Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_18264_v3 Cicer arietinum L. HOM05D004723 ORTHO05D006176 0.0e+00 1113.6 678 100.0
Psat7g090000 Pisum sativum HOM05D004723 ORTHO05D006176 4.4e-228 795.0 684 75.9
Medtr4g096820 Medicago truncatula HOM05D004723 ORTHO05D006176 3.7e-211 738.8 694 70.9
Lj4g0028127 Lotus japonicus HOM05D004723 ORTHO05D006176 3.5e-201 705.7 679 70.1
Glyma.16G122800 Glycine max HOM05D004723 ORTHO05D006176 2.9e-195 686.0 678 67.6
VMungo0251G3240 Vigna mungo HOM05D004723 ORTHO05D006176 2.4e-194 682.9 681 63.9
Lalb_Chr16g0391491 Lupinus albus HOM05D004723 ORTHO05D006176 1.2e-193 680.6 687 67.5
arahy.Tifrunner.gnm1.ann1.DG5MW5 Arachis hypogaea HOM05D004723 ORTHO05D006176 1.5e-191 673.7 681 63.0
Phvul.003G266400 Phaseolus vulgaris HOM05D004723 ORTHO05D006176 8.9e-189 664.5 681 66.8
arahy.Tifrunner.gnm1.ann1.7VD04T Arachis hypogaea HOM05D004723 ORTHO05D006176 1.1e-186 657.5 669 64.3
Glyma.02G045200 Glycine max HOM05D004723 ORTHO05D006176 1.1e-186 657.5 681 65.3
TPR.G4863 Trifolium pratense HOM05D004723 ORTHO05D006176 2.3e-184 649.8 532 75.6
Gorai.012G044400 Gossypium raimondii HOM05D004723 ORTHO05D006176 1.4e-157 560.8 682 58.1
GSVIVG01007226001 Vitis vinifera HOM05D004723 ORTHO05D006176 2.0e-156 557.0 657 55.7
Atru.chr3.886 Acer truncatum HOM05D004723 ORTHO05D006176 2.1e-153 547.0 675 55.9
Atru.chr3.897 Acer truncatum HOM05D004723 ORTHO05D006176 2.1e-153 547.0 675 55.9
Lj4A224T28 Lonicera japonica HOM05D004723 ORTHO05D006176 1.5e-151 540.8 694 56.5
Gohir.A05G376600 Gossypium hirsutum HOM05D004723 ORTHO05D006176 4.3e-151 539.3 682 58.1
TWI09G0244 Tripterygium wilfordii HOM05D004723 ORTHO05D006176 9.7e-151 538.1 674 57.4
Haze_03712 Corylus avellana HOM05D004723 ORTHO05D006176 6.3e-150 535.4 670 54.8
QL06p051414 Quercus lobata HOM05D004723 ORTHO05D006176 9.1e-149 531.6 684 59.5
Nn5g30820 Nelumbo nucifera HOM05D004723 ORTHO05D006176 2.0e-148 530.4 676 54.0
Sed0008382 Sechium edule HOM05D004723 ORTHO05D006176 3.4e-148 529.6 679 57.0
CiPaw.07G062200 Carya illinoinensis HOM05D004723 ORTHO05D006176 5.9e-148 528.9 680 55.4
Cfa007019 Carpinus fangiana HOM05D004723 ORTHO05D006176 8.5e-147 525.0 669 54.1
Eucgr.I02314 Eucalyptus grandis HOM05D004723 ORTHO05D006176 1.1e-146 524.6 682 51.0
Potri.005G108800 Populus trichocarpa HOM05D004723 ORTHO05D006176 2.7e-145 520.0 687 57.9
Cc07_g11220 Coffea canephora HOM05D004723 ORTHO05D006176 6.1e-145 518.8 666 52.4
Sabra05G0089200 Salix brachista HOM05D004723 ORTHO05D006176 1.5e-143 514.2 699 55.7
Manes.10G142700 Manihot esculenta HOM05D004723 ORTHO05D006176 9.7e-143 511.5 693 50.5
Ciclev10025027m.g Citrus clementina HOM05D004723 ORTHO05D006176 2.8e-142 510.0 659 58.4
Medtr4g073330 Medicago truncatula HOM05D004723 ORTHO05D006176 4.8e-142 509.2 683 54.0
MSTRG.10980 Avicennia marina HOM05D004723 ORTHO05D006176 1.1e-141 508.1 665 51.9
Duzib147G1420 Durio zibethinus HOM05D004723 ORTHO05D006176 1.7e-139 500.7 681 53.2
Thecc.08G139800 Theobroma cacao HOM05D004723 ORTHO05D006176 2.2e-139 500.4 680 55.9
Peaxi162Scf00198g00136 Petunia axillaris HOM05D004723 ORTHO05D006176 6.5e-139 498.8 683 58.3
Prupe.7G173800 Prunus persica HOM05D004723 ORTHO05D006176 6.5e-139 498.8 676 55.5
ClCG05G000690 Citrullus lanatus HOM05D004723 ORTHO05D006176 1.1e-138 498.0 679 49.2
Nitab4.5_0001789g0050 Nicotiana tabacum HOM05D004723 ORTHO05D006176 5.5e-138 495.7 696 56.6
Sc07g0001170 Simmondsia chinensis HOM05D004723 ORTHO05D006176 1.0e-136 491.5 676 54.1
PGSC0003DMG400003588 Solanum tuberosum HOM05D004723 ORTHO05D006176 1.4e-136 491.1 697 55.7
MELO3C006009.2 Cucumis melo HOM05D004723 ORTHO05D006176 8.8e-136 488.4 686 50.1
Solyc02g083470.3 Solanum lycopersicum HOM05D004723 ORTHO05D006176 8.8e-136 488.4 709 54.6
Nitab4.5_0006899g0060 Nicotiana tabacum HOM05D004723 ORTHO05D006176 2.0e-135 487.3 715 51.3
ECA232G2222 Erigeron canadensis HOM05D004723 ORTHO05D006176 1.7e-134 484.2 676 50.6
DCAR_024713 Daucus carota HOM05D004723 ORTHO05D006176 2.8e-134 483.4 725 52.0
Sopen02g028260 Solanum pennellii HOM05D004723 ORTHO05D006176 4.8e-134 482.6 706 55.4
CSS0036730 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 7.0e-133 478.8 673 50.2
CsaV3_3G007910 Cucumis sativus L. HOM05D004723 ORTHO05D006176 5.9e-132 475.7 690 51.0
HanXRQChr09g0257321 Helianthus annuus HOM05D004723 ORTHO05D006176 3.8e-131 473.0 680 50.1
TAR628G1348 Trochodendron aralioides HOM05D004723 ORTHO05D006176 3.8e-131 473.0 619 55.3
CAN.G890.41 Capsicum annuum HOM05D004723 ORTHO05D006176 1.5e-130 471.1 543 54.7
CSS0012813 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 2.1e-129 467.2 691 49.8
MD02G1124600 Malus domestica HOM05D004723 ORTHO05D006176 2.7e-129 466.8 618 56.1
Gohir.1Z049326 Gossypium hirsutum HOM05D004723 ORTHO05D006176 1.0e-128 464.9 682 52.1
Actinidia35669 Actinidia chinensis HOM05D004723 ORTHO05D006176 1.8e-128 464.2 677 53.0
Lsat_1_v5_gn_4_144101 Lactuca sativa HOM05D004723 ORTHO05D006176 8.8e-128 461.8 691 53.8
PGR119G2074 Punica granatum HOM05D004723 ORTHO05D006176 8.8e-128 461.8 688 54.7
Cpa.g.sc6.304 Carica papaya HOM05D004723 ORTHO05D006176 2.4e-125 453.8 653 55.4
Migut.F01827 Erythranthe guttata HOM05D004723 ORTHO05D006176 1.6e-124 451.1 545 52.5
PSO675G8954 Papaver somniferum HOM05D004723 ORTHO05D006176 1.3e-123 448.0 690 50.6
PSO541G1155 Papaver somniferum HOM05D004723 ORTHO05D006176 5.5e-122 442.6 697 51.1
CANSAT25G3056 Cannabis sativa HOM05D004723 ORTHO05D006176 1.0e-120 438.3 685 50.8
Hund14070 Selenicereus undatus HOM05D004723 ORTHO05D006176 9.8e-119 431.8 628 52.1
AT3G01160 Arabidopsis thaliana HOM05D004723 ORTHO05D006176 1.3e-118 431.4 673 50.1
FvH4_1g11200 Fragaria vesca HOM05D004723 ORTHO05D006176 1.7e-118 431.0 688 53.1
FAN19G1371 Fragaria x ananassa HOM05D004723 ORTHO05D006176 4.8e-118 429.5 688 52.8
FAN26G3228 Fragaria x ananassa HOM05D004723 ORTHO05D006176 8.3e-118 428.7 691 49.3
RcHm_v2.0_Chr2g0098611 Rosa chinensis HOM05D004723 ORTHO05D006176 1.1e-117 428.3 705 50.4
EL10Ac6g15170 Beta vulgaris HOM05D004723 ORTHO05D006176 2.5e-114 417.2 692 48.0
Sp3g00960 Schrenkiella parvula HOM05D004723 ORTHO05D006176 2.5e-114 417.2 685 50.2
SGA_v2.0_scaffold111G31425 Striga asiatica HOM05D004723 ORTHO05D006176 2.5e-114 417.2 564 52.7
ATR0665G361 Amborella trichopoda HOM05D004723 ORTHO05D006176 2.1e-113 414.1 531 54.2
Aqoxy6G02087 Aquilegia oxysepala HOM05D004723 ORTHO05D006176 2.1e-113 414.1 738 48.2
AL3G11100 Arabidopsis lyrata HOM05D004723 ORTHO05D006176 1.5e-111 407.9 630 52.4
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 3.4e-111 406.8 679 46.7
AUR62003701 Chenopodium quinoa HOM05D004723 ORTHO05D006176 2.4e-109 400.6 691 50.1
Rhsim08G0030800 Rhododendron simsii HOM05D004723 ORTHO05D006176 2.4e-109 400.6 575 47.0
FAN23G0842 Fragaria x ananassa HOM05D004723 ORTHO05D006176 2.7e-108 397.1 532 51.1
Oeu005338.2 Olea europaea HOM05D004723 ORTHO05D006176 5.9e-108 396.0 727 48.0
vmacro18436 Vaccinium macrocarpon HOM05D004723 ORTHO05D006176 3.3e-106 390.2 699 47.1
Aa31LG5G12460 Aethionema arabicum HOM05D004723 ORTHO05D006176 1.8e-104 384.4 696 48.4
Thhalv10020182m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 3.0e-104 383.6 673 50.5
AUR62018009 Chenopodium quinoa HOM05D004723 ORTHO05D006176 1.2e-103 381.7 530 50.8
Carub.0003s0100 Capsella rubella HOM05D004723 ORTHO05D006176 4.4e-103 379.8 668 53.6
BraA05t23177Z Brassica rapa HOM05D004723 ORTHO05D006176 2.2e-102 377.5 705 48.7
SEGI_08029 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 1.4e-101 374.8 539 48.8
A05p44800 Brassica napus HOM05D004723 ORTHO05D006176 4.1e-101 373.2 707 48.4
Gohir.1Z049627 Gossypium hirsutum HOM05D004723 ORTHO05D006176 9.2e-101 372.1 434 59.9
CARHR075890 Cardamine hirsuta HOM05D004723 ORTHO05D006176 2.1e-97 360.9 690 49.3
Ah.01g003790 Amaranthus hybridus HOM05D004723 ORTHO05D006176 6.2e-97 359.4 678 49.6
C09p75390 Brassica napus HOM05D004723 ORTHO05D006176 6.2e-97 359.4 694 49.7
BcaC05g30387 Brassica carinata HOM05D004723 ORTHO05D006176 1.4e-96 358.2 696 50.0
BcaC05g30489 Brassica carinata HOM05D004723 ORTHO05D006176 3.1e-96 357.1 699 49.2
BolC5t35121H Brassica oleracea HOM05D004723 ORTHO05D006176 1.7e-94 351.3 703 48.5
Dinv40130 Davidia involucrata HOM05D004723 ORTHO05D006176 8.3e-94 349.0 298 62.4
SHI00027 Sapria himalayana HOM05D004723 ORTHO05D006176 2.2e-86 324.3 591 39.9
Os07g0531700 Oryza sativa ssp. japonica HOM05D004723 ORTHO05D006176 7.1e-85 319.3 699 43.6
AagrBONN_evm.TU.Sc2ySwM_117.2822 Anthoceros agrestis HOM05D004723 ORTHO05D006176 6.0e-84 316.2 707 40.6
Zm00001eb323180 Zea mays HOM05D004723 ORTHO05D006176 3.6e-81 307.0 687 40.6
BcaC01g04506 Brassica carinata HOM05D004723 ORTHO05D006176 4.4e-79 300.1 670 44.5
SMO232G0062 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 1.2e-76 292.0 601 38.8
CDE05G0976 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 3.5e-76 290.4 357 56.0
Thecc.01G155000 Theobroma cacao HOM05D004723 ORTHO05D006176 6.6e-75 286.2 390 55.6
AagrBONN_evm.TU.Sc2ySwM_368.2747 Anthoceros agrestis HOM05D004723 ORTHO05D006176 3.3e-74 283.9 704 38.6
SMO239G0207 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 5.6e-74 283.1 588 38.3
Pp3c17_7210 Physcomitrium patens HOM05D004723 ORTHO05D006176 3.1e-72 277.3 550 37.6
Rhsim08G0030900 Rhododendron simsii HOM05D004723 ORTHO05D006176 3.0e-59 234.2 491 38.5
MD15G1238700 Malus domestica HOM05D004723 ORTHO05D006176 2.5e-58 231.1 309 56.6
Mapoly0061s0018 Marchantia polymorpha HOM05D004723 ORTHO05D006176 1.3e-57 228.8 586 35.7
TAR628G1016 Trochodendron aralioides HOM05D004723 ORTHO05D005421 8.4e-54 216.1 198 57.6
HPP92_019125 Vanilla planifolia HOM05D004723 ORTHO05D006176 2.4e-48 198.0 191 53.4
TPR.G3121 Trifolium pratense HOM05D004723 ORTHO05D006176 3.1e-48 197.6 211 53.1
C03p39900 Brassica napus HOM05D004723 ORTHO05D006176 2.6e-47 194.5 195 53.3
Gohir.D04G039432 Gossypium hirsutum HOM05D004723 ORTHO05D006176 7.6e-47 193.0 249 51.0
CBR_g41392 Chara braunii HOM05D004723 ORTHO05D006176 1.7e-46 191.8 727 30.3
PRCOL_00004947 Prasinoderma coloniale HOM05D004723 ORTHO05D006176 9.3e-45 186.0 337 36.8
Medtr3g107350 Medicago truncatula HOM05D004723 ORTHO05D006176 6.7e-43 179.9 292 52.7
MD15G1238600 Malus domestica HOM05D004723 ORTHO05D006176 2.5e-42 177.9 275 48.7
COL.COLO4_33606 Corchorus olitorius HOM05D004723 ORTHO05D006176 2.2e-41 174.9 263 55.9
MCO13G085 Micromonas commoda HOM05D004723 ORTHO05D006176 2.0e-39 168.3 429 33.1
Cre10.g452500 Chlamydomonas reinhardtii HOM05D004723 ORTHO05D006176 2.5e-37 161.4 241 37.3
COL.COLO4_34179 Corchorus olitorius HOM05D004723 ORTHO05D006176 4.2e-37 160.6 532 31.8
HPP92_019124 Vanilla planifolia HOM05D004723 ORTHO05D006176 1.5e-34 152.1 233 44.6
CDE05G0343 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 2.2e-30 138.3 263 46.0
BolC3t16253H Brassica oleracea HOM05D004723 ORTHO05D006176 4.8e-25 120.6 111 55.0
Medtr3g107330 Medicago truncatula HOM05D004723 ORTHO05D006176 1.8e-24 118.6 154 46.1
TPR.G330 Trifolium pratense HOM05D004723 ORTHO05D006176 1.8e-24 118.6 129 54.3
TPR.G36124 Trifolium pratense HOM05D004723 ORTHO05D006176 3.4e-23 114.4 91 61.5
Dinv40131 Davidia involucrata HOM05D004723 ORTHO05D006176 1.4e-21 109.0 122 54.9
TAR628G0893 Trochodendron aralioides HOM05D004723 ORTHO05D006176 8.0e-20 103.2 106 58.5
TPR.G29970 Trifolium pratense HOM05D004723 ORTHO05D006176 1.5e-18 99.0 63 76.2
Oeu046870.1 Olea europaea HOM05D004723 ORTHO05D006176 2.0e-18 98.6 161 45.3
TPR.G21433 Trifolium pratense HOM05D004723 ORTHO05D006176 2.0e-18 98.6 182 39.6
GSVIVG01005594001 Vitis vinifera HOM05D004723 ORTHO05D006176 1.7e-17 95.5 174 50.6
Lsat_1_v5_gn_5_164041 Lactuca sativa HOM05D004723 ORTHO05D006176 4.1e-16 90.9 173 34.1
THA.LOC104821168 Tarenaya hassleriana HOM05D004723 ORTHO05D006176 4.5e-15 87.4 146 44.5
AagrBONN_evm.TU.Sc2ySwM_117.2819 Anthoceros agrestis HOM05D004723 ORTHO05D006176 5.9e-15 87.0 328 28.4
GSVIVG01005388001 Vitis vinifera HOM05D004723 ORTHO05D006176 7.2e-13 80.1 63 58.7
Thhalv10017085m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 4.0e-11 74.3 162 33.3
Actinidia28727 Actinidia chinensis HOM05D004723 ORTHO05D006176 7.5e-10 70.1 103 44.7
Thecc.01G154900 Theobroma cacao HOM05D004723 ORTHO05D006176 1.1e-08 66.2 63 52.4
BolC3t16252H Brassica oleracea HOM05D004723 ORTHO05D006176 4.1e-08 64.3 59 59.3
FAN17G1680 Fragaria x ananassa HOM05D032679 ORTHO05D022627 9.1e-08 63.2 78 39.7
FAN24G3340 Fragaria x ananassa HOM05D032679 ORTHO05D022627 9.1e-08 63.2 78 39.7
FAN18G3965 Fragaria x ananassa HOM05D032679 ORTHO05D022627 4.5e-07 60.8 78 38.5
FAN03G2005 Fragaria x ananassa HOM05D004723 ORTHO05D002269 7.7e-07 60.1 60 46.7
FAN22G1655 Fragaria x ananassa HOM05D002244 ORTHO05D035452 7.7e-07 60.1 60 46.7
Nn1g05556 Nelumbo nucifera HOM05D004723 ORTHO05D006176 2.2e-06 58.5 48 54.2
COL.COLO4_33622 Corchorus olitorius HOM05D004723 ORTHO05D006176 3.8e-06 57.8 63 46.0


User provided reference genes

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