1.6e-49 199.9 179 75.4
TWI77G0906 Tripterygium wilfordii HOM05D006436 ORTHO05D008011 1.6e-49 199.9 177 71.8
BraA03t11880Z Brassica rapa HOM05D006436 ORTHO05D008011 2.8e-49 199.1 176 57.4
Sp1g30670 Schrenkiella parvula HOM05D006436 ORTHO05D008011 4.8e-49 198.4 176 76.7
Lsat_1_v5_gn_5_79100 Lactuca sativa HOM05D006436 ORTHO05D008011 6.2e-49 198.0 174 78.7
AL7G45650 Arabidopsis lyrata HOM05D006436 ORTHO05D008011 1.1e-48 197.2 179 76.0
C03p31970 Brassica napus HOM05D006436 ORTHO05D008011 1.1e-48 197.2 176 56.8
BolC3t15539H Brassica oleracea HOM05D006436 ORTHO05D008011 1.1e-48 197.2 176 56.8
ATR0706G244 Amborella trichopoda HOM05D006436 ORTHO05D008011 1.8e-48 196.4 174 77.0
Os11g0546200 Oryza sativa ssp. japonica HOM05D006436 ORTHO05D008011 2.4e-48 196.1 175 74.9
vmacro01486 Vaccinium macrocarpon HOM05D006436 ORTHO05D008011 2.4e-48 196.1 174 78.7
HPP92_004857 Vanilla planifolia HOM05D006436 ORTHO05D008011 3.1e-48 195.7 174 78.7
BcaB03g13643 Brassica carinata HOM05D006436 ORTHO05D008011 4.0e-48 195.3 176 75.6
CANSAT80G1957 Cannabis sativa HOM05D006436 ORTHO05D008011 4.0e-48 195.3 174 78.2
Dinv19074 Davidia involucrata HOM05D006436 ORTHO05D008011 9.0e-48 194.1 175 76.6
Oeu039710.1 Olea europaea HOM05D006436 ORTHO05D008011 9.0e-48 194.1 175 77.1
BcaC01g04932 Brassica carinata HOM05D006436 ORTHO05D008011 3.4e-47 192.2 175 75.4
Zm00001eb188680 Zea mays HOM05D006436 ORTHO05D008011 3.4e-47 192.2 174 77.0
Sabra16G0133900 Salix brachista HOM05D006436 ORTHO05D008011 1.7e-46 189.9 250 44.4
Sc15g0000210 Simmondsia chinensis HOM05D006436 ORTHO05D008011 1.1e-45 187.2 179 55.3
FvH4_5g26310 Fragaria vesca HOM05D006436 ORTHO05D008011 1.4e-45 186.8 179 54.7
MSTRG.12143 Avicennia marina HOM05D006436 ORTHO05D008011 2.1e-44 183.0 175 74.9
COL.COLO4_18608 Corchorus olitorius HOM05D006436 ORTHO05D008011 3.5e-44 182.2 170 74.1
PSO063G3804 Papaver somniferum HOM05D006436 ORTHO05D008011 3.5e-44 182.2 176 73.3
Migut.A01047 Erythranthe guttata HOM05D006436 ORTHO05D008011 7.9e-44 181.0 175 73.1
SGA_v2.0_scaffold24G10269 Striga asiatica HOM05D006436 ORTHO05D008011 3.0e-43 179.1 204 61.8
unitig_61.g26181 Utricularia gibba HOM05D006436 ORTHO05D008011 5.1e-43 178.3 192 50.0
Hund24464 Selenicereus undatus HOM05D006436 ORTHO05D008011 3.3e-42 175.6 175 52.0
SMO347G0032 Selaginella moellendorffii HOM05D006436 ORTHO05D008011 1.6e-41 173.3 176 47.2
Cc00_g04020 Coffea canephora HOM05D006436 ORTHO05D008011 1.2e-39 167.2 173 52.6
SEGI_01802 Sequoiadendron giganteum HOM05D006436 ORTHO05D008011 2.0e-39 166.4 151 50.3
Mapoly0028s0068 Marchantia polymorpha HOM05D006436 ORTHO05D008011 3.4e-39 165.6 176 47.2
PGSC0003DMG400023565 Solanum tuberosum HOM05D006436 ORTHO05D008011 4.5e-39 165.2 174 51.7
DCAR_006063 Daucus carota HOM05D006436 ORTHO05D008011 1.3e-38 163.7 138 84.1
FAN13G2473 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.3e-38 163.7 173 50.9
Aa31LG5G11620 Aethionema arabicum HOM05D006436 ORTHO05D008011 8.4e-38 161.0 195 64.6
ClCG01G008580 Citrullus lanatus HOM05D006436 ORTHO05D008011 1.4e-37 160.2 139 84.9
SalBow6G7138 Salvia bowleyana HOM05D006436 ORTHO05D008011 4.2e-37 158.7 175 68.6
Dinv28234 Davidia involucrata HOM05D006436 ORTHO05D008011 9.3e-37 157.5 145 77.2
Duzib168G0581 Durio zibethinus HOM05D006436 ORTHO05D008011 9.3e-37 157.5 91 81.3
CDE11G1230 Ceratophyllum demersum HOM05D006436 ORTHO05D008011 1.8e-35 153.3 138 71.0
EL10Ac5g11211 Beta vulgaris HOM05D006436 ORTHO05D008011 4.3e-34 148.7 179 63.7
Nitab4.5_0000574g0240 Nicotiana tabacum HOM05D006436 ORTHO05D008011 7.4e-34 147.9 84 79.8
arahy.Tifrunner.gnm1.ann1.8KE236 Arachis hypogaea HOM05D006436 ORTHO05D008011 1.6e-33 146.7 217 42.9
Nitab4.5_0012165g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 3.7e-33 145.6 138 78.3
CSS0035006 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 1.4e-32 143.7 123 78.9
AUR62026125 Chenopodium quinoa HOM05D003339 ORTHO05D003847 5.3e-32 141.7 166 68.1
Ah.14g085550 Amaranthus hybridus HOM05D000477 ORTHO05D000338 1.2e-31 140.6 90 75.6
AUR62026126 Chenopodium quinoa HOM05D006436 ORTHO05D008011 2.0e-31 139.8 166 67.5
AUR62028451 Chenopodium quinoa HOM05D003339 ORTHO05D003847 2.6e-31 139.4 153 72.5
AUR62028452 Chenopodium quinoa HOM05D006436 ORTHO05D008011 8.5e-30 134.4 166 67.5
Haze_14313 Corylus avellana HOM05D006436 ORTHO05D008011 4.6e-28 128.6 119 54.6
Thhalv10028339m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 5.1e-27 125.2 122 53.3
AagrBONN_evm.TU.Sc2ySwM_368.3316 Anthoceros agrestis HOM05D006436 ORTHO05D008011 1.5e-26 123.6 89 61.8
Nn4g25693 Nelumbo nucifera HOM05D006436 ORTHO05D008011 1.1e-24 117.5 116 51.7
CSS0025543 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 1.1e-21 107.5 171 40.9
CBR_g12236 Chara braunii HOM05D006436 ORTHO05D008011 3.9e-19 99.0 114 43.0
Thecc.05G304200 Theobroma cacao HOM05D006436 ORTHO05D008011 3.8e-14 82.4 99 43.4
CsaV3_1G031100 Cucumis sativus L. HOM05D006436 ORTHO05D008011 1.4e-11 73.9 49 71.4
Nitab4.5_0011078g0020 Nicotiana tabacum HOM05D006436 ORTHO05D008011 7.0e-08 61.6 36 77.8
QL03p022571 Quercus lobata HOM05D006436 ORTHO05D008011 5.9e-07 58.5 36 69.4
CAN.G935.5 Capsicum annuum HOM05D006436 ORTHO05D008011 1.0e-06 57.8 36 75.0
Haze_10727 Corylus avellana HOM05D006436 ORTHO05D008011 1.7e-06 57.0 32 71.9
Nitab4.5_0011078g0030 Nicotiana tabacum HOM05D006436 ORTHO05D008011 2.9e-06 56.2 36 69.4


User provided reference genes

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