Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_18111_v3 Cicer arietinum L. HOM05D006699 ORTHO05D008399 2.2e-191 672.2 340 100.0
Psat7g165360 Pisum sativum HOM05D006699 ORTHO05D008399 3.4e-160 568.5 333 84.4
Medtr4g079850 Medicago truncatula HOM05D006699 ORTHO05D008399 6.6e-148 527.7 337 80.4
VMungo1127G1340 Vigna mungo HOM05D006699 ORTHO05D008399 8.3e-143 510.8 333 78.1
Glyma.06G277600 Glycine max HOM05D006699 ORTHO05D008399 5.9e-141 504.6 333 78.1
Lj3g0015335 Lotus japonicus HOM05D006699 ORTHO05D008399 1.1e-139 500.4 336 75.6
Phvul.011G130500 Phaseolus vulgaris HOM05D006699 ORTHO05D008399 1.5e-139 500.0 334 76.3
Lalb_Chr01g0006001 Lupinus albus HOM05D006699 ORTHO05D008399 5.6e-139 498.0 336 77.4
arahy.Tifrunner.gnm1.ann1.GAG0UF Arachis hypogaea HOM05D006699 ORTHO05D008399 3.1e-137 492.3 337 76.0
arahy.Tifrunner.gnm1.ann1.0K2T49 Arachis hypogaea HOM05D006699 ORTHO05D008399 2.0e-136 489.6 337 75.7
Cfa023335 Carpinus fangiana HOM05D006699 ORTHO05D008399 3.4e-128 462.2 342 70.2
Dinv15443 Davidia involucrata HOM05D006699 ORTHO05D008399 1.7e-127 459.9 340 70.0
QL08p041638 Quercus lobata HOM05D006699 ORTHO05D008399 2.2e-127 459.5 337 68.8
Haze_13371 Corylus avellana HOM05D006699 ORTHO05D008399 2.9e-127 459.1 342 69.6
FvH4_6g27380 Fragaria vesca HOM05D006699 ORTHO05D008399 8.3e-127 457.6 340 70.3
QL08p041677 Quercus lobata HOM05D006699 ORTHO05D008399 1.9e-126 456.4 337 68.5
MD17G1230900 Malus domestica HOM05D006699 ORTHO05D008399 3.2e-126 455.7 338 68.9
RcHm_v2.0_Chr2g0129651 Rosa chinensis HOM05D006699 ORTHO05D008399 2.7e-125 452.6 339 70.5
CANSAT64G2599 Cannabis sativa HOM05D006699 ORTHO05D008399 3.5e-125 452.2 336 67.9
Eucgr.A01914 Eucalyptus grandis HOM05D006699 ORTHO05D008399 3.5e-125 452.2 334 69.8
Thecc.01G150500 Theobroma cacao HOM05D006699 ORTHO05D008399 4.6e-125 451.8 338 68.0
MD09G1238000 Malus domestica HOM05D006699 ORTHO05D008399 1.0e-124 450.7 338 67.5
GSVIVG01020707001 Vitis vinifera HOM05D006699 ORTHO05D008399 1.0e-124 450.7 338 68.9
CiPaw.04G132200 Carya illinoinensis HOM05D006699 ORTHO05D008399 5.1e-124 448.4 337 68.0
Potri.014G142200 Populus trichocarpa HOM05D006699 ORTHO05D008399 1.6e-122 443.4 333 68.8
Prupe.3G118500 Prunus persica HOM05D006699 ORTHO05D008399 2.1e-122 443.0 334 67.7
COL.COLO4_33580 Corchorus olitorius HOM05D006699 ORTHO05D008399 3.6e-122 442.2 346 67.3
FAN14G2123 Fragaria x ananassa HOM05D006699 ORTHO05D008399 4.7e-122 441.8 352 67.6
CSS0012388 Camellia sinensis var. sinensis HOM05D006699 ORTHO05D008399 8.1e-122 441.0 344 66.6
Ciclev10015418m.g Citrus clementina HOM05D006699 ORTHO05D008399 2.2e-119 433.0 333 65.8
TAR626G0153 Trochodendron aralioides HOM05D006699 ORTHO05D008399 2.9e-119 432.6 367 63.2
Gohir.A12G086400 Gossypium hirsutum HOM05D006699 ORTHO05D008399 3.7e-119 432.2 337 65.9
PGR042G0843 Punica granatum HOM05D006699 ORTHO05D008399 3.7e-119 432.2 327 68.5
Thhalv10016897m.g Eutrema salsugineum HOM05D006699 ORTHO05D008399 4.9e-119 431.8 328 66.8
FAN09G4348 Fragaria x ananassa HOM05D006699 ORTHO05D008399 1.4e-118 430.3 371 64.4
TPR.G28306 Trifolium pratense HOM05D006699 ORTHO05D008399 1.4e-118 430.3 274 79.6
PGSC0003DMG400007857 Solanum tuberosum HOM05D006699 ORTHO05D008399 2.4e-118 429.5 342 65.2
C04p60180 Brassica napus HOM05D006699 ORTHO05D008399 4.1e-118 428.7 329 66.6
BolC4t27520H Brassica oleracea HOM05D006699 ORTHO05D008399 4.1e-118 428.7 329 66.6
Sp4g13510 Schrenkiella parvula HOM05D006699 ORTHO05D008399 7.1e-118 427.9 330 66.4
AT2G31040 Arabidopsis thaliana HOM05D006699 ORTHO05D008399 9.2e-118 427.6 329 66.0
BraA04t17899Z Brassica rapa HOM05D006699 ORTHO05D008399 9.2e-118 427.6 329 66.0
A04p23730 Brassica napus HOM05D006699 ORTHO05D008399 1.2e-117 427.2 329 65.7
Gorai.008G095400 Gossypium raimondii HOM05D006699 ORTHO05D008399 1.6e-117 426.8 336 65.5
AUR62039018 Chenopodium quinoa HOM05D006699 ORTHO05D008399 6.0e-117 424.9 349 62.8
AL4G26070 Arabidopsis lyrata HOM05D006699 ORTHO05D008399 1.7e-116 423.3 329 65.7
AL4G26150 Arabidopsis lyrata HOM05D006699 ORTHO05D008399 2.3e-116 422.9 329 65.7
HanXRQChr17g0557951 Helianthus annuus HOM05D006699 ORTHO05D008399 1.1e-115 420.6 336 64.3
Gohir.D12G085000 Gossypium hirsutum HOM05D006699 ORTHO05D008399 1.5e-115 420.2 336 64.9
Carub.0004s1225 Capsella rubella HOM05D006699 ORTHO05D008399 9.6e-115 417.5 330 65.5
Peaxi162Scf00384g00423 Petunia axillaris HOM05D006699 ORTHO05D008399 9.6e-115 417.5 328 67.4
TWI59G0496 Tripterygium wilfordii HOM05D006699 ORTHO05D008399 1.2e-114 417.2 328 64.6
CsaV3_6G018450 Cucumis sativus L. HOM05D006699 ORTHO05D008399 2.1e-114 416.4 336 64.3
MSTRG.15092 Avicennia marina HOM05D006699 ORTHO05D008399 4.7e-114 415.2 338 63.9
ClCG02G017820 Citrullus lanatus HOM05D006699 ORTHO05D008399 1.4e-113 413.7 339 64.3
CAN.G1049.6 Capsicum annuum HOM05D006699 ORTHO05D008399 1.8e-113 413.3 339 63.1
EL10Ac2g03349 Beta vulgaris HOM05D006699 ORTHO05D008399 1.2e-112 410.6 338 63.0
PSO229G0039 Papaver somniferum HOM05D006699 ORTHO05D008399 1.2e-112 410.6 353 62.3
CARHR124570 Cardamine hirsuta HOM05D006699 ORTHO05D008399 1.5e-112 410.2 331 63.7
CDE10G1046 Ceratophyllum demersum HOM05D006699 ORTHO05D008399 1.5e-112 410.2 332 63.0
Migut.M00261 Erythranthe guttata HOM05D006699 ORTHO05D008399 2.0e-112 409.8 338 64.2
PSO675G3944 Papaver somniferum HOM05D006699 ORTHO05D008399 5.8e-112 408.3 343 63.3
ECA233G1148 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.3e-111 407.1 329 63.8
SGA_v2.0_scaffold9G04816 Striga asiatica HOM05D006699 ORTHO05D008399 1.3e-111 407.1 331 64.7
Lj1A681T38 Lonicera japonica HOM05D006699 ORTHO05D008399 1.7e-111 406.8 329 63.5
Lsat_1_v5_gn_8_140640 Lactuca sativa HOM05D006699 ORTHO05D008399 2.2e-111 406.4 338 62.4
Sabra14G0107300 Salix brachista HOM05D006699 ORTHO05D008399 4.9e-111 405.2 331 64.7
Rhsim06G0131200 Rhododendron simsii HOM05D006699 ORTHO05D008399 1.4e-110 403.7 305 65.9
Nitab4.5_0001095g0100 Nicotiana tabacum HOM05D006699 ORTHO05D008399 3.2e-110 402.5 337 63.2
Solyc12g010870.3 Solanum lycopersicum HOM05D006699 ORTHO05D008399 3.2e-110 402.5 304 68.1
Sopen12g006230 Solanum pennellii HOM05D006699 ORTHO05D008399 1.2e-109 400.6 301 68.1
unitig_0.g2026 Utricularia gibba HOM05D006699 ORTHO05D008399 5.1e-108 395.2 356 58.7
ATR0602G053 Amborella trichopoda HOM05D006699 ORTHO05D008399 1.1e-107 394.0 321 62.6
FAN02G3357 Fragaria x ananassa HOM05D006699 ORTHO05D008399 1.9e-107 393.3 302 68.9
Manes.02G091200 Manihot esculenta HOM05D006699 ORTHO05D008399 2.1e-106 389.8 347 60.5
Nitab4.5_0000537g0130 Nicotiana tabacum HOM05D006699 ORTHO05D008399 1.4e-105 387.1 347 61.1
PGSC0003DMG400020443 Solanum tuberosum HOM05D006699 ORTHO05D008399 9.0e-105 384.4 348 59.5
Solyc07g055050.3 Solanum lycopersicum HOM05D006699 ORTHO05D008399 3.8e-103 379.0 348 58.6
Sopen07g027160 Solanum pennellii HOM05D006699 ORTHO05D008399 3.8e-103 379.0 348 58.6
Hund07812 Selenicereus undatus HOM05D006699 ORTHO05D008399 1.1e-102 377.5 355 56.3
Actinidia11153 Actinidia chinensis HOM05D006699 ORTHO05D008399 5.4e-102 375.2 344 59.3
DCAR_017060 Daucus carota HOM05D006699 ORTHO05D008399 1.6e-101 373.6 338 58.6
Nitab4.5_0011277g0010 Nicotiana tabacum HOM05D006699 ORTHO05D008399 3.6e-98 362.5 350 58.0
Aa31LG1G7380 Aethionema arabicum HOM05D006699 ORTHO05D008399 3.4e-96 355.9 342 57.3
Nitab4.5_0009754g0010 Nicotiana tabacum HOM05D006699 ORTHO05D008399 5.8e-96 355.1 341 58.9
Os01g0673800 Oryza sativa ssp. japonica HOM05D006699 ORTHO05D008399 1.3e-95 354.0 319 61.1
Sc06g0009080 Simmondsia chinensis HOM05D006699 ORTHO05D008399 5.6e-91 338.6 267 62.9
Peaxi162Scf00469g00217 Petunia axillaris HOM05D006699 ORTHO05D008399 3.1e-89 332.8 330 55.2
Sed0000889 Sechium edule HOM05D006699 ORTHO05D008399 9.0e-89 331.3 278 62.9
Manes.01G133200 Manihot esculenta HOM05D006699 ORTHO05D008399 3.8e-87 325.9 276 62.3
Aqoxy1G02064 Aquilegia oxysepala HOM05D006699 ORTHO05D008399 3.9e-84 315.8 259 65.3
Lju1655A0G36 Lonicera japonica HOM05D006699 ORTHO05D008399 4.1e-81 305.8 397 46.6
AUR62037610 Chenopodium quinoa HOM05D006426 ORTHO05D008399 6.9e-81 305.1 230 68.7
Sed0016519 Sechium edule HOM05D006699 ORTHO05D008399 2.0e-80 303.5 344 52.9
Eucgr.K01127 Eucalyptus grandis HOM05D006699 ORTHO05D008399 1.4e-78 297.4 329 51.7
MELO3C013567.2 Cucumis melo HOM05D006699 ORTHO05D008399 2.5e-78 296.6 230 67.8
Cc05_g08340 Coffea canephora HOM05D006699 ORTHO05D008399 1.6e-77 293.9 243 62.6
HPP92_009665 Vanilla planifolia HOM05D006699 ORTHO05D008399 4.6e-77 292.4 393 45.8
Mapoly0038s0046 Marchantia polymorpha HOM05D006699 ORTHO05D008399 8.7e-76 288.1 300 49.7
Oeu018752.1 Olea europaea HOM05D006699 ORTHO05D008399 8.2e-74 281.6 237 62.0
Pp3c8_13580 Physcomitrium patens HOM05D006699 ORTHO05D008399 3.8e-71 272.7 312 47.8
Ah.01g003530 Amaranthus hybridus HOM05D006426 ORTHO05D007737 3.0e-68 263.1 181 70.2
vmacro12376 Vaccinium macrocarpon HOM05D006699 ORTHO05D008399 4.3e-67 259.2 335 46.3
SEGI_23271 Sequoiadendron giganteum HOM05D006699 ORTHO05D008399 2.8e-66 256.5 254 53.9
AagrBONN_evm.TU.Sc2ySwM_228.3020 Anthoceros agrestis HOM05D006699 ORTHO05D008399 5.9e-64 248.8 275 49.1
Atru.chr6.2796 Acer truncatum HOM05D006699 ORTHO05D008399 9.1e-57 224.9 184 61.4
SMO014G0045 Selaginella moellendorffii HOM05D006699 ORTHO05D008399 3.5e-56 223.0 350 40.6
Cpa.g.sc52.174 Carica papaya HOM05D006699 ORTHO05D008399 2.1e-53 213.8 184 59.2
Zm00001eb360100 Zea mays HOM05D006699 ORTHO05D008399 1.7e-50 204.1 248 48.8
Cc05_g08350 Coffea canephora HOM05D006699 ORTHO05D008399 9.1e-33 145.2 97 73.2
Ah.01g003520 Amaranthus hybridus HOM05D006699 ORTHO05D008399 4.1e-25 119.8 110 50.9
vmacro12375 Vaccinium macrocarpon HOM05D006699 ORTHO05D008399 5.4e-25 119.4 86 65.1
Cre01.g049600 Chlamydomonas reinhardtii HOM05D006699 ORTHO05D008399 2.7e-24 117.1 294 29.9
Atru.chr6.2795 Acer truncatum HOM05D006699 ORTHO05D008399 3.0e-23 113.6 69 76.8
BraA03t11005Z Brassica rapa HOM05D006699 ORTHO05D008399 1.2e-21 108.2 94 61.7
A03p17330 Brassica napus HOM05D006699 ORTHO05D008399 3.1e-20 103.6 94 59.6
CDE10G0215 Ceratophyllum demersum HOM05D006699 ORTHO05D008399 6.4e-18 95.9 60 73.3
PRCOL_00001453 Prasinoderma coloniale HOM05D006699 ORTHO05D008399 6.4e-18 95.9 263 29.7
Lsat_1_v5_gn_2_38761 Lactuca sativa HOM05D006699 ORTHO05D008399 2.5e-14 84.0 78 57.7
MCO04G044 Micromonas commoda HOM05D006699 ORTHO05D008399 6.2e-13 79.3 210 30.0
TPR.G33085 Trifolium pratense HOM05D006699 ORTHO05D008399 9.8e-11 72.0 42 85.7
C03p20440 Brassica napus HOM05D006699 ORTHO05D042655 2.4e-09 67.4 55 63.6
BolC3t14422H Brassica oleracea HOM05D006699 ORTHO05D042655 2.4e-09 67.4 55 63.6
SMO338G0026 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 2.3e-07 60.8 175 30.9
Mapoly0094s0013 Marchantia polymorpha HOM05D005386 ORTHO05D006981 3.3e-06 57.0 205 27.8
HanXRQChr06g0183931 Helianthus annuus HOM05D005386 ORTHO05D006981 5.6e-06 56.2 166 28.9


User provided reference genes

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