Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_18345_v3 Cicer arietinum L. HOM05D005104 ORTHO05D006614 4.0e-145 518.1 265 100.0
Psat7g098720 Pisum sativum HOM05D005104 ORTHO05D006614 1.8e-105 386.3 268 80.2
Medtr4g094252 Medicago truncatula HOM05D005104 ORTHO05D006614 2.0e-99 366.3 268 75.4
TPR.G10460 Trifolium pratense HOM05D005104 ORTHO05D006614 1.6e-93 346.7 233 80.7
VMungo0251G0802 Vigna mungo HOM05D005104 ORTHO05D006614 4.4e-91 338.6 270 71.1
arahy.Tifrunner.gnm1.ann1.V9NXIE Arachis hypogaea HOM05D005104 ORTHO05D006614 1.2e-88 330.5 271 71.2
Phvul.002G208000 Phaseolus vulgaris HOM05D005104 ORTHO05D006614 2.0e-88 329.7 269 69.9
Lj4g0020611 Lotus japonicus HOM05D005104 ORTHO05D006614 2.8e-85 319.3 268 67.5
arahy.Tifrunner.gnm1.ann1.PH7E5N Arachis hypogaea HOM05D005104 ORTHO05D006614 6.1e-85 318.2 271 69.0
Glyma.08G073500 Glycine max HOM05D005104 ORTHO05D006614 1.3e-82 310.5 272 67.6
Glyma.05G118400 Glycine max HOM05D005104 ORTHO05D006614 4.1e-81 305.4 271 67.9
Lalb_Chr10g0097741 Lupinus albus HOM05D005104 ORTHO05D006614 1.9e-78 296.6 270 65.6
Manes.14G166400 Manihot esculenta HOM05D005104 ORTHO05D006614 2.5e-70 269.6 271 62.0
Duzib248G0158 Durio zibethinus HOM05D005104 ORTHO05D006614 4.3e-70 268.9 270 60.4
Haze_10684 Corylus avellana HOM05D005104 ORTHO05D006614 1.2e-69 267.3 267 61.0
CiPaw.05G036500 Carya illinoinensis HOM05D005104 ORTHO05D006614 3.6e-69 265.8 271 60.5
Eucgr.I02668 Eucalyptus grandis HOM05D005104 ORTHO05D006614 3.6e-69 265.8 265 58.5
Gohir.A04G113100 Gossypium hirsutum HOM05D005104 ORTHO05D006614 2.6e-67 259.6 274 60.2
COL.COLO4_20953 Corchorus olitorius HOM05D005104 ORTHO05D006614 1.7e-66 256.9 272 57.7
CsaV3_7G006430 Cucumis sativus L. HOM05D005104 ORTHO05D006614 3.7e-66 255.8 275 57.5
Cfa005608 Carpinus fangiana HOM05D005104 ORTHO05D006614 8.3e-66 254.6 271 60.1
MELO3C018651.2 Cucumis melo HOM05D005104 ORTHO05D006614 1.1e-65 254.2 270 58.5
PGR142G2776 Punica granatum HOM05D005104 ORTHO05D006614 2.4e-65 253.1 267 58.1
Sed0008592 Sechium edule HOM05D005104 ORTHO05D006614 4.1e-65 252.3 268 57.8
CANSAT11G2657 Cannabis sativa HOM05D005104 ORTHO05D006614 1.2e-64 250.8 285 56.1
Gohir.D04G154400 Gossypium hirsutum HOM05D005104 ORTHO05D006614 4.6e-64 248.8 272 58.5
Gorai.012G141700 Gossypium raimondii HOM05D005104 ORTHO05D006614 4.6e-64 248.8 272 58.5
TAR628G1132 Trochodendron aralioides HOM05D005104 ORTHO05D006614 2.3e-63 246.5 274 56.6
Gohir.A04G112960 Gossypium hirsutum HOM05D005104 ORTHO05D006614 3.9e-63 245.7 226 64.6
Dinv24198 Davidia involucrata HOM05D005104 ORTHO05D006614 5.1e-63 245.4 278 57.6
Atru.chr6.1109 Acer truncatum HOM05D005104 ORTHO05D006614 3.3e-62 242.7 266 59.4
Thecc.02G140100 Theobroma cacao HOM05D005104 ORTHO05D006614 4.3e-62 242.3 272 56.6
ClCG09G015340 Citrullus lanatus HOM05D005104 ORTHO05D006614 7.3e-62 241.5 292 53.8
Atru.chr6.1089 Acer truncatum HOM05D005104 ORTHO05D006614 9.5e-62 241.1 266 59.0
GSVIVG01003083001 Vitis vinifera HOM05D005104 ORTHO05D006614 1.6e-61 240.4 277 56.3
Actinidia28058 Actinidia chinensis HOM05D005104 ORTHO05D006614 6.2e-61 238.4 282 56.7
Prupe.8G062400 Prunus persica HOM05D005104 ORTHO05D006614 1.1e-60 237.7 272 55.5
Migut.N01063 Erythranthe guttata HOM05D005104 ORTHO05D006614 2.0e-59 233.4 268 55.6
MSTRG.27791 Avicennia marina HOM05D005104 ORTHO05D006614 1.7e-58 230.3 269 52.4
QL11p020542 Quercus lobata HOM05D005104 ORTHO05D006614 2.2e-58 229.9 295 53.9
MD10G1051500 Malus domestica HOM05D005104 ORTHO05D006614 6.4e-58 228.4 270 55.9
RcHm_v2.0_Chr6g0273461 Rosa chinensis HOM05D005104 ORTHO05D006614 8.4e-58 228.0 269 55.0
DCAR_001791 Daucus carota HOM05D005104 ORTHO05D006614 1.1e-57 227.6 274 54.0
FAN27G3119 Fragaria x ananassa HOM05D005104 ORTHO05D006614 2.4e-57 226.5 268 55.6
Cpa.g.sc42.74 Carica papaya HOM05D005104 ORTHO05D006614 3.2e-57 226.1 280 54.6
Ciclev10029197m.g Citrus clementina HOM05D005104 ORTHO05D006614 3.2e-57 226.1 266 55.6
Oeu007957.1 Olea europaea HOM05D005104 ORTHO05D006614 1.6e-56 223.8 275 53.5
SalBow6G6009 Salvia bowleyana HOM05D005104 ORTHO05D006614 2.1e-56 223.4 269 52.8
SalBow6G6298 Salvia bowleyana HOM05D005104 ORTHO05D006614 2.7e-56 223.0 271 53.9
Hma1.2p1_0522F.1_g171600 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 4.6e-56 222.2 227 60.4
FvH4_2g12710 Fragaria vesca HOM05D005104 ORTHO05D006614 7.8e-56 221.5 271 54.2
SGA_v2.0_scaffold45G17311 Striga asiatica HOM05D005104 ORTHO05D006614 7.8e-56 221.5 273 52.4
Nn1g05321 Nelumbo nucifera HOM05D005104 ORTHO05D006614 2.3e-55 219.9 274 52.6
Thhalv10004872m.g Eutrema salsugineum HOM05D005104 ORTHO05D006614 1.1e-54 217.6 269 54.3
TWI59G0245 Tripterygium wilfordii HOM05D005104 ORTHO05D006614 1.1e-54 217.6 271 53.5
CSS0037720 Camellia sinensis var. sinensis HOM05D005104 ORTHO05D006614 7.3e-54 214.9 277 53.4
HanXRQChr10g0295831 Helianthus annuus HOM05D005104 ORTHO05D006614 7.3e-54 214.9 274 53.6
Sabra01G0157800 Salix brachista HOM05D005104 ORTHO05D006614 1.6e-53 213.8 288 52.1
Sp2g27220 Schrenkiella parvula HOM05D005104 ORTHO05D006614 1.6e-53 213.8 269 53.5
Aqoxy6G00597 Aquilegia oxysepala HOM05D005104 ORTHO05D006614 3.6e-53 212.6 280 52.5
PSO781G0266 Papaver somniferum HOM05D005104 ORTHO05D006614 4.8e-53 212.2 277 50.9
FAN20G1981 Fragaria x ananassa HOM05D005104 ORTHO05D006614 8.1e-53 211.5 271 52.8
ATR0564G397 Amborella trichopoda HOM05D005104 ORTHO05D006614 1.1e-52 211.1 272 54.8
CDE10G0587 Ceratophyllum demersum HOM05D005104 ORTHO05D006614 1.1e-52 211.1 275 49.8
BcaB07g29727 Brassica carinata HOM05D005104 ORTHO05D006614 1.8e-52 210.3 268 52.2
PGSC0003DMG400017693 Solanum tuberosum HOM05D005104 ORTHO05D006614 2.4e-52 209.9 274 50.7
Sopen10g017460 Solanum pennellii HOM05D005104 ORTHO05D006614 4.0e-52 209.1 273 50.2
Potri.003G023601 Populus trichocarpa HOM05D005104 ORTHO05D006614 6.9e-52 208.4 283 50.9
AT5G64160 Arabidopsis thaliana HOM05D005104 ORTHO05D006614 1.5e-51 207.2 268 52.2
AL8G41430 Arabidopsis lyrata HOM05D005104 ORTHO05D006614 4.4e-51 205.7 268 51.9
Carub.0008s2495 Capsella rubella HOM05D005104 ORTHO05D006614 7.6e-51 204.9 270 52.2
BcaB02g09781 Brassica carinata HOM05D005104 ORTHO05D006614 1.3e-50 204.1 269 52.4
PSO541G4381 Papaver somniferum HOM05D005104 ORTHO05D006614 2.2e-50 203.4 277 49.5
vmacro19925 Vaccinium macrocarpon HOM05D005104 ORTHO05D006614 2.9e-50 203.0 325 47.1
CARHR278070 Cardamine hirsuta HOM05D005104 ORTHO05D006614 6.4e-50 201.8 269 52.8
BcaC02g09479 Brassica carinata HOM05D002012 ORTHO05D001992 1.1e-49 201.1 207 58.9
A06p30880 Brassica napus HOM05D005104 ORTHO05D006614 5.4e-49 198.7 268 51.9
BcaC01g02673 Brassica carinata HOM05D005104 ORTHO05D006614 7.1e-49 198.4 268 51.1
Solyc10g047220.2 Solanum lycopersicum HOM05D005104 ORTHO05D006614 7.1e-49 198.4 270 49.3
ECA234G0341 Erigeron canadensis HOM05D005104 ORTHO05D006614 1.2e-48 197.6 223 55.6
Lsat_1_v5_gn_5_107140 Lactuca sativa HOM05D005104 ORTHO05D006614 1.2e-48 197.6 272 51.8
BolC3t18470H Brassica oleracea HOM05D005104 ORTHO05D006614 2.1e-48 196.8 268 51.1
Rhsim05G0108500 Rhododendron simsii HOM05D005104 ORTHO05D006614 2.1e-48 196.8 207 58.9
C03p62090 Brassica napus HOM05D005104 ORTHO05D006614 2.7e-48 196.4 268 51.1
SEGI_35517 Sequoiadendron giganteum HOM05D005104 ORTHO05D006614 7.8e-48 194.9 280 48.6
HPP92_006000 Vanilla planifolia HOM05D005104 ORTHO05D006614 7.8e-48 194.9 272 50.4
Peaxi162Scf00003g03543 Petunia axillaris HOM05D005104 ORTHO05D006614 3.9e-47 192.6 270 50.0
Cc02_g21630 Coffea canephora HOM05D005104 ORTHO05D006614 7.3e-46 188.3 265 50.9
C09p58340 Brassica napus HOM05D005104 ORTHO05D006614 1.6e-45 187.2 253 51.4
Aa31LG1G17770 Aethionema arabicum HOM05D005104 ORTHO05D006614 2.1e-45 186.8 285 49.1
BolC9t58698H Brassica oleracea HOM05D005104 ORTHO05D006614 2.8e-45 186.4 254 50.8
C09p58390 Brassica napus HOM05D005104 ORTHO05D006614 4.8e-45 185.7 250 51.2
Oeu026158.1 Olea europaea HOM05D005104 ORTHO05D006614 2.4e-44 183.3 269 47.2
C06p26800 Brassica napus HOM05D005104 ORTHO05D006614 6.9e-44 181.8 255 50.2
Os02g0753200 Oryza sativa ssp. japonica HOM05D005104 ORTHO05D006614 9.0e-44 181.4 207 56.5
BolC6t37855H Brassica oleracea HOM05D005104 ORTHO05D006614 7.6e-43 178.3 253 49.4
Hund06391 Selenicereus undatus HOM05D005104 ORTHO05D006614 1.3e-42 177.6 271 47.2
C02p46090 Brassica napus HOM05D005104 ORTHO05D006614 3.8e-42 176.0 261 47.1
FAN24G3378 Fragaria x ananassa HOM05D005104 ORTHO05D006614 3.8e-42 176.0 156 65.4
BcaC08g45071 Brassica carinata HOM05D005104 ORTHO05D006614 1.4e-41 174.1 260 48.1
Hma1.2p1_0522F.1_g171590 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 3.2e-41 172.9 238 50.0
GSVIVG01013334001 Vitis vinifera HOM05D005104 ORTHO05D006614 3.5e-40 169.5 161 63.4
GSVIVG01003087001 Vitis vinifera HOM05D005104 ORTHO05D006614 1.0e-39 167.9 161 62.7
AUR62010117 Chenopodium quinoa HOM05D005104 ORTHO05D006614 5.1e-39 165.6 273 45.4
BraA03t13815Z Brassica rapa HOM05D005104 ORTHO05D006614 6.7e-39 165.2 243 46.9
AUR62013112 Chenopodium quinoa HOM05D005104 ORTHO05D006614 6.7e-39 165.2 273 45.4
Lj5A240T40 Lonicera japonica HOM05D005104 ORTHO05D006614 8.7e-39 164.9 159 64.2
MBI02_g08741_MAGBIO Magnolia biondii HOM05D005104 ORTHO05D006614 8.7e-39 164.9 158 62.7
Ah.01g009520 Amaranthus hybridus HOM05D005104 ORTHO05D006614 2.5e-38 163.3 268 45.5
Zm00001eb255190 Zea mays HOM05D005104 ORTHO05D006614 1.8e-36 157.1 276 44.9
Zm00001eb194200 Zea mays HOM05D005104 ORTHO05D006614 1.2e-35 154.5 284 42.3
Mapoly0096s0033 Marchantia polymorpha HOM05D005104 ORTHO05D006614 3.2e-33 146.4 285 40.7
Pp3c18_21190 Physcomitrium patens HOM05D005104 ORTHO05D006614 4.2e-33 146.0 272 39.7
unitig_22.g6836 Utricularia gibba HOM05D001058 ORTHO05D000911 6.0e-32 142.1 242 44.2
GSVIVG01003093001 Vitis vinifera HOM05D005104 ORTHO05D006614 7.9e-32 141.7 144 60.4
Nitab4.5_0000078g0030 Nicotiana tabacum HOM05D005104 ORTHO05D006614 8.2e-29 131.7 278 40.6
Sc08g0003350 Simmondsia chinensis HOM05D005104 ORTHO05D006614 1.1e-28 131.3 200 46.0
AagrBONN_evm.TU.Sc2ySwM_117.984 Anthoceros agrestis HOM05D005104 ORTHO05D006614 9.0e-28 128.3 272 39.3
SMO117G0229 Selaginella moellendorffii HOM05D005104 ORTHO05D006614 9.3e-25 118.2 207 44.0
CAN.G1.36 Capsicum annuum HOM05D005104 ORTHO05D006614 2.7e-24 116.7 174 48.9
THA.LOC104818435 Tarenaya hassleriana HOM05D005104 ORTHO05D006614 1.3e-23 114.4 171 46.8
BolC4t25904H Brassica oleracea HOM05D005104 ORTHO05D006614 5.1e-23 112.5 69 82.6
CDE10G1356 Ceratophyllum demersum HOM05D005104 ORTHO05D006614 5.1e-23 112.5 197 42.1
Nitab4.5_0005015g0050 Nicotiana tabacum HOM05D005104 ORTHO05D006614 1.8e-20 104.0 159 46.5
EL10Ac9g21466 Beta vulgaris HOM05D005104 ORTHO05D006614 1.0e-18 98.2 69 76.8
Duzib132G1169 Durio zibethinus HOM05D005104 ORTHO05D006614 7.2e-17 92.0 137 48.9
arahy.Tifrunner.gnm1.ann1.H2YG1F Arachis hypogaea HOM05D005104 ORTHO05D006614 9.7e-14 81.6 75 64.0
CBR_g47116 Chara braunii HOM05D005104 ORTHO05D006614 6.9e-12 75.5 235 31.9
A02p26040 Brassica napus HOM05D005104 ORTHO05D006614 2.6e-11 73.6 99 50.5
Hma1.2p1_0516F.1_g170490 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 3.8e-10 69.7 131 42.7
Potri.001G206032 Populus trichocarpa HOM05D005104 ORTHO05D006614 8.5e-10 68.6 195 37.4
A10p06060 Brassica napus HOM05D005104 ORTHO05D006614 1.5e-06 57.8 81 48.1
EL10Ac9g21465 Beta vulgaris HOM05D005104 ORTHO05D006614 9.7e-06 55.1 245 29.8


User provided reference genes

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