Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_18335_v3 Cicer arietinum L. HOM05D007421 ORTHO05D009203 3.4e-181 638.3 338 100.0
Psat7g097480 Pisum sativum HOM05D007421 ORTHO05D009203 7.3e-115 417.9 343 70.6
TPR.G10446 Trifolium pratense HOM05D007421 ORTHO05D009203 3.6e-114 415.6 348 71.6
Medtr4g094292 Medicago truncatula HOM05D007421 ORTHO05D009203 1.5e-107 393.7 378 65.9
Lj4g0022412 Lotus japonicus HOM05D007421 ORTHO05D009203 6.4e-95 351.7 344 61.6
Phvul.002G206600 Phaseolus vulgaris HOM05D007421 ORTHO05D009203 5.4e-86 322.0 342 60.5
Glyma.08G075000 Glycine max HOM05D007421 ORTHO05D009203 1.6e-82 310.5 339 54.0
VMungo0251G1640 Vigna mungo HOM05D007421 ORTHO05D009203 3.1e-81 306.2 359 56.8
Glyma.05G120200 Glycine max HOM05D007421 ORTHO05D009203 1.8e-76 290.4 352 55.7
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 4.5e-48 196.1 358 38.0
Sed0000945 Sechium edule HOM05D007421 ORTHO05D009203 1.1e-46 191.4 348 42.5
Dinv24220 Davidia involucrata HOM05D007421 ORTHO05D009203 1.4e-46 191.0 339 38.3
CSS0030012 Camellia sinensis var. sinensis HOM05D007421 ORTHO05D009203 1.8e-44 184.1 352 38.4
CSS0048527 Camellia sinensis var. sinensis HOM05D007421 ORTHO05D009203 1.8e-44 184.1 352 38.1
Nn5g28883 Nelumbo nucifera HOM05D007421 ORTHO05D009203 4.1e-41 172.9 335 38.2
Cfa005578 Carpinus fangiana HOM05D007421 ORTHO05D009203 9.1e-41 171.8 338 38.2
CiPaw.06G151100 Carya illinoinensis HOM05D007421 ORTHO05D009203 1.7e-39 167.5 350 37.4
vmacro01809 Vaccinium macrocarpon HOM05D007421 ORTHO05D009203 5.5e-38 162.5 368 34.8
Manes.11G148500 Manihot esculenta HOM05D007421 ORTHO05D009203 9.4e-38 161.8 314 40.4
Actinidia00249 Actinidia chinensis HOM05D007421 ORTHO05D009203 1.2e-37 161.4 291 38.8
CsaV3_7G012710 Cucumis sativus L. HOM05D007421 ORTHO05D009203 2.1e-37 160.6 266 42.5
TAR628G0675 Trochodendron aralioides HOM05D007421 ORTHO05D009203 3.6e-37 159.8 283 39.6
ClCG09G021300 Citrullus lanatus HOM05D007421 ORTHO05D009203 6.1e-37 159.1 267 39.0
Rhsim11G0134600 Rhododendron simsii HOM05D007421 ORTHO05D009203 5.2e-36 156.0 400 35.2
Nitab4.5_0011639g0020 Nicotiana tabacum HOM05D007421 ORTHO05D009203 1.1e-35 154.8 350 33.4
CAN.G1034.36 Capsicum annuum HOM05D007421 ORTHO05D009203 2.6e-35 153.7 303 36.6
Solyc10g047040.3 Solanum lycopersicum HOM05D007421 ORTHO05D009203 6.3e-34 149.1 361 33.5
Sopen10g016990 Solanum pennellii HOM05D007421 ORTHO05D009203 1.4e-33 147.9 361 33.2
Nitab4.5_0000078g0170 Nicotiana tabacum HOM05D007421 ORTHO05D009203 2.4e-33 147.1 350 31.7
PGSC0003DMG400024171 Solanum tuberosum HOM05D007421 ORTHO05D009203 7.0e-33 145.6 359 33.1
Lalb_Chr12g0208501 Lupinus albus HOM05D007421 ORTHO05D009203 1.2e-32 144.8 210 50.0
Haze_10776 Corylus avellana HOM05D007421 ORTHO05D009203 1.7e-31 141.0 357 35.6
TWI59G0537 Tripterygium wilfordii HOM05D007421 ORTHO05D009203 1.7e-31 141.0 320 35.9
Cc02_g21850 Coffea canephora HOM05D007421 ORTHO05D009203 9.4e-30 135.2 372 32.8
Nitab4.5_0004176g0040 Nicotiana tabacum HOM05D007421 ORTHO05D009203 1.2e-29 134.8 351 31.1
Peaxi162Scf00003g03742 Petunia axillaris HOM05D007421 ORTHO05D009203 1.6e-29 134.4 331 32.6
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 2.1e-29 134.0 236 38.6
Sc08g0004770 Simmondsia chinensis HOM05D007421 ORTHO05D009203 2.1e-29 134.0 330 32.1
DCAR_029217 Daucus carota HOM05D007421 ORTHO05D009203 3.6e-29 133.3 277 35.7
Aqoxy5G02013 Aquilegia oxysepala HOM05D007421 ORTHO05D009203 4.7e-29 132.9 304 34.9
VMungo1383G3582 Vigna mungo HOM05D007421 ORTHO05D009203 4.7e-29 132.9 138 56.5
Thecc.02G143500 Theobroma cacao HOM05D007421 ORTHO05D009203 4.0e-28 129.8 283 37.1
Prupe.1G559900 Prunus persica HOM05D007421 ORTHO05D009203 9.7e-27 125.2 290 37.2
QL11p019404 Quercus lobata HOM05D007421 ORTHO05D009203 1.3e-26 124.8 239 41.4
COL.COLO4_20870 Corchorus olitorius HOM05D007321 ORTHO05D009244 2.2e-26 124.0 320 32.8
Potri.005G176900 Populus trichocarpa HOM05D007421 ORTHO05D009203 1.4e-25 121.3 291 34.7
Gohir.A03G171600 Gossypium hirsutum HOM05D007421 ORTHO05D009203 1.8e-25 120.9 284 33.5
Gorai.005G217800 Gossypium raimondii HOM05D007421 ORTHO05D009203 2.4e-25 120.6 284 33.1
Sabra05G0133500 Salix brachista HOM05D007421 ORTHO05D009203 5.3e-25 119.4 321 30.8
Gorai.013G063400 Gossypium raimondii HOM05D007421 ORTHO05D009203 1.7e-23 114.4 233 37.3
Gohir.A13G065600 Gossypium hirsutum HOM05D007421 ORTHO05D009203 2.2e-23 114.0 229 35.8
CDE02G3538 Ceratophyllum demersum HOM05D007421 ORTHO05D009203 5.0e-23 112.8 207 37.2
Atru.chr6.906 Acer truncatum HOM05D007421 ORTHO05D009203 6.5e-23 112.5 262 33.6
Lj9C318G13 Lonicera japonica HOM05D007421 ORTHO05D009203 1.1e-22 111.7 159 44.0
Cpa.g.sc0.12 Carica papaya HOM05D007421 ORTHO05D009203 4.2e-22 109.8 382 29.8
Medtr4g094298 Medicago truncatula HOM05D007421 ORTHO05D009203 5.5e-22 109.4 77 71.4
arahy.Tifrunner.gnm1.ann1.LE3KL9 Arachis hypogaea HOM05D007421 ORTHO05D009203 1.2e-21 108.2 131 51.9
arahy.Tifrunner.gnm1.ann1.VL1QZD Arachis hypogaea HOM05D007421 ORTHO05D009203 1.2e-21 108.2 131 51.9
EL10Ac8g19356 Beta vulgaris HOM05D007421 ORTHO05D009203 1.0e-20 105.1 285 31.6
CANSAT11G0077 Cannabis sativa HOM05D007421 ORTHO05D009203 1.0e-20 105.1 340 32.4
Gohir.D13G056100 Gossypium hirsutum HOM05D007421 ORTHO05D009203 1.2e-19 101.7 178 39.9
DCAR_001801 Daucus carota HOM05D007421 ORTHO05D009203 5.7e-19 99.4 112 59.8
MD08G1222100 Malus domestica HOM05D007421 ORTHO05D009203 5.7e-19 99.4 208 37.5
Ca_02335_v3 Cicer arietinum L. HOM05D007421 ORTHO05D009203 2.8e-18 97.1 89 57.3
Potri.002G084750 Populus trichocarpa HOM05D007421 ORTHO05D009203 2.8e-18 97.1 257 36.2
Ciclev10003479m.g Citrus clementina HOM05D007421 ORTHO05D009203 8.3e-18 95.5 259 37.1
MBI07_g32548_MAGBIO Magnolia biondii HOM05D007421 ORTHO05D009203 1.4e-17 94.7 157 43.9
Oeu000232.1 Olea europaea HOM05D007421 ORTHO05D009203 1.4e-17 94.7 291 28.9
RcHm_v2.0_Chr7g0225501 Rosa chinensis HOM05D007421 ORTHO05D009203 5.4e-17 92.8 222 33.3
Gohir.D02G194950 Gossypium hirsutum HOM05D007421 ORTHO05D009203 3.5e-16 90.1 276 29.3
FvH4_5g30620 Fragaria vesca HOM05D007421 ORTHO05D009203 7.7e-16 89.0 234 30.3
FAN18G4438 Fragaria x ananassa HOM05D007421 ORTHO05D009203 7.7e-16 89.0 234 29.9
ECA236G4083 Erigeron canadensis HOM05D007421 ORTHO05D009203 1.3e-15 88.2 199 33.2
SGA_v2.0_scaffold332G48944 Striga asiatica HOM05D007421 ORTHO05D009203 1.3e-15 88.2 321 28.7
HPP92_013365 Vanilla planifolia HOM05D007421 ORTHO05D009203 1.3e-15 88.2 243 32.1
RcHm_v2.0_Chr5g0049711 Rosa chinensis HOM05D007421 ORTHO05D009203 2.5e-14 84.0 149 38.3
Medtr4g094358 Medicago truncatula HOM05D007421 ORTHO05D009203 2.1e-13 80.9 51 74.5
ATR0753G155 Amborella trichopoda HOM05D007421 ORTHO05D009203 3.6e-13 80.1 122 38.5
MELO3C024933.2 Cucumis melo HOM05D007421 ORTHO05D009203 2.3e-12 77.4 66 60.6
FAN04G0435 Fragaria x ananassa HOM05D007421 ORTHO05D009203 2.3e-12 77.4 239 30.1
Lalb_Chr12g0208511 Lupinus albus HOM05D007421 ORTHO05D009203 2.3e-12 77.4 52 65.4
Eucgr.I02692 Eucalyptus grandis HOM05D007421 ORTHO05D009203 2.6e-11 73.9 257 28.8
RcHm_v2.0_Chr7g0236151 Rosa chinensis HOM05D007421 ORTHO05D009203 3.4e-11 73.6 142 37.3
GSVIVG01022264001 Vitis vinifera HOM05D007421 ORTHO05D009203 3.7e-10 70.1 124 37.9
SEGI_03000 Sequoiadendron giganteum HOM05D007421 ORTHO05D009203 4.1e-09 66.6 116 48.3
ClCG09G021270 Citrullus lanatus HOM05D007421 ORTHO05D009203 5.4e-09 66.2 88 54.5
Ah.09g232060 Amaranthus hybridus HOM05D007421 ORTHO05D009203 2.0e-08 64.3 289 24.9
CBR_g30215 Chara braunii HOM05D002710 ORTHO05D009203 2.0e-08 64.3 34 70.6
MCO11G228 Micromonas commoda HOM05D002710 ORTHO05D002905 3.5e-08 63.5 34 67.6
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 7.8e-08 62.4 33 66.7
SMO198G0058 Selaginella moellendorffii HOM05D002710 ORTHO05D002905 7.8e-08 62.4 33 66.7
FAN08G3106 Fragaria x ananassa HOM05D007421 ORTHO05D009203 1.3e-07 61.6 148 32.4
Pp3c2_17030 Physcomitrium patens HOM05D002710 ORTHO05D002905 3.8e-07 60.1 35 60.0
Pp3c1_21370 Physcomitrium patens HOM05D002710 ORTHO05D002905 5.0e-07 59.7 33 66.7
Cre03.g172800 Chlamydomonas reinhardtii HOM05D002710 ORTHO05D002905 1.5e-06 58.2 32 68.8
SHI16534 Sapria himalayana HOM05D007421 ORTHO05D009203 4.3e-06 56.6 72 41.7
FvH4_5g35251 Fragaria vesca HOM05D007421 ORTHO05D009203 5.6e-06 56.2 116 34.5
PGR142G3672 Punica granatum HOM05D007421 ORTHO05D009203 7.3e-06 55.8 266 27.4


User provided reference genes

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