Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_18231_v3 Cicer arietinum L. HOM05D005903 ORTHO05D007293 4.7e-191 671.0 331 100.0
Medtr4g094760 Medicago truncatula HOM05D005903 ORTHO05D007293 8.3e-164 580.5 332 86.1
TPR.G23817 Trifolium pratense HOM05D005903 ORTHO05D007293 7.5e-157 557.4 329 85.1
Lj4g0014401 Lotus japonicus HOM05D005903 ORTHO05D007293 1.7e-156 556.2 328 83.2
Glyma.08G089000 Glycine max HOM05D005903 ORTHO05D007293 2.9e-156 555.4 329 83.3
Glyma.05G134300 Glycine max HOM05D005903 ORTHO05D007293 1.9e-155 552.7 331 81.6
VMungo0251G1440 Vigna mungo HOM05D005903 ORTHO05D007293 4.6e-154 548.1 331 81.6
QL11p012010 Quercus lobata HOM05D005903 ORTHO05D007293 4.4e-133 478.4 323 70.6
Psat7g087640 Pisum sativum HOM05D005903 ORTHO05D007293 1.7e-132 476.5 265 87.9
Potri.001G076200 Populus trichocarpa HOM05D005903 ORTHO05D007293 9.3e-131 470.7 329 68.7
Atru.chr10.296 Acer truncatum HOM05D005903 ORTHO05D007293 1.3e-129 466.8 330 68.5
arahy.Tifrunner.gnm1.ann1.7A7AL1 Arachis hypogaea HOM05D005903 ORTHO05D007293 2.3e-129 466.1 325 73.8
Manes.03G070940 Manihot esculenta HOM05D005903 ORTHO05D007293 2.3e-129 466.1 325 67.7
Dinv07001 Davidia involucrata HOM05D005903 ORTHO05D007293 3.9e-129 465.3 328 67.7
Thecc.02G003100 Theobroma cacao HOM05D005903 ORTHO05D007293 5.1e-129 464.9 328 67.7
CiPaw.09G138500 Carya illinoinensis HOM05D005903 ORTHO05D007293 1.1e-128 463.8 327 67.0
FAN16G3015 Fragaria x ananassa HOM05D005903 ORTHO05D007293 3.4e-125 452.2 325 68.0
MD05G1245400 Malus domestica HOM05D005903 ORTHO05D007293 2.9e-124 449.1 329 68.1
RcHm_v2.0_Chr5g0021241 Rosa chinensis HOM05D005903 ORTHO05D007293 2.9e-124 449.1 325 67.4
FAN11G1857 Fragaria x ananassa HOM05D005903 ORTHO05D007293 3.8e-124 448.7 325 67.4
Nitab4.5_0010610g0030 Nicotiana tabacum HOM05D005903 ORTHO05D007293 3.8e-124 448.7 328 65.2
FAN21G0687 Fragaria x ananassa HOM05D005903 ORTHO05D007293 4.9e-124 448.4 325 67.1
GSVIVG01012154001 Vitis vinifera HOM05D005903 ORTHO05D007293 4.9e-124 448.4 328 66.8
Hma1.2p1_0088F.1_g045276 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 6.4e-124 448.0 328 64.9
Cpa.g.sc30.99 Carica papaya HOM05D005903 ORTHO05D007293 1.1e-123 447.2 320 66.9
FvH4_3g13050 Fragaria vesca HOM05D005903 ORTHO05D007293 1.1e-123 447.2 325 67.1
FAN25G2454 Fragaria x ananassa HOM05D005903 ORTHO05D007293 1.4e-123 446.8 325 67.1
CANSAT35G1866 Cannabis sativa HOM05D005903 ORTHO05D007293 1.9e-123 446.4 332 64.5
Gohir.A11G047300 Gossypium hirsutum HOM05D005903 ORTHO05D007293 3.2e-123 445.7 323 67.2
Gohir.D11G050900 Gossypium hirsutum HOM05D005903 ORTHO05D007293 9.3e-123 444.1 323 67.2
Gorai.007G055300 Gossypium raimondii HOM05D005903 ORTHO05D007293 2.7e-122 442.6 323 66.9
Nitab4.5_0000844g0290 Nicotiana tabacum HOM05D005903 ORTHO05D007293 2.7e-122 442.6 328 63.7
Nn7g38356 Nelumbo nucifera HOM05D005903 ORTHO05D007293 1.3e-121 440.3 328 64.6
Migut.G01043 Erythranthe guttata HOM05D005903 ORTHO05D007293 1.7e-121 439.9 321 63.9
Eucgr.A00192 Eucalyptus grandis HOM05D005903 ORTHO05D007293 2.3e-121 439.5 319 64.9
Migut.M02015 Erythranthe guttata HOM05D005903 ORTHO05D007293 3.0e-121 439.1 321 64.5
Thhalv10011094m.g Eutrema salsugineum HOM05D005903 ORTHO05D007293 6.6e-121 438.0 320 65.3
TAR624G0428 Trochodendron aralioides HOM05D005903 ORTHO05D007293 8.7e-121 437.6 325 66.2
PGSC0003DMG400007316 Solanum tuberosum HOM05D005903 ORTHO05D007293 1.6e-119 433.3 328 63.1
AT3G47630 Arabidopsis thaliana HOM05D005903 ORTHO05D007293 2.1e-119 433.0 320 64.7
BolC3t19474H Brassica oleracea HOM05D005903 ORTHO05D007293 2.1e-119 433.0 320 65.9
Solyc02g081840.4 Solanum lycopersicum HOM05D005903 ORTHO05D007293 2.1e-119 433.0 325 64.0
EL10Ac5g11217 Beta vulgaris HOM05D005903 ORTHO05D007293 2.8e-119 432.6 319 64.3
BraA06t25085Z Brassica rapa HOM05D005903 ORTHO05D007293 4.8e-119 431.8 320 65.3
BcaC01g01793 Brassica carinata HOM05D005903 ORTHO05D007293 6.2e-119 431.4 320 65.6
C03p71840 Brassica napus HOM05D005903 ORTHO05D007293 6.2e-119 431.4 320 65.6
Phvul.002G188100 Phaseolus vulgaris HOM05D005903 ORTHO05D007293 6.2e-119 431.4 266 80.1
THA.LOC104812245 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 6.2e-119 431.4 355 59.7
vmacro03560 Vaccinium macrocarpon HOM05D005903 ORTHO05D007293 1.1e-118 430.6 337 62.3
THA.LOC104824626 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 2.4e-118 429.5 352 60.2
A06p19990 Brassica napus HOM05D005903 ORTHO05D007293 3.1e-118 429.1 320 65.0
Carub.0005s1376 Capsella rubella HOM05D005903 ORTHO05D007293 4.0e-118 428.7 320 64.1
CAN.G809.52 Capsicum annuum HOM05D005903 ORTHO05D007293 6.9e-118 427.9 327 62.4
Sp1g31680 Schrenkiella parvula HOM05D005903 ORTHO05D007293 9.0e-118 427.6 320 64.4
BolC8t51059H Brassica oleracea HOM05D005903 ORTHO05D007293 1.5e-117 426.8 320 65.0
CARHR156310 Cardamine hirsuta HOM05D005903 ORTHO05D007293 3.4e-117 425.6 320 62.8
Cc09_g05110 Coffea canephora HOM05D005903 ORTHO05D007293 3.4e-117 425.6 324 63.0
Aa31LG9G16250 Aethionema arabicum HOM05D005903 ORTHO05D007293 7.6e-117 424.5 320 64.7
C08p34580 Brassica napus HOM05D005903 ORTHO05D007293 7.6e-117 424.5 320 64.7
MELO3C007010.2 Cucumis melo HOM05D005903 ORTHO05D007293 9.9e-117 424.1 325 61.2
PGR044G2521 Punica granatum HOM05D005903 ORTHO05D007293 9.9e-117 424.1 322 63.4
A09p51850 Brassica napus HOM05D005903 ORTHO05D007293 1.7e-116 423.3 320 63.8
AL5G26920 Arabidopsis lyrata HOM05D005903 ORTHO05D007293 2.2e-116 422.9 320 63.4
BraA09t40620Z Brassica rapa HOM05D005903 ORTHO05D007293 3.8e-116 422.2 320 64.1
BcaC07g40489 Brassica carinata HOM05D005903 ORTHO05D007293 6.4e-116 421.4 320 64.4
CsaV3_6G052990 Cucumis sativus L. HOM05D005903 ORTHO05D007293 6.4e-116 421.4 325 61.2
Dinv26323 Davidia involucrata HOM05D005903 ORTHO05D007293 6.4e-116 421.4 301 66.8
PSO675G2427 Papaver somniferum HOM05D005903 ORTHO05D007293 6.4e-116 421.4 329 59.9
AUR62036920 Chenopodium quinoa HOM05D005903 ORTHO05D007293 1.9e-115 419.9 319 63.0
ClCG01G025750 Citrullus lanatus HOM05D005903 ORTHO05D007293 1.9e-115 419.9 324 61.7
BcaB01g00896 Brassica carinata HOM05D005903 ORTHO05D007293 7.1e-115 417.9 320 63.8
Lsat_1_v5_gn_1_24420 Lactuca sativa HOM05D005903 ORTHO05D007293 3.5e-114 415.6 320 63.1
Cc00_g27340 Coffea canephora HOM05D005903 ORTHO05D007293 1.3e-113 413.7 324 62.3
Ciclev10016117m.g Citrus clementina HOM05D005903 ORTHO05D007293 2.3e-113 412.9 295 67.5
Sed0025041 Sechium edule HOM05D005903 ORTHO05D007293 1.6e-111 406.8 322 61.8
HanXRQChr12g0369311 Helianthus annuus HOM05D005903 ORTHO05D007293 2.1e-111 406.4 320 62.5
CSS0034787 Camellia sinensis var. sinensis HOM05D005903 ORTHO05D007293 1.8e-110 403.3 302 65.2
DCAR_003756 Daucus carota HOM05D005903 ORTHO05D007293 1.8e-110 403.3 363 55.1
Sabra01G0053000 Salix brachista HOM05D005903 ORTHO05D007293 2.4e-110 402.9 331 61.6
Aqoxy7G00859 Aquilegia oxysepala HOM05D005903 ORTHO05D007293 5.3e-110 401.7 328 61.3
ECA247G0018 Erigeron canadensis HOM05D005903 ORTHO05D007293 1.5e-109 400.2 320 61.9
Hund09980 Selenicereus undatus HOM05D005903 ORTHO05D007293 3.4e-109 399.1 366 55.2
Duzib052G0373 Durio zibethinus HOM05D005903 ORTHO05D007293 1.4e-107 393.7 350 58.0
Rhsim05G0003000 Rhododendron simsii HOM05D005903 ORTHO05D007293 1.4e-107 393.7 374 55.1
TWI63G1157 Tripterygium wilfordii HOM05D005903 ORTHO05D007293 1.4e-107 393.7 328 58.8
Rhsim13G0219000 Rhododendron simsii HOM05D005903 ORTHO05D007293 1.2e-106 390.6 323 60.1
Hma1.2p1_0088F.1_g045273 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 4.6e-106 388.7 342 58.5
Dinv01020 Davidia involucrata HOM05D005903 ORTHO05D007293 1.0e-105 387.5 328 58.8
Hma1.2p1_1011F.1_g247520 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 3.9e-105 385.6 342 57.9
Haze_05254 Corylus avellana HOM05D005903 ORTHO05D007293 1.3e-103 380.6 327 59.6
ATR0605G282 Amborella trichopoda HOM05D005903 ORTHO05D007293 6.3e-103 378.3 318 57.9
arahy.Tifrunner.gnm1.ann1.STP4KF Arachis hypogaea HOM05D005903 ORTHO05D007293 6.9e-102 374.8 326 63.5
Lj1C1150G3 Lonicera japonica HOM05D005903 ORTHO05D007293 7.9e-98 361.3 292 61.3
PSO675G2002 Papaver somniferum HOM05D005903 ORTHO05D007293 3.3e-96 355.9 329 52.3
Rhsim07G0106900 Rhododendron simsii HOM05D005903 ORTHO05D007293 1.6e-95 353.6 321 57.0
SGA_v2.0_scaffold31G12765 Striga asiatica HOM05D005903 ORTHO05D007293 2.2e-95 353.2 326 55.2
AUR62032162 Chenopodium quinoa HOM05D005903 ORTHO05D007293 6.9e-94 348.2 277 61.4
Prupe.7G025500 Prunus persica HOM05D005903 ORTHO05D007293 6.1e-90 335.1 230 69.1
HPP92_021274 Vanilla planifolia HOM05D005903 ORTHO05D007293 1.0e-89 334.3 329 52.3
Prupe.4G118500 Prunus persica HOM05D005903 ORTHO05D007293 5.1e-89 332.0 247 66.0
Peaxi162Scf00036g02217 Petunia axillaris HOM05D005903 ORTHO05D007293 2.5e-88 329.7 295 57.3
SEGI_28167 Sequoiadendron giganteum HOM05D005903 ORTHO05D007293 3.3e-88 329.3 323 51.7
Sopen02g026460 Solanum pennellii HOM05D005903 ORTHO05D007293 2.2e-87 326.6 256 63.3
Lalb_Chr07g0188231 Lupinus albus HOM05D005903 ORTHO05D007293 2.0e-85 320.1 187 80.7
COL.COLO4_05791 Corchorus olitorius HOM05D005903 ORTHO05D007293 3.9e-81 305.8 183 76.0
CDE06G1059 Ceratophyllum demersum HOM05D005903 ORTHO05D007293 4.4e-80 302.4 324 50.0
AagrBONN_evm.TU.Sc2ySwM_344.2832 Anthoceros agrestis HOM05D005903 ORTHO05D007293 2.5e-75 286.6 323 46.7
Pp3c7_4190 Physcomitrium patens HOM05D005903 ORTHO05D007293 6.1e-74 282.0 340 43.8
Mapoly0019s0171 Marchantia polymorpha HOM05D005903 ORTHO05D007293 2.3e-73 280.0 325 44.3
Zm00001eb201720 Zea mays HOM05D005903 ORTHO05D007293 3.3e-72 276.2 210 63.3
Os11g0549650 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 4.4e-72 275.8 211 63.0
SMO367G0859 Selaginella moellendorffii HOM05D005903 ORTHO05D007293 5.7e-72 275.4 324 44.4
Oeu056062.1 Olea europaea HOM05D005903 ORTHO05D007293 1.4e-62 244.2 163 68.1
unitig_46.g18341 Utricularia gibba HOM05D005903 ORTHO05D007293 2.8e-55 219.9 329 42.6
Lalb_Chr07g0188221 Lupinus albus HOM05D005903 ORTHO05D007293 1.6e-53 214.2 156 71.8
Gohir.D11G050975 Gossypium hirsutum HOM05D005903 ORTHO05D007293 7.7e-53 211.8 170 62.9
Os11g0549690 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 2.0e-48 197.2 152 61.2
Sc04g0004130 Simmondsia chinensis HOM05D005903 ORTHO05D007293 3.7e-47 193.0 167 56.9
Sc04g0004120 Simmondsia chinensis HOM05D005903 ORTHO05D007293 5.0e-44 182.6 111 73.0
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 3.6e-42 176.4 192 45.3
Haze_05249 Corylus avellana HOM05D005903 ORTHO05D007293 2.6e-40 170.2 203 53.7
Cfa024540 Carpinus fangiana HOM05D005903 ORTHO05D007293 2.9e-39 166.8 278 36.3
MCO11G061 Micromonas commoda HOM05D005903 ORTHO05D007293 5.6e-35 152.5 345 30.7
Cre10.g436900 Chlamydomonas reinhardtii HOM05D005903 ORTHO05D007293 2.1e-34 150.6 315 34.6
Migut.O00470 Erythranthe guttata HOM05D005903 ORTHO05D007293 1.1e-30 138.3 144 52.1
PRCOL_00001260 Prasinoderma coloniale HOM05D005903 ORTHO05D007293 1.0e-28 131.7 354 30.8
CARHR106840 Cardamine hirsuta HOM05D005903 ORTHO05D007293 5.4e-22 109.4 119 49.6
Glyma.08G193350 Glycine max HOM05D005903 ORTHO05D007293 9.6e-19 98.6 60 80.0
COL.COLO4_05792 Corchorus olitorius HOM05D005903 ORTHO05D007293 2.4e-14 84.0 76 52.6
Os05g0295700 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 5.4e-14 82.8 59 57.6
CAN.G508.15 Capsicum annuum HOM05D005903 ORTHO05D007293 2.3e-12 77.4 246 26.4
SHI32711 Sapria himalayana HOM05D005903 ORTHO05D007293 8.1e-10 68.9 59 49.2
CBR_g8146 Chara braunii HOM05D005903 ORTHO05D000048 2.0e-08 64.3 66 43.9
Oeu056063.2 Olea europaea HOM05D007234 ORTHO05D008488 1.7e-07 61.2 60 50.0
SHI32710 Sapria himalayana HOM05D005903 ORTHO05D007293 2.2e-07 60.8 80 43.8


User provided reference genes

Program Settings