Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_18091_v3 Cicer arietinum L. HOM05D006250 ORTHO05D007107 9.6e-126 454.9 603 100.0
Medtr5g035590 Medicago truncatula HOM05D006250 ORTHO05D007107 7.2e-89 332.4 604 89.1
Psat4g140960 Pisum sativum HOM05D006250 ORTHO05D007107 1.5e-83 314.7 229 76.4
TPR.G13515 Trifolium pratense HOM05D006250 ORTHO05D007107 2.1e-80 304.3 567 86.4
Lj2g0015976 Lotus japonicus HOM05D006250 ORTHO05D007107 1.6e-75 288.1 604 84.1
Glyma.01G036200 Glycine max HOM05D006250 ORTHO05D007107 1.1e-73 282.0 232 72.4
Phvul.002G075400 Phaseolus vulgaris HOM05D006250 ORTHO05D007107 2.1e-72 277.7 233 70.8
Glyma.02G029800 Glycine max HOM05D006250 ORTHO05D007107 3.6e-72 276.9 230 71.3
Lalb_Chr09g0326521 Lupinus albus HOM05D006250 ORTHO05D007107 2.0e-70 271.2 606 78.2
arahy.Tifrunner.gnm1.ann1.11GRU6 Arachis hypogaea HOM05D006250 ORTHO05D007107 5.7e-70 269.6 611 75.9
arahy.Tifrunner.gnm1.ann1.ST0DQ2 Arachis hypogaea HOM05D006250 ORTHO05D007107 5.7e-70 269.6 611 75.9
VMungo0720G1586 Vigna mungo HOM05D006250 ORTHO05D007107 2.2e-69 267.7 226 69.9
VMungo1215G1343 Vigna mungo HOM05D006250 ORTHO05D007107 8.0e-64 249.2 213 68.1
MD16G1085800 Malus domestica HOM05D006250 ORTHO05D007107 4.1e-60 236.9 603 81.1
Hma1.2p1_1049F.1_g251780 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 3.2e-57 227.3 610 75.7
Hma1.2p1_2649F.1_g326135 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 3.2e-57 227.3 610 75.7
MD13G1086400 Malus domestica HOM05D006250 ORTHO05D007107 3.2e-57 227.3 612 78.4
Dinv31115 Davidia involucrata HOM05D006250 ORTHO05D007107 4.2e-57 226.9 242 57.0
Haze_12133 Corylus avellana HOM05D006250 ORTHO05D007107 8.0e-56 222.6 623 72.9
COL.COLO4_19523 Corchorus olitorius HOM05D006250 ORTHO05D007107 4.0e-55 220.3 602 74.3
CiPaw.05G146100 Carya illinoinensis HOM05D006250 ORTHO05D007107 3.4e-54 217.2 624 75.0
Ciclev10031015m.g Citrus clementina HOM05D006250 ORTHO05D007107 5.7e-54 216.5 612 73.4
Eucgr.B03367 Eucalyptus grandis HOM05D006250 ORTHO05D007107 9.8e-54 215.7 568 79.4
QL03p066863 Quercus lobata HOM05D006250 ORTHO05D007107 1.3e-53 215.3 615 75.0
Thecc.02G242000 Theobroma cacao HOM05D006250 ORTHO05D007107 1.3e-53 215.3 605 75.2
Gorai.009G344900 Gossypium raimondii HOM05D006250 ORTHO05D007107 1.7e-53 214.9 607 76.1
CARHR010650 Cardamine hirsuta HOM05D006250 ORTHO05D007107 3.7e-53 213.8 544 83.8
Gohir.D05G321400 Gossypium hirsutum HOM05D006250 ORTHO05D007107 3.7e-53 213.8 607 76.1
Gohir.A05G319200 Gossypium hirsutum HOM05D006250 ORTHO05D007107 1.1e-52 212.2 229 57.2
Atru.chr11.1955 Acer truncatum HOM05D006250 ORTHO05D007107 2.4e-52 211.1 227 57.3
Potri.008G193700 Populus trichocarpa HOM05D006250 ORTHO05D007107 2.4e-52 211.1 605 74.5
Sp1g09140 Schrenkiella parvula HOM05D006250 ORTHO05D007107 2.0e-51 208.0 611 77.7
GSVIVG01020179001 Vitis vinifera HOM05D006250 ORTHO05D007107 2.7e-51 207.6 637 71.6
Aa31LG2G10230 Aethionema arabicum HOM05D006250 ORTHO05D007107 3.5e-51 207.2 621 55.4
FvH4_4g35070 Fragaria vesca HOM05D006250 ORTHO05D007107 3.5e-51 207.2 613 76.8
RcHm_v2.0_Chr4g0444691 Rosa chinensis HOM05D006250 ORTHO05D007107 4.5e-51 206.8 612 77.1
BcaC05g24872 Brassica carinata HOM05D006250 ORTHO05D007107 1.3e-50 205.3 555 82.9
C05p08800 Brassica napus HOM05D006250 ORTHO05D007107 1.3e-50 205.3 555 83.1
BolC5t29626H Brassica oleracea HOM05D006250 ORTHO05D007107 1.3e-50 205.3 555 83.1
BolC8t49010H Brassica oleracea HOM05D006250 ORTHO05D007107 1.3e-50 205.3 606 75.9
Carub.0001s0994 Capsella rubella HOM05D006250 ORTHO05D007107 1.7e-50 204.9 545 83.9
FAN22G2376 Fragaria x ananassa HOM05D006250 ORTHO05D007107 3.8e-50 203.8 613 74.6
Cc11_g14200 Coffea canephora HOM05D006250 ORTHO05D007107 5.0e-50 203.4 563 76.2
Migut.L01451 Erythranthe guttata HOM05D006250 ORTHO05D007107 5.0e-50 203.4 242 54.5
Duzib251G0023 Durio zibethinus HOM05D006250 ORTHO05D007107 6.6e-50 203.0 604 75.0
Thhalv10007114m.g Eutrema salsugineum HOM05D006250 ORTHO05D007107 1.1e-49 202.2 615 77.2
BcaC07g38569 Brassica carinata HOM05D006250 ORTHO05D007107 1.9e-49 201.4 605 75.7
HanXRQChr10g0288221 Helianthus annuus HOM05D006250 ORTHO05D007107 3.3e-49 200.7 233 55.8
BcaC07g38607 Brassica carinata HOM05D006250 ORTHO05D007107 5.6e-49 199.9 552 83.5
A06p07280 Brassica napus HOM05D006250 ORTHO05D007107 5.6e-49 199.9 602 78.1
BraA06t23934Z Brassica rapa HOM05D006250 ORTHO05D007107 5.6e-49 199.9 602 78.1
BraA08t35306Z Brassica rapa HOM05D006250 ORTHO05D007107 5.6e-49 199.9 611 75.5
CAN.G1160.10 Capsicum annuum HOM05D006250 ORTHO05D007107 1.2e-48 198.7 542 79.0
Sabra08G0147200 Salix brachista HOM05D006250 ORTHO05D007107 2.1e-48 198.0 224 54.5
Solyc05g006170.4 Solanum lycopersicum HOM05D006250 ORTHO05D007107 2.1e-48 198.0 618 72.0
Nn3g16985 Nelumbo nucifera HOM05D006250 ORTHO05D007107 2.8e-48 197.6 222 55.4
THA.LOC104816735 Tarenaya hassleriana HOM05D006250 ORTHO05D007107 3.6e-48 197.2 163 64.4
Prupe.1G260300 Prunus persica HOM05D006250 ORTHO05D007107 4.7e-48 196.8 190 57.4
TAR629G0559 Trochodendron aralioides HOM05D006250 ORTHO05D007107 6.1e-48 196.4 238 50.8
CDE04G2141 Ceratophyllum demersum HOM05D006250 ORTHO05D007107 8.0e-48 196.1 181 59.7
ECA246G3811 Erigeron canadensis HOM05D006250 ORTHO05D007107 8.0e-48 196.1 228 51.3
Sopen05g002190 Solanum pennellii HOM05D000912 ORTHO05D001232 8.0e-48 196.1 618 72.2
TWI18G0037 Tripterygium wilfordii HOM05D006250 ORTHO05D007107 8.0e-48 196.1 615 72.0
MBI18_g16987_MAGBIO Magnolia biondii HOM05D006250 ORTHO05D007107 1.0e-47 195.7 164 64.0
PGSC0003DMG400015603 Solanum tuberosum HOM05D006250 ORTHO05D007107 1.4e-47 195.3 618 72.0
MSTRG.625 Avicennia marina HOM05D006250 ORTHO05D007107 1.8e-47 194.9 239 51.0
CANSAT01G1928 Cannabis sativa HOM05D006250 ORTHO05D007107 1.8e-47 194.9 231 55.0
Lsat_1_v5_gn_3_49600 Lactuca sativa HOM05D006250 ORTHO05D007107 2.3e-47 194.5 230 51.3
FAN12G0989 Fragaria x ananassa HOM05D006250 ORTHO05D007107 6.8e-47 193.0 232 54.3
Manes.05G091350 Manihot esculenta HOM05D006250 ORTHO05D007107 1.2e-46 192.2 610 72.0
SalBow2G3220 Salvia bowleyana HOM05D006250 ORTHO05D007107 2.0e-46 191.4 238 51.3
FAN17G0914 Fragaria x ananassa HOM05D006250 ORTHO05D007107 2.6e-46 191.0 624 72.6
AUR62039411 Chenopodium quinoa HOM05D006250 ORTHO05D007107 4.4e-46 190.3 190 54.2
BcaC05g24932 Brassica carinata HOM05D006250 ORTHO05D007107 9.8e-46 189.1 168 59.5
AUR62026573 Chenopodium quinoa HOM05D006250 ORTHO05D007107 1.3e-45 188.7 190 54.2
C08p13750 Brassica napus HOM05D006250 ORTHO05D007107 2.9e-45 187.6 225 49.8
unitig_749.g13267 Utricularia gibba HOM05D006250 ORTHO05D007107 8.3e-45 186.0 179 58.7
DCAR_026556 Daucus carota HOM05D006250 ORTHO05D007107 1.1e-44 185.7 162 61.7
AT1G10510 Arabidopsis thaliana HOM05D006250 ORTHO05D007107 3.2e-44 184.1 164 60.4
AL1G21310 Arabidopsis lyrata HOM05D006250 ORTHO05D007107 1.2e-43 182.2 230 49.6
A08p33910 Brassica napus HOM05D006250 ORTHO05D007107 3.5e-43 180.6 230 49.1
EL10Ac6g13760 Beta vulgaris HOM05D006250 ORTHO05D007107 6.6e-42 176.4 226 50.4
FAN07G1033 Fragaria x ananassa HOM05D006250 ORTHO05D007107 6.6e-42 176.4 251 50.2
Hund05952 Selenicereus undatus HOM05D006250 ORTHO05D007107 8.6e-42 176.0 212 51.4
Lj6A800T42 Lonicera japonica HOM05D006250 ORTHO05D007107 2.5e-41 174.5 244 48.8
PSO063G2741 Papaver somniferum HOM05D006250 ORTHO05D007107 3.3e-41 174.1 246 50.0
PSO832G4030 Papaver somniferum HOM05D006250 ORTHO05D007107 7.3e-41 172.9 246 49.6
Ah.03g132320 Amaranthus hybridus HOM05D006250 ORTHO05D007107 1.2e-40 172.2 242 44.6
ClCG09G022110 Citrullus lanatus HOM05D006250 ORTHO05D007107 1.2e-40 172.2 264 44.7
Aqoxy3G03090 Aquilegia oxysepala HOM05D006250 ORTHO05D007107 1.4e-39 168.7 620 69.7
TAR371G0500 Trochodendron aralioides HOM05D006250 ORTHO05D007107 3.4e-38 164.1 226 48.2
Nitab4.5_0005722g0060 Nicotiana tabacum HOM05D006250 ORTHO05D007107 5.8e-38 163.3 241 47.3
MELO3C002989.2 Cucumis melo HOM05D006250 ORTHO05D007107 7.5e-38 162.9 218 47.7
PGR102G1255 Punica granatum HOM05D006250 ORTHO05D007107 2.2e-37 161.4 488 85.7
Sed0020226 Sechium edule HOM05D006250 ORTHO05D007107 4.9e-37 160.2 213 44.6
Sc11g0001380 Simmondsia chinensis HOM05D006250 ORTHO05D007107 1.9e-36 158.3 213 47.9
Actinidia15003 Actinidia chinensis HOM05D006250 ORTHO05D007107 1.2e-35 155.6 219 45.7
CsaV3_5G025030 Cucumis sativus L. HOM05D006250 ORTHO05D007107 1.7e-34 151.8 222 45.5
ATR0829G105 Amborella trichopoda HOM05D006250 ORTHO05D007107 2.3e-34 151.4 120 63.3
Dinv24907 Davidia involucrata HOM05D006250 ORTHO05D007107 2.3e-34 151.4 90 82.2
Lsat_1_v5_gn_4_95161 Lactuca sativa HOM05D006250 ORTHO05D007107 5.0e-34 150.2 120 64.2
CSS0049978 Camellia sinensis var. sinensis HOM05D006250 ORTHO05D007107 7.3e-33 146.4 235 44.7
SGA_v2.0_scaffold8G04258 Striga asiatica HOM05D006250 ORTHO05D007107 4.7e-32 143.7 286 37.8
Hma1.2p1_1049F.1_g251790 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 4.0e-31 140.6 183 48.6
Hma1.2p1_2649F.1_g326133 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 4.0e-31 140.6 183 48.6
vmacro16283 Vaccinium macrocarpon HOM05D006250 ORTHO05D007107 6.8e-31 139.8 120 58.3
Os06g0237502 Oryza sativa ssp. japonica HOM05D006250 ORTHO05D007107 8.9e-31 139.4 162 46.3
Zm00001eb371900 Zea mays HOM05D006250 ORTHO05D007107 2.6e-30 137.9 158 47.5
Rhsim12G0124700 Rhododendron simsii HOM05D006250 ORTHO05D007107 2.2e-29 134.8 156 50.0
HPP92_017346 Vanilla planifolia HOM05D006250 ORTHO05D007107 6.2e-24 116.7 174 41.4
Peaxi162Scf00421g00828 Petunia axillaris HOM05D006250 ORTHO05D007107 3.4e-22 110.9 120 53.3
Hma1.2p1_2649F.1_g326137 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 3.7e-21 107.5 91 81.3
Nitab4.5_0000257g0160 Nicotiana tabacum HOM05D006250 ORTHO05D007107 2.4e-20 104.8 91 80.2
vmacro16284 Vaccinium macrocarpon HOM05D006250 ORTHO05D007107 4.3e-17 94.0 156 40.4
Lsat_1_v5_gn_4_84060 Lactuca sativa HOM05D006250 ORTHO05D007107 5.8e-14 83.6 57 68.4
TAR629G0016 Trochodendron aralioides HOM05D006250 ORTHO05D007107 9.9e-14 82.8 47 85.1
AagrBONN_evm.TU.Sc2ySwM_344.3920 Anthoceros agrestis HOM05D006250 ORTHO05D007107 8.4e-13 79.7 166 37.3
SEGI_23986 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 8.4e-13 79.7 153 37.9
DCAR_026558 Daucus carota HOM05D006250 ORTHO05D007107 1.1e-12 79.3 139 39.6
SEGI_34898 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 3.5e-11 74.3 82 70.7
Mapoly0090s0039 Marchantia polymorpha HOM05D006250 ORTHO05D007107 3.6e-08 64.3 168 33.9
SMO116G0024 Selaginella moellendorffii HOM05D006250 ORTHO05D007107 3.6e-08 64.3 62 46.8
Pp3c14_24560 Physcomitrium patens HOM05D006250 ORTHO05D007107 1.1e-07 62.8 129 33.3
Pp3c14_24566 Physcomitrium patens HOM05D006250 ORTHO05D007107 1.1e-07 62.8 129 33.3
CBR_g61650 Chara braunii HOM05D006250 ORTHO05D007107 4.5e-06 57.4 87 59.8


User provided reference genes

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