Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_18188_v3 Cicer arietinum L. HOM05D003290 ORTHO05D003866 2.8e-111 405.2 194 100.0
Ca_18198_v3 Cicer arietinum L. HOM05D003290 ORTHO05D003866 3.7e-95 351.7 169 100.0
Psat7g085560 Pisum sativum HOM05D003290 ORTHO05D003866 2.4e-94 349.0 175 96.0
TPR.G11847 Trifolium pratense HOM05D003290 ORTHO05D003866 1.2e-90 336.7 175 92.6
Glyma.08G092000 Glycine max HOM05D003290 ORTHO05D003866 3.6e-90 335.1 175 90.9
Lj4g0019755 Lotus japonicus HOM05D003290 ORTHO05D003866 1.3e-87 326.6 169 91.1
arahy.Tifrunner.gnm1.ann1.4ZG746 Arachis hypogaea HOM05D003290 ORTHO05D003866 2.8e-87 325.5 169 91.7
arahy.Tifrunner.gnm1.ann1.GST19D Arachis hypogaea HOM05D003290 ORTHO05D003866 2.8e-87 325.5 169 91.7
arahy.Tifrunner.gnm1.ann1.P8F85A Arachis hypogaea HOM05D003290 ORTHO05D003866 3.7e-87 325.1 169 91.7
Phvul.002G185150 Phaseolus vulgaris HOM05D003290 ORTHO05D003866 9.1e-86 320.5 169 89.9
Lalb_Chr13g0293001 Lupinus albus HOM05D003290 ORTHO05D003866 2.0e-85 319.3 173 86.1
Lj4g0008630 Lotus japonicus HOM05D003290 ORTHO05D003866 2.6e-85 318.9 175 86.9
VMungo0251G2069 Vigna mungo HOM05D003290 ORTHO05D003866 2.6e-85 318.9 175 85.1
Potri.008G140700 Populus trichocarpa HOM05D003290 ORTHO05D003866 2.1e-82 309.3 175 81.7
QL03p039662 Quercus lobata HOM05D003290 ORTHO05D003866 3.7e-79 298.5 175 78.3
Atru.chr11.983 Acer truncatum HOM05D003290 ORTHO05D003866 8.2e-79 297.4 175 78.9
Sabra08G0106800 Salix brachista HOM05D003290 ORTHO05D003866 1.1e-78 297.0 168 81.5
CANSAT78G1043 Cannabis sativa HOM05D003290 ORTHO05D003866 1.4e-78 296.6 169 81.7
GSVIVG01011573001 Vitis vinifera HOM05D003290 ORTHO05D003866 1.4e-78 296.6 169 81.7
Cpa.g.sc2.68 Carica papaya HOM05D003290 ORTHO05D003866 1.8e-78 296.2 175 81.1
Lj6C728G5 Lonicera japonica HOM05D003290 ORTHO05D003866 1.8e-78 296.2 170 80.0
Dinv07020 Davidia involucrata HOM05D003290 ORTHO05D003866 3.1e-78 295.4 169 81.7
TWI56G1413 Tripterygium wilfordii HOM05D003290 ORTHO05D003866 4.1e-78 295.0 169 82.8
Eucgr.G02062 Eucalyptus grandis HOM05D003290 ORTHO05D003866 5.3e-78 294.7 169 81.7
TAR629G0420 Trochodendron aralioides HOM05D003290 ORTHO05D003866 7.0e-78 294.3 169 79.3
COL.COLO4_27555 Corchorus olitorius HOM05D003290 ORTHO05D003866 9.1e-78 293.9 177 78.0
RcHm_v2.0_Chr4g0445491 Rosa chinensis HOM05D003290 ORTHO05D003866 9.1e-78 293.9 175 79.4
TWI74G0523 Tripterygium wilfordii HOM05D003290 ORTHO05D003866 1.2e-77 293.5 169 82.8
Potri.010G100900 Populus trichocarpa HOM05D003290 ORTHO05D003866 1.6e-77 293.1 175 78.3
Actinidia12429 Actinidia chinensis HOM05D003290 ORTHO05D003866 2.6e-77 292.4 170 81.2
FAN22G1284 Fragaria x ananassa HOM05D003290 ORTHO05D003866 3.5e-77 292.0 175 78.3
Cfa015081 Carpinus fangiana HOM05D003290 ORTHO05D003866 4.5e-77 291.6 169 79.9
DCAR_030317 Daucus carota HOM05D003290 ORTHO05D003866 7.7e-77 290.8 169 77.5
Nn4g24593 Nelumbo nucifera HOM05D003290 ORTHO05D003866 7.7e-77 290.8 169 78.7
MSTRG.2101 Avicennia marina HOM05D003290 ORTHO05D003866 1.0e-76 290.4 169 78.7
Hma1.2p1_0197F.1_g085170 Hydrangea macrophylla HOM05D003290 ORTHO05D003866 1.0e-76 290.4 169 79.3
Prupe.1G339200 Prunus persica HOM05D003290 ORTHO05D003866 1.0e-76 290.4 169 79.9
FvH4_4g35880 Fragaria vesca HOM05D003290 ORTHO05D003866 1.3e-76 290.0 175 77.7
FAN12G1356 Fragaria x ananassa HOM05D003290 ORTHO05D003866 1.3e-76 290.0 175 77.7
EL10Ac6g15381 Beta vulgaris HOM05D003290 ORTHO05D003866 2.9e-76 288.9 178 77.0
Migut.E00570 Erythranthe guttata HOM05D003290 ORTHO05D003866 6.5e-76 287.7 169 79.3
Gorai.005G154600 Gossypium raimondii HOM05D003290 ORTHO05D003866 8.5e-76 287.3 169 77.5
Thecc.02G301400 Theobroma cacao HOM05D003290 ORTHO05D003866 8.5e-76 287.3 169 79.9
CAN.G282.94 Capsicum annuum HOM05D003290 ORTHO05D003866 1.1e-75 287.0 169 78.7
PGR142G0945 Punica granatum HOM05D003290 ORTHO05D003866 1.1e-75 287.0 169 78.7
Lsat_1_v5_gn_5_35481 Lactuca sativa HOM05D003290 ORTHO05D003866 1.9e-75 286.2 169 77.5
Gohir.A03G113800 Gossypium hirsutum HOM05D003290 ORTHO05D003866 2.5e-75 285.8 169 77.5
Gohir.D02G138100 Gossypium hirsutum HOM05D003290 ORTHO05D003866 2.5e-75 285.8 169 76.9
Rhsim09G0082800 Rhododendron simsii HOM05D003290 ORTHO05D003866 2.5e-75 285.8 169 78.1
Sc03g0005960 Simmondsia chinensis HOM05D003290 ORTHO05D003866 2.5e-75 285.8 169 76.9
CsaV3_5G017250 Cucumis sativus L. HOM05D003290 ORTHO05D003866 4.2e-75 285.0 175 76.0
MELO3C005228.2 Cucumis melo HOM05D003290 ORTHO05D003866 2.1e-74 282.7 175 75.4
Sed0007344 Sechium edule HOM05D003290 ORTHO05D003866 2.7e-74 282.3 175 74.9
PGSC0003DMG400022786 Solanum tuberosum HOM05D003290 ORTHO05D003866 3.6e-74 282.0 169 76.9
Nitab4.5_0007122g0010 Nicotiana tabacum HOM05D003290 ORTHO05D003866 8.0e-74 280.8 169 76.9
Peaxi162Scf00349g00111 Petunia axillaris HOM05D003290 ORTHO05D003866 1.0e-73 280.4 169 76.9
CSS0011262 Camellia sinensis var. sinensis HOM05D003290 ORTHO05D003866 1.4e-73 280.0 176 75.6
CDE06G1581 Ceratophyllum demersum HOM05D003290 ORTHO05D003866 1.4e-73 280.0 169 76.3
MBI13_g17879_MAGBIO Magnolia biondii HOM05D003290 ORTHO05D003866 1.4e-73 280.0 169 77.5
AUR62017800 Chenopodium quinoa HOM05D003290 ORTHO05D003866 1.8e-73 279.6 175 74.3
Sopen01g001090 Solanum pennellii HOM05D003290 ORTHO05D003866 1.8e-73 279.6 169 76.9
Manes.15G139900 Manihot esculenta HOM05D003290 ORTHO05D003866 3.0e-73 278.9 175 76.6
Nitab4.5_0001529g0040 Nicotiana tabacum HOM05D003290 ORTHO05D003866 4.0e-73 278.5 169 76.3
Dinv02702 Davidia involucrata HOM05D003290 ORTHO05D003866 5.2e-73 278.1 171 76.6
HanXRQChr15g0469331 Helianthus annuus HOM05D003290 ORTHO05D003866 6.7e-73 277.7 169 76.9
Solyc01g005020.3 Solanum lycopersicum HOM05D003290 ORTHO05D003866 1.1e-72 276.9 169 76.3
AUR62003491 Chenopodium quinoa HOM05D003290 ORTHO05D003866 1.5e-72 276.6 177 72.9
Os12g0641100 Oryza sativa ssp. japonica HOM05D003290 ORTHO05D003866 1.5e-72 276.6 170 74.7
ECA234G2339 Erigeron canadensis HOM05D003290 ORTHO05D003866 2.0e-72 276.2 169 74.6
Ah.03g147350 Amaranthus hybridus HOM05D003290 ORTHO05D003866 2.6e-72 275.8 172 77.3
ClCG01G006860 Citrullus lanatus HOM05D003290 ORTHO05D003866 6.3e-71 271.2 169 75.1
THA.LOC104805106 Tarenaya hassleriana HOM05D003290 ORTHO05D003866 6.3e-71 271.2 175 74.3
DCAR_030318 Daucus carota HOM05D003290 ORTHO05D003866 1.4e-70 270.0 169 72.2
Zm00001eb033240 Zea mays HOM05D003290 ORTHO05D003866 1.8e-70 269.6 169 74.6
SGA_v2.0_scaffold348G49593 Striga asiatica HOM05D003290 ORTHO05D003866 7.0e-70 267.7 169 74.0
ATR0598G076 Amborella trichopoda HOM05D003290 ORTHO05D003866 1.6e-69 266.5 169 75.1
CiPaw.05G159900 Carya illinoinensis HOM05D003290 ORTHO05D003866 7.7e-69 264.2 170 75.9
unitig_699.g19544 Utricularia gibba HOM05D003290 ORTHO05D003866 2.2e-68 262.7 186 61.3
FAN07G0883 Fragaria x ananassa HOM05D003290 ORTHO05D003866 3.8e-68 261.9 175 71.4
Duzib268G0109 Durio zibethinus HOM05D003290 ORTHO05D003866 1.1e-67 260.4 175 70.3
PSO017G1263 Papaver somniferum HOM05D003290 ORTHO05D003866 1.5e-67 260.0 169 70.4
PSO729G0139 Papaver somniferum HOM05D003290 ORTHO05D003866 1.9e-67 259.6 169 68.6
BraA09t37969Z Brassica rapa HOM05D003290 ORTHO05D003866 5.5e-67 258.1 175 69.7
BcaC04g21541 Brassica carinata HOM05D003290 ORTHO05D003866 7.2e-67 257.7 175 69.7
A09p23700 Brassica napus HOM05D003290 ORTHO05D003866 7.2e-67 257.7 175 69.7
C09p30540 Brassica napus HOM05D003290 ORTHO05D003866 7.2e-67 257.7 175 69.7
BolC9t55917H Brassica oleracea HOM05D003290 ORTHO05D003866 7.2e-67 257.7 175 69.7
BcaB07g30722 Brassica carinata HOM05D003290 ORTHO05D003866 9.4e-67 257.3 169 71.6
Sp2g13410 Schrenkiella parvula HOM05D003290 ORTHO05D003866 9.4e-67 257.3 169 72.2
Thhalv10003547m.g Eutrema salsugineum HOM05D003290 ORTHO05D003866 2.1e-66 256.1 175 69.1
Aa31LG2G7940 Aethionema arabicum HOM05D003290 ORTHO05D003866 2.7e-66 255.8 175 68.0
Manes.17G091100 Manihot esculenta HOM05D003290 ORTHO05D003866 4.7e-66 255.0 175 72.0
AL5G11170 Arabidopsis lyrata HOM05D003290 ORTHO05D003866 8.0e-66 254.2 175 70.3
Carub.0005s0099 Capsella rubella HOM05D003290 ORTHO05D003866 1.0e-65 253.8 175 68.6
PSO170G2638 Papaver somniferum HOM05D003290 ORTHO05D003866 4.0e-65 251.9 169 65.7
PSO170G6380 Papaver somniferum HOM05D003290 ORTHO05D003866 4.0e-65 251.9 169 65.7
CARHR144580 Cardamine hirsuta HOM05D003290 ORTHO05D003866 1.2e-64 250.4 175 67.4
AT1G14660 Arabidopsis thaliana HOM05D003290 ORTHO05D003866 2.8e-63 245.7 175 66.9
PSO339G1388 Papaver somniferum HOM05D003290 ORTHO05D003866 3.7e-63 245.4 169 65.7
HPP92_016411 Vanilla planifolia HOM05D003290 ORTHO05D003866 6.3e-63 244.6 169 67.5
AT2G01980 Arabidopsis thaliana HOM05D003290 ORTHO05D003866 8.3e-63 244.2 176 68.8
Sp1g13040 Schrenkiella parvula HOM05D003290 ORTHO05D003866 2.4e-62 242.7 176 64.2
Carub.0001s1442 Capsella rubella HOM05D003290 ORTHO05D003866 3.1e-62 242.3 175 63.4
BcaB02g06535 Brassica carinata HOM05D003290 ORTHO05D003866 5.9e-61 238.0 175 65.7
BcaC05g25383 Brassica carinata HOM05D003290 ORTHO05D003866 5.9e-61 238.0 175 64.6
C05p12620 Brassica napus HOM05D003290 ORTHO05D003866 5.9e-61 238.0 175 64.6
BolC5t30005H Brassica oleracea HOM05D003290 ORTHO05D003866 5.9e-61 238.0 175 64.6
AL1G26630 Arabidopsis lyrata HOM05D003290 ORTHO05D003866 7.7e-61 237.7 175 64.6
Aqoxy4G00109 Aquilegia oxysepala HOM05D003290 ORTHO05D003866 3.8e-60 235.3 169 61.5
CARHR015150 Cardamine hirsuta HOM05D003290 ORTHO05D003866 5.0e-60 235.0 169 65.1
ECA246G3356 Erigeron canadensis HOM05D003290 ORTHO05D003866 2.5e-59 232.6 169 63.9
unitig_27.g25301 Utricularia gibba HOM05D003290 ORTHO05D003866 2.5e-59 232.6 180 65.0
A06p10710 Brassica napus HOM05D003290 ORTHO05D003866 9.4e-59 230.7 175 62.9
Sp1g13030 Schrenkiella parvula HOM05D003290 ORTHO05D003866 9.4e-59 230.7 169 64.5
Thhalv10006906m.g Eutrema salsugineum HOM05D003290 ORTHO05D003866 1.2e-58 230.3 176 63.6
SEGI_13848 Sequoiadendron giganteum HOM05D003290 ORTHO05D003866 2.1e-58 229.6 171 66.1
BraA06t24252Z Brassica rapa HOM05D003290 ORTHO05D003866 3.6e-58 228.8 175 63.4
Sp1g13020 Schrenkiella parvula HOM05D003290 ORTHO05D003866 2.0e-56 223.0 175 61.7
Mapoly0062s0025 Marchantia polymorpha HOM05D003290 ORTHO05D003866 9.2e-54 214.2 172 62.2
Mapoly0206s0002 Marchantia polymorpha HOM05D003290 ORTHO05D003866 4.5e-53 211.8 172 60.5
BcaC05g25381 Brassica carinata HOM05D003290 ORTHO05D003866 1.5e-51 206.8 175 59.4
SMO367G0872 Selaginella moellendorffii HOM05D003290 ORTHO05D003866 6.1e-50 201.4 174 58.0
AagrBONN_evm.TU.Sc2ySwM_368.1085 Anthoceros agrestis HOM05D003290 ORTHO05D003866 8.9e-49 197.6 174 58.0
Pp3c22_9570 Physcomitrium patens HOM05D003290 ORTHO05D003866 1.2e-48 197.2 176 54.0
HanXRQChr12g0381631 Helianthus annuus HOM05D003290 ORTHO05D003866 1.3e-47 193.7 170 58.8
AagrBONN_evm.TU.Sc2ySwM_344.5331 Anthoceros agrestis HOM05D003290 ORTHO05D003866 3.7e-47 192.2 178 53.4
Lsat_1_v5_gn_6_55260 Lactuca sativa HOM05D003290 ORTHO05D003866 3.7e-47 192.2 171 62.6
vmacro10756 Vaccinium macrocarpon HOM05D003290 ORTHO05D003866 2.7e-45 186.0 111 76.6
SMO367G0300 Selaginella moellendorffii HOM05D003290 ORTHO05D003866 1.3e-44 183.7 169 55.0
Pp3c16_14280 Physcomitrium patens HOM05D003290 ORTHO05D003866 1.1e-43 180.6 174 51.7
arahy.Tifrunner.gnm1.ann1.DQT168 Arachis hypogaea HOM05D003290 ORTHO05D003866 8.9e-41 171.0 94 88.3
Cc11_g05260 Coffea canephora HOM05D003290 ORTHO05D003866 1.3e-39 167.2 102 76.5
Haze_10795 Corylus avellana HOM05D003290 ORTHO05D003866 2.2e-39 166.4 94 81.9
Aa31LG2G2650 Aethionema arabicum HOM05D003290 ORTHO05D003866 5.0e-36 155.2 205 44.4
AL1G48790 Arabidopsis lyrata HOM05D003290 ORTHO05D003866 2.0e-32 143.3 122 58.2
Peaxi162Scf00130g01216 Petunia axillaris HOM05D003290 ORTHO05D003866 1.2e-29 134.0 154 40.3
Eucgr.B02635 Eucalyptus grandis HOM05D003290 ORTHO05D003866 4.6e-29 132.1 176 40.9
CAN.G1237.29 Capsicum annuum HOM05D003290 ORTHO05D003866 3.0e-28 129.4 153 40.5
PGR102G1943 Punica granatum HOM05D003290 ORTHO05D003866 1.9e-27 126.7 129 47.3
Sopen04g009310 Solanum pennellii HOM05D003290 ORTHO05D003866 1.9e-27 126.7 153 38.6
Nitab4.5_0005031g0060 Nicotiana tabacum HOM05D003290 ORTHO05D003866 4.3e-27 125.6 153 40.5
Solyc04g018100.4 Solanum lycopersicum HOM05D003290 ORTHO05D003866 4.3e-27 125.6 153 38.6
Nitab4.5_0009873g0010 Nicotiana tabacum HOM05D003290 ORTHO05D003866 2.8e-26 122.9 153 40.5
Cc11_g05270 Coffea canephora HOM05D003290 ORTHO05D003866 8.1e-26 121.3 68 79.4
Aqoxy1G02273 Aquilegia oxysepala HOM05D003290 ORTHO05D003866 5.8e-24 115.2 102 55.9
MBI13_g26466_MAGBIO Magnolia biondii HOM05D003290 ORTHO05D003866 2.2e-23 113.2 68 73.5
MD13G1014200 Malus domestica HOM05D003290 ORTHO05D003866 1.4e-22 110.5 68 76.5
MD16G1011400 Malus domestica HOM05D003290 ORTHO05D003866 7.8e-13 78.2 39 92.3
MD16G1011500 Malus domestica HOM05D003290 ORTHO05D003866 3.6e-10 69.3 42 71.4


User provided reference genes

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