Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_18332_v3 Cicer arietinum L. HOM05D005972 ORTHO05D007548 9.1e-215 750.0 380 100.0
Psat0s2194g0120 Pisum sativum HOM05D005972 ORTHO05D007548 2.6e-193 678.7 379 88.7
Medtr4g094305 Medicago truncatula HOM05D005972 ORTHO05D007548 2.3e-189 665.6 379 86.0
TPR.G31487 Trifolium pratense HOM05D005972 ORTHO05D007548 1.1e-188 663.3 379 85.2
Lj4g0025997 Lotus japonicus HOM05D005972 ORTHO05D007548 5.2e-186 654.4 379 85.0
Lalb_Chr12g0208521 Lupinus albus HOM05D005972 ORTHO05D007548 6.1e-179 630.9 379 81.0
Glyma.05G120600 Glycine max HOM05D005972 ORTHO05D007548 3.5e-174 615.1 379 80.5
arahy.Tifrunner.gnm1.ann1.41EE5L Arachis hypogaea HOM05D005972 ORTHO05D007548 7.8e-174 614.0 379 78.9
arahy.Tifrunner.gnm1.ann1.UKM804 Arachis hypogaea HOM05D005972 ORTHO05D007548 5.0e-173 611.3 379 78.1
Glyma.08G075400 Glycine max HOM05D005972 ORTHO05D007548 2.1e-171 605.9 379 79.7
VMungo0251G2526 Vigna mungo HOM05D005972 ORTHO05D007548 5.0e-165 584.7 402 72.9
Phvul.002G206200 Phaseolus vulgaris HOM05D005972 ORTHO05D007548 6.6e-157 557.8 379 74.1
Rhsim05G0111400 Rhododendron simsii HOM05D005972 ORTHO05D007548 1.9e-151 539.7 374 70.3
Cfa019136 Carpinus fangiana HOM05D005972 ORTHO05D007548 2.7e-150 535.8 373 69.7
Prupe.1G287600 Prunus persica HOM05D005972 ORTHO05D007548 7.8e-150 534.3 374 70.9
CSS0039579 Camellia sinensis var. sinensis HOM05D005972 ORTHO05D007548 1.1e-148 530.4 375 69.3
Potri.001G222400 Populus trichocarpa HOM05D005972 ORTHO05D007548 1.1e-148 530.4 375 68.8
MD13G1062400 Malus domestica HOM05D005972 ORTHO05D007548 1.5e-148 530.0 373 70.5
Eucgr.H00021 Eucalyptus grandis HOM05D005972 ORTHO05D007548 1.2e-147 526.9 377 67.9
Atru.chr12.548 Acer truncatum HOM05D005972 ORTHO05D007548 3.1e-146 522.3 372 69.9
TWI73G1071 Tripterygium wilfordii HOM05D005972 ORTHO05D007548 1.7e-144 516.5 377 67.1
Lj9A317T77 Lonicera japonica HOM05D005972 ORTHO05D007548 2.2e-144 516.2 373 67.3
RcHm_v2.0_Chr4g0438261 Rosa chinensis HOM05D005972 ORTHO05D007548 4.9e-144 515.0 374 67.4
ClCG05G021510 Citrullus lanatus HOM05D005972 ORTHO05D007548 6.4e-144 514.6 377 66.6
QL04p050517 Quercus lobata HOM05D005972 ORTHO05D007548 6.4e-144 514.6 426 62.0
PGR142G0064 Punica granatum HOM05D005972 ORTHO05D007548 8.4e-144 514.2 372 68.0
Gorai.N007100 Gossypium raimondii HOM05D005972 ORTHO05D007548 1.1e-143 513.8 376 66.2
Thecc.04G023500 Theobroma cacao HOM05D005972 ORTHO05D007548 1.4e-143 513.5 376 66.8
vmacro19910 Vaccinium macrocarpon HOM05D005972 ORTHO05D007548 1.9e-143 513.1 375 68.3
Gohir.A06G170300 Gossypium hirsutum HOM05D005972 ORTHO05D007548 2.4e-143 512.7 376 66.5
Nitab4.5_0000718g0290 Nicotiana tabacum HOM05D005972 ORTHO05D007548 3.2e-143 512.3 373 66.2
CiPaw.11G025800 Carya illinoinensis HOM05D005972 ORTHO05D007548 9.3e-143 510.8 373 67.6
Haze_07503 Corylus avellana HOM05D005972 ORTHO05D007548 9.3e-143 510.8 373 67.6
Gohir.D06G178100 Gossypium hirsutum HOM05D005972 ORTHO05D007548 9.3e-143 510.8 376 66.0
GSVIVG01020853001 Vitis vinifera HOM05D005972 ORTHO05D007548 9.3e-143 510.8 374 66.8
Nitab4.5_0012898g0010 Nicotiana tabacum HOM05D005972 ORTHO05D007548 1.2e-142 510.4 373 66.0
FAN12G3642 Fragaria x ananassa HOM05D005972 ORTHO05D007548 2.7e-142 509.2 374 66.8
Dinv24228 Davidia involucrata HOM05D001691 ORTHO05D007548 4.6e-142 508.4 360 69.7
Duzib106G0263 Durio zibethinus HOM05D005972 ORTHO05D007548 4.6e-142 508.4 373 66.2
Manes.16G061300 Manihot esculenta HOM05D005972 ORTHO05D007548 7.8e-142 507.7 375 66.9
FvH4_4g29980 Fragaria vesca HOM05D005972 ORTHO05D007548 1.3e-141 506.9 374 66.6
Thecc.10G118600 Theobroma cacao HOM05D005972 ORTHO05D007548 1.3e-141 506.9 376 66.5
Actinidia28072 Actinidia chinensis HOM05D005972 ORTHO05D007548 3.9e-141 505.4 374 65.8
FAN07G1127 Fragaria x ananassa HOM05D005972 ORTHO05D007548 3.9e-141 505.4 374 66.0
COL.COLO4_27930 Corchorus olitorius HOM05D005972 ORTHO05D007548 5.1e-141 505.0 378 65.3
FAN22G0246 Fragaria x ananassa HOM05D005972 ORTHO05D007548 1.1e-140 503.8 374 66.3
CAN.G1513.3 Capsicum annuum HOM05D005972 ORTHO05D007548 1.5e-140 503.4 375 65.3
Sed0010539 Sechium edule HOM05D005972 ORTHO05D007548 2.5e-140 502.7 377 65.8
Sopen11g002990 Solanum pennellii HOM05D005972 ORTHO05D007548 7.3e-140 501.1 373 65.1
Solyc11g007070.2 Solanum lycopersicum HOM05D005972 ORTHO05D007548 2.8e-139 499.2 373 64.9
HanXRQChr11g0337671 Helianthus annuus HOM05D005972 ORTHO05D007548 8.1e-139 497.7 372 64.0
Cpa.g.sc36.20 Carica papaya HOM05D005972 ORTHO05D007548 2.4e-138 496.1 375 63.2
CsaV3_5G035730 Cucumis sativus L. HOM05D005972 ORTHO05D007548 6.9e-138 494.6 377 62.9
FAN17G2742 Fragaria x ananassa HOM05D005972 ORTHO05D007548 7.6e-137 491.1 384 64.1
EL10Ac5g12767 Beta vulgaris HOM05D005972 ORTHO05D007548 3.8e-136 488.8 375 64.3
Ciclev10031864m.g Citrus clementina HOM05D005972 ORTHO05D007548 4.9e-136 488.4 372 65.9
Lsat_1_v5_gn_7_80540 Lactuca sativa HOM05D005972 ORTHO05D007548 8.4e-136 487.6 372 63.4
MSTRG.27825 Avicennia marina HOM05D005972 ORTHO05D007548 1.1e-135 487.3 376 64.9
MELO3C012375.2 Cucumis melo HOM05D005972 ORTHO05D007548 1.1e-135 487.3 377 62.6
Oeu017286.1 Olea europaea HOM05D005972 ORTHO05D007548 1.9e-135 486.5 372 65.3
Migut.N01012 Erythranthe guttata HOM05D005972 ORTHO05D007548 1.6e-134 483.4 378 63.8
THA.LOC104808523 Tarenaya hassleriana HOM05D005972 ORTHO05D007548 6.0e-134 481.5 373 61.7
MD16G1060700 Malus domestica HOM05D005972 ORTHO05D007548 1.5e-132 476.9 365 66.0
CANSAT80G0182 Cannabis sativa HOM05D005972 ORTHO05D007548 8.1e-131 471.1 377 62.1
PSO782G4197 Papaver somniferum HOM05D005972 ORTHO05D007548 1.1e-130 470.7 374 61.2
SGA_v2.0_scaffold145G36053 Striga asiatica HOM05D005972 ORTHO05D007548 1.1e-130 470.7 376 62.2
PSO063G2120 Papaver somniferum HOM05D005972 ORTHO05D007548 3.1e-130 469.2 374 61.2
Ah.12g057320 Amaranthus hybridus HOM05D005972 ORTHO05D007548 4.0e-130 468.8 377 60.7
BcaNung00313 Brassica carinata HOM05D005972 ORTHO05D007548 1.6e-126 456.8 374 59.1
Thhalv10025456m.g Eutrema salsugineum HOM05D005972 ORTHO05D007548 6.0e-126 454.9 379 58.6
AT4G15010 Arabidopsis thaliana HOM05D005972 ORTHO05D007548 1.8e-125 453.4 373 58.4
BraA01t02169Z Brassica rapa HOM05D005972 ORTHO05D007548 2.3e-125 453.0 374 59.1
A01p22560 Brassica napus HOM05D005972 ORTHO05D007548 8.7e-125 451.1 374 58.8
C01p28060 Brassica napus HOM05D005972 ORTHO05D007548 8.7e-125 451.1 374 58.6
BcaC09g50180 Brassica carinata HOM05D005972 ORTHO05D007548 1.1e-124 450.7 374 58.8
BolC1t02740H Brassica oleracea HOM05D005972 ORTHO05D007548 1.1e-124 450.7 374 58.8
Aqoxy4G02449 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 1.5e-124 450.3 404 57.4
Sc22g0000350 Simmondsia chinensis HOM05D005972 ORTHO05D007548 1.6e-123 446.8 377 60.2
Carub.0007s2708 Capsella rubella HOM05D005972 ORTHO05D007548 2.1e-123 446.4 373 57.9
AL7G40820 Arabidopsis lyrata HOM05D005972 ORTHO05D007548 2.8e-123 446.0 373 57.1
BcaB02g07844 Brassica carinata HOM05D005972 ORTHO05D007548 3.7e-123 445.7 375 58.7
CARHR221700 Cardamine hirsuta HOM05D005972 ORTHO05D007548 4.8e-123 445.3 375 56.5
CDE04G1870 Ceratophyllum demersum HOM05D005972 ORTHO05D007548 2.6e-121 439.5 376 57.4
Aa31LG9G2330 Aethionema arabicum HOM05D005972 ORTHO05D007548 2.2e-120 436.4 376 57.2
SalBow6G6672 Salvia bowleyana HOM05D005972 ORTHO05D007548 6.5e-120 434.9 421 53.0
ATR0594G009 Amborella trichopoda HOM05D005972 ORTHO05D007548 2.7e-118 429.5 374 57.8
MBI03_g03956_MAGBIO Magnolia biondii HOM05D005972 ORTHO05D007548 9.7e-116 421.0 372 57.5
Nn6g35524 Nelumbo nucifera HOM05D005972 ORTHO05D007548 1.8e-114 416.8 375 56.8
Peaxi162Scf00152g01221 Petunia axillaris HOM05D005972 ORTHO05D007548 1.3e-112 410.6 373 55.5
ATR0174G007 Amborella trichopoda HOM05D005972 ORTHO05D007548 2.9e-112 409.5 380 55.3
DCAR_006139 Daucus carota HOM05D005972 ORTHO05D007548 4.6e-110 402.1 312 64.1
HPP92_021056 Vanilla planifolia HOM05D005972 ORTHO05D007548 7.7e-105 384.8 371 50.1
ECA236G4176 Erigeron canadensis HOM05D005972 ORTHO05D007548 9.7e-100 367.9 267 65.9
Zm00001eb427070 Zea mays HOM05D005972 ORTHO05D007548 3.8e-96 355.9 369 50.7
Sabra16G0132100 Salix brachista HOM05D005972 ORTHO05D007548 1.6e-94 350.5 270 61.9
SEGI_29488 Sequoiadendron giganteum HOM05D005972 ORTHO05D007548 6.1e-94 348.6 373 46.9
unitig_747.g21237 Utricularia gibba HOM05D005972 ORTHO05D007548 1.0e-88 331.3 406 47.5
SHI11404 Sapria himalayana HOM05D005972 ORTHO05D007548 2.6e-84 316.6 276 58.7
Mapoly0188s0014 Marchantia polymorpha HOM05D005972 ORTHO05D007548 1.6e-81 307.4 375 43.2
Cc02_g21900 Coffea canephora HOM05D005972 ORTHO05D007548 6.8e-77 292.0 183 74.3
COL.COLO4_10011 Corchorus olitorius HOM05D005972 ORTHO05D007548 3.1e-74 283.1 265 56.6
Pp3c15_20500 Physcomitrium patens HOM05D005972 ORTHO05D007548 7.5e-68 261.9 374 37.7
Aqoxy3G01225 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 5.2e-45 186.0 176 54.0
C06p16620 Brassica napus HOM05D005972 ORTHO05D007548 2.0e-44 184.1 224 46.4
BolC6t36864H Brassica oleracea HOM05D005972 ORTHO05D007548 2.0e-44 184.1 224 46.4
Sp7g13170 Schrenkiella parvula HOM05D005972 ORTHO05D007548 2.0e-44 184.1 163 54.0
A05p16900 Brassica napus HOM05D005972 ORTHO05D007548 1.4e-42 177.9 139 59.7
Os04g0527500 Oryza sativa ssp. japonica HOM05D005972 ORTHO05D007548 1.2e-41 174.9 121 70.2
SpUn0490_0010 Schrenkiella parvula HOM05D005972 ORTHO05D007548 2.1e-41 174.1 120 65.8
BcaC08g44257 Brassica carinata HOM05D005972 ORTHO05D024007 7.3e-39 165.6 180 49.4
Cc02_g21910 Coffea canephora HOM05D005972 ORTHO05D007548 2.0e-36 157.5 133 59.4
CAN.G730.4 Capsicum annuum HOM05D005972 ORTHO05D007548 4.8e-30 136.3 143 51.7
BraA05t20595Z Brassica rapa HOM05D005972 ORTHO05D007548 2.2e-27 127.5 95 65.3
CAN.G730.17 Capsicum annuum HOM05D005972 ORTHO05D007548 3.2e-26 123.6 107 60.7
HanXRQChr15g0481161 Helianthus annuus HOM05D005972 ORTHO05D007548 1.6e-25 121.3 115 51.3
CBR_g51824 Chara braunii HOM05D005972 ORTHO05D007548 4.0e-21 106.7 350 27.7
CSS0032497 Camellia sinensis var. sinensis HOM05D001087 ORTHO05D007548 1.6e-17 94.7 87 57.5
CAN.G730.12 Capsicum annuum HOM05D005972 ORTHO05D007548 1.8e-13 81.3 50 82.0
CAN.G730.21 Capsicum annuum HOM05D005972 ORTHO05D007548 4.5e-12 76.6 52 75.0
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 1.7e-11 74.7 44 86.4
A05p16910 Brassica napus HOM05D005972 ORTHO05D007548 2.9e-11 73.9 57 61.4
CAN.G1940.2 Capsicum annuum HOM05D005972 ORTHO05D007548 3.2e-10 70.5 49 59.2
COL.COLO4_10012 Corchorus olitorius HOM05D005972 ORTHO05D007548 5.5e-10 69.7 71 53.5
Zm00001eb076720 Zea mays HOM05D005972 ORTHO05D007548 1.6e-09 68.2 62 59.7
arahy.Tifrunner.gnm1.ann1.YJH68W Arachis hypogaea HOM05D005972 ORTHO05D083016 2.1e-09 67.8 48 72.9
arahy.Tifrunner.gnm1.ann1.03MD5J Arachis hypogaea HOM05D000575 ORTHO05D011349 3.5e-09 67.0 46 73.9
arahy.Tifrunner.gnm1.ann1.9A5XZY Arachis hypogaea HOM05D005972 ORTHO05D031493 3.5e-09 67.0 40 85.0
CSS0030864 Camellia sinensis var. sinensis HOM05D000451 ORTHO05D000351 6.0e-09 66.2 78 48.7
Sed0019488 Sechium edule HOM05D001142 ORTHO05D004628 3.0e-08 63.9 256 24.6
HPP92_001618 Vanilla planifolia HOM05D000076 ORTHO05D002916 8.7e-08 62.4 130 33.1
AagrBONN_evm.TU.Sc2ySwM_228.1711 Anthoceros agrestis HOM05D000883 ORTHO05D002942 2.5e-07 60.8 288 22.9
arahy.Tifrunner.gnm1.ann1.5D55UE Arachis hypogaea HOM05D001142 ORTHO05D004628 2.5e-07 60.8 366 22.4
arahy.Tifrunner.gnm1.ann1.5G9G3T Arachis hypogaea HOM05D001142 ORTHO05D004628 2.5e-07 60.8 366 22.4
Peaxi162Scf00015g00448 Petunia axillaris HOM05D001142 ORTHO05D004628 2.5e-07 60.8 370 23.0
arahy.Tifrunner.gnm1.ann1.A2403X Arachis hypogaea HOM05D000406 ORTHO05D008572 3.3e-07 60.5 169 30.8
MELO3C024239.2 Cucumis melo HOM05D001142 ORTHO05D004628 3.3e-07 60.5 120 34.2
Lsat_1_v5_gn_9_5181 Lactuca sativa HOM05D000406 ORTHO05D008572 4.3e-07 60.1 165 29.7
SMO356G0048 Selaginella moellendorffii HOM05D001142 ORTHO05D004628 5.7e-07 59.7 381 22.6
CAN.G730.13 Capsicum annuum HOM05D005972 ORTHO05D007548 1.3e-06 58.5 37 70.3
Gohir.A12G252000 Gossypium hirsutum HOM05D002314 ORTHO05D002538 1.3e-06 58.5 187 28.3
Gohir.D12G253500 Gossypium hirsutum HOM05D002314 ORTHO05D002538 1.3e-06 58.5 187 28.3
Gorai.008G271000 Gossypium raimondii HOM05D002314 ORTHO05D002538 1.3e-06 58.5 187 28.3
Sed0016744 Sechium edule HOM05D001142 ORTHO05D004628 2.1e-06 57.8 127 33.9
GSVIVG01017089001 Vitis vinifera HOM05D001142 ORTHO05D004628 2.8e-06 57.4 378 21.7
Prupe.2G306700 Prunus persica HOM05D002314 ORTHO05D002538 3.7e-06 57.0 184 27.7
Sp5g35870 Schrenkiella parvula HOM05D001142 ORTHO05D004628 3.7e-06 57.0 285 22.8
vmacro16956 Vaccinium macrocarpon HOM05D001142 ORTHO05D004628 3.7e-06 57.0 366 23.2
BcaC08g47559 Brassica carinata HOM05D001142 ORTHO05D004628 4.8e-06 56.6 281 23.8
COL.COLO4_29892 Corchorus olitorius HOM05D005972 ORTHO05D007548 4.8e-06 56.6 52 51.9
Thecc.03G192300 Theobroma cacao HOM05D002314 ORTHO05D002538 4.8e-06 56.6 187 27.8
Ca_10378_v3 Cicer arietinum L. HOM05D000406 ORTHO05D008572 6.2e-06 56.2 136 32.4
Ca_29656_v3 Cicer arietinum L. HOM05D000406 ORTHO05D008572 6.2e-06 56.2 136 32.4
PGSC0003DMG400016843 Solanum tuberosum HOM05D000406 ORTHO05D008572 6.2e-06 56.2 172 28.5
AagrBONN_evm.TU.Sc2ySwM_368.2218 Anthoceros agrestis HOM05D000883 ORTHO05D002942 8.2e-06 55.8 288 22.6


User provided reference genes

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